>input_sequence_76120
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------------------------------------------------------ATGGCGCCGGATGAGGCTGTGGCCGG
CGTCGAGTGTGTCCGCCCTGCCAAAAGAAAGGCGGAGGCTTTCGCCGGAGAGGAGTGTTCGCGCGCCGCCAAGAGGCTCG
ACTGCTCCGAGGGAGACAAGGATGCAGCGGCAGGGACGGTCCAACG------------------AAAAAAGATGTGGCGG
CTGCCACTGGAGGAGATCAAGTGGATCCTTGCACAGCCGAACGAACCTGTTTGGGCTGAGATCCGGGAGCTCAAGCGCGC
CAACCCGTCGCTGCTGCCATCGCAT---GAGGAGGAGAAGGATGAGGCAATGGTGCTGCTGTACGCATGTGCTCGCGACT
GCTATGAGGATGAAGAGAAGTTCGCGCGATTCCAGGCCTGGGTCCGCAGCGAGTACGCCTCCATGGGATTCGTGGAGGTC
GA--------CTACGACTACTTCGGTGAGAGGGCCGAGGCGACGAGGCTGAGCAAGGAAGCACGGGAGGAGGTGTTCAGA
GACACGGATCTTTCTTCAGACAGCGAGGACGACGACGAGTTGAAGCATCTCAAGAGAACAGTTAGGAGCTGGGTCTGA--
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>chr5D_1_TraesCS5D01G098100
GCTCACCCGCCCCAACCCTAGGCACAGGATCCCGCGTCTCCGCCGGCACTGGTGCCCCTGCGGCGGGCGTGCGTGCCACC
CGCAGTGGCGCCGGACTCACTCGGAACTAGAGCCCAGCGCGCAGGCACCCCTGTCCTCGACCGCTGGCCCAAGCATCGCA
GCTCCCGCCGGAGCGCGACGCGGCGGAGCCCAGATTTGCGACGCCACCCGCCGAGATCCATGACCACCCAGCGGAACGAC
CTCCGCCGCTCGGCCTTGAAGGAGCCCCCAAGCTCCTTCGCGTGAGCCACAAAATCTCCCACCGAGCAGAGAGCCTGGCT
GACCACCTCGTCGCCACCGG--------------TCATCTTCCGAACTGTCGCCCGCAAAAGCCCAGAAACGGCTCCCCG
ACCAGCCACCCGCAACATGGGGGCGCAGACACAGCATCAGAACCGACGAGGCCGCGGCCGCTCCCACGCCCGCCCGGACC
ACCGCACACTCCGGCTCCTCCAGCCGGCGAGCAGCCTCAATTCCGTCAAGGCCCGCCCTGTCACCACCCGAGTCGCCCGG
CCGTACGTGAGCTGTTAGACAAGACATCTCTCTTCCGCGGTTTTCAACATATAAATTGGAATCAAATTTTTTGAATTCAT
GATATTTGCGTTTGAAAAAAAAATTAAACCAAAGAGGAGGGTGCGTGTGTTGTACCGTATGCTGTTGACATGGCACGCGC
TAACGTGTCCTGGTTTTCGTGTTTGAGAGAATTTCGGTTTGCCTTTCCCATGCCGAGTCGGCACCAAACAAAGCTGAATA
TAACAAGAACCAATTCTGCCCTCTTCTTGCGCCAGGTCGAAACTCCCAAATCTCTCTCGCCAGAATCCCCCAGTCCTCCC
TTACGCGGCAGCCAAACAAAAATATATAGTGTAGATCGGTTCTTCCTTCCTGTCGCCCAAATCGGAACTCCCAAATTCTT
CTCGCCAGAATCCTCCAGCATCTTCCTTCGATAAACCATCCATCAGACCAACCGATGGCGCCGGATGAGGCTGTGGCCGG
CGTCGAGTGTGTCCGCCCTGCCAAAAGAAAGGCGGAGGCTTTCGCCGGAGAGGAGTGTTCGCGCGCCGCCAAGAGGCTCG
ACTGCTCCGAGGGAGACAAGGATGCAGCGGCAGGGACGGTCCAACG------------------AAAAAAGATGTGGCGG
CTGCCACTGGAGGAGATCAAGTGGATCCTTGCACAGCCGAACGAACCTGTTTGGGCTGAGATCCGGGAGCTCAAGCGCGC
CAACCCGTCGCTGCTGCCATCGCAT---GAGGAGGAGAAGGATGAGGCAATGGTGCTGCTGTACGCATGTGCTCGCGACT
GCTATGAGGATGAAGAGAAGTTCGCGCGATTCCAGGCCTGGGTCCGCAGCGAGTACGCCTCCATGGGATTCGTGGAGGTC
GA--------CTACGACTACTTCGGTGAGAGGGCCGAGGCGACGAGGCTGAGCAAGGAAGCACGGGAGGAGGTGTTCAGA
GACACGGATCTTTCTTCAGACAGCGAGGACGACGACGAGTTGAAGCATCTCAAGAGAACAGTTAGGAGCTGGGTCTGAAA
CCCATAGTTCTATCTATTTCAGG-----TTTCTG---ATGCTGGTGGCCTGTCACGGCATCGGAGCTACTACCTCCTCTT
GTCTTATCTTGTAACCCTGC---TGGTGCAGCAATTCTTTGTACTGATGCCCGTGGGCGCCCATGTCGCAAGAGGCTAGT
ACGAGCAAGTATTGTTTGTTCAGTAAAAATTGATATACCGGATTGCAAGGAGTCAGCCTCTAGCAAGTTTGTCCCTGCTA
TCATTTGCTGTCATTAGCAACTTCATCAAATGCCTATTCTGTTGCTCAAGCTTCTTCATCTGATTGCAGCTGTAATCTCT
AGCCTCTGTG---------------------------------------------------TTGCATGAATTTTCCATGT
ATCTGATACCCTTCTATAGTAGTACTGTCCTCTGCTTCGTGATAATCTACTGAAACTATTCCGGATATATATT-------
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----------------------------------------------------------------TGGGGACACCTTGACC
TTTTGAGGAGCAAACGTTGAGACGGATTTGTTCCCATTGTACTCCCTCTGTTCCCATT----------------------
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------------------------------------------------------GCACCTGGACCACCAATGCATATATA
CACATGCAGCATACATGTTAGTTTTTCTTGTACTTCTATTCCGTTACCAGCGATGTTCTATCTATCTAAAACAGCACAAG
AATAGGCATGGGTTCATCAAATTTAAAATATGTTGTACACAATAGTTCTATAGTTGTTGATGCGATTGTTTGCTATCGAT
ACGTACTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTTACACTACACTAGTGTCAAAAACGCTCTTATATTATGGGA
CGGAGGGAGTAAATCTGTTGTAGGCATTGAGAGAGAAATGGTACCTAGTACAGTGGGTTGGTAGCATAAAGAAACTGCCA
AGATTGCGCATTTAGCAGCCCTTGCAGGCACACTTAATTGCAAGAACTTTGC-TCACCGTGAACACCACATAATAAAAGA
TAAAACACATTAAAACATTCAGGCCTTGACGCCTCGGCCGTGGTCAAGGCATCCACACCACACGCAACAAAGCAGCACTG
CAATAGGA
>chr5D_1
GCTCACCCGCCCCAACCCTAGGCACGGGATCCCGTGTCTCCGCCGGCGCTGGTGCCCCTGCGGCGGGCGTGTGTGCCACC
CGCAGTGGCGCCGGACTCGACCGAAACTAGAGCCCAGCGCGCAGGCACCCCTGTCCTCGACCGCTGGCCCAAGCATCGCA
GCTCCCGCCGGAGCGCAACGCGGCGGAGCCCAGATTTGCGACGCCACCCGCCGAGATCCATGGCCGCCCGGCGGAACGAC
CTCCGCCGCTCGGCCTTGAAGGAGCCCCCAAGCTCCTTCGCATGAGCCACAAAATCTCCCACCGAGCAGAGAGCCTGGCT
GACCACCTCGTCGCCACCGGAGGTCTCCTCCTCGTCATCTTCCGAACTGTCGCCGGCAAAAGCCCAGAAACGGCTCCCCG
GCCAGCCACCCGCAACATGGGGGCGCAGACACAGCATCAGAACCGACGAGGCCGCGGCCGCTCCCACGCCCGCCCGGACC
ACCGTACACTCCGGCTCCTCCAGCCGGCGAGCAGCCTCAATTCCGTCAAGGCCCGCCCTGTCACCACCCGAGTCGCCCGG
CCGTACGTGCGCCGTTAGACGAGACATCTCTCTTCTGCGGTTTTCAACATATAAATTGGAATCAAATTTTTTGAATTCAT
GATATTTGCGTTTGAAAAAAAAATTAAACCAAAGAGGAGGGTGGGTGTGTTGTACAGTATGCTGTTGACATGGCACGCGC
TAACGTGTCCTGGTTTTCGTGTTTGAGAGAATTTCGGTTTGCCTTTCCCATGCCGAGTCGGCACCAAACAAAGCTGAATA
TAACAAGAACCAATTCTGCCCTCTTCTTGCGCCAGGTCGAAACTCCCAAATCTCTCTCGCCAGAATCCCCCAGTCCTCCC
TTACGCGGCAGCCAAACAAAAATATATAGTGTAGATCGGTTCTTCCTTCCTGTCGCCCAAATCGGAACTCCCAAATTCTT
CTCGCCAGAATCCTCCAGCCTCTTCCTTCGATAAACCATCCATCAGACCAACCGATGGCGCCGGATGAGGCTGTGGCCGG
CGTCGAGTGTGTCTGCCCTGCCAAAAGAAAGGCGGAGGCTTTCGCCGGAGAGGAGTGTTCGCGCGCCGCCAAGAGGCTCG
ACTGCTCCGAGGGAGACAAGGATGCACCGGCAGGGACGGTCCAACG------------------AAAAAAGATGTGGCGG
CTGCCACTGGAGGAGATCAAGTGGATCCTTGCACAGCCGAACGAACCTGTTTGGGCTGAGATCCGGGAGCTCAAGCGCGC
CAACCCGTCGCTGCTGCCATCGCCT---GAGGAGGAGAAGGATGAGGCAATGGTGCTGCTGTACGCATGTGCTCGCGACT
GCTATGAGGATGAAGAGAAGTTCGCGCGATTCCAGGCCTGGGTCCGCAGCGAGTACGCCTCCATGGGATTCGTGGAGGTC
GA--------CTACGACTACTTCGGTGAGAGGGCCGAGGCGACGAGGCTGAGCAAGGAGGCACGGGAGGAGGTGTTCAGA
GACACGGATCTTTCTTCAGACAGCGAGGACGACGACGAGTTGAAGCATCTCAAGAGAACAGTTAGGAGCTGGGTCTGAAA
TCCATAGTTCTATCTATTTCAGG-----TTTCTG---ATGCTGGTGGCCTGTCACGGCATCGGAGCTACTACCTCCTCTT
GTCTTATCTTGTAACCCTGC---TGGTGCAGCAATTCTTTGTACTGATGCCCGTGTGCGCCCATGTCGCAAGAGGCTAGT
ACGAGCAAGTATTGTTTGTTCAGTAAAAATTGATATACCGGATTGCAAGGAGTCAGCCTCTAGCAAGTTTGTCCCTGCTA
TCATTTGCTGTCATTAGCAACTTCATCAAATGCCTATTCTGTTGCTCAAGCTTCTTCGTCTGATTGCAGCTGTAATCTCT
AGCCTCTGTG---------------------------------------------------T------------------
---------------------------------GCTTCGTGATAATCTACTGAAACTATTCCAGATATATATTAGGCGCT
GATAGGCGCCGGCGCACCGGCCGAACAGTTGGACCGGTCAAGCCACAACCACCCGATACATACTTTCCCAACCATCGGAT
TACTTCATTTCAAAAGTCAAAACGCACAGGAAACAAGGAAAAAAAGGCATTGTGCGCATATGCCAGATCCTGAGGCTCGC
CGGCCGCCCGCGCTTCTCCTCGTCTTCCCGTGCTTGCTTGCCACACTTGCCACTGCGCCCGTCACCCGCGCTCGCTTGCC
GCTCGCCCGTCGCTCGTGCACGGCACTTGCCTCGGCTGCCTCCGCTTGCCATGGTCGCAACTCACACACAGGAGGGTCCA
GCGCGCTGTCATTCATGGTTGCAGCGTCCCCCACGACCCCGTCTCCGGCTCGCCGCCCCCGTCTCCGGCTCGCTGCTGTT
GTTAACTTGTACCGCCGTGTCTAGCAAAAAAAAGCAACAAAAACCTCAAGTGCTGGGTTGAAGCAAAAAGATTTGCCGGT
TCCAACAAAAATAAATGATGGTTCCAGCAAAAATCTCAGCAGTAGAAAAACTTCAGTAGTCGATTTGTAGCAAACAAATT
AGTTAGTTCCAGCAAAAATAAACGCCGGTTCAAACAAAAAATCATGCCGCTTCAAACAAATATTTGCTGGTTCTAGCAAT
TTACATGACGCCGTGATGCGTGCCATATAAATGGATGTAGCAATTGAGAACATTGGTTGTAGCAAAAACTCAAACGGTGG
TAGCAAAAAAAGTGATGCACTGGTTCCACCAAAAAAACATGGTAGCACAAAAATTGACTGGTTCTAGCAAAAGCAAAGAT
GGAGGTAGCAAAAATGTACACTGGTTGTACCAAAAGCAAATGACATGGTAGCAAAGTTTTGGGTTGGTTCCATCAAAAAA
CGAACATGGTGGTAGCAAAAAAATTGATTTGTTCCAACAAAAACTGAAGATAGTGGTAGCAAAATTGTACACTGGCTGTA
CCAAAAAGCAAATGACAAGGCAGCAAAAACTTGGGTTGGTTCCATCAAAAAACAAACATGATGGTAGCAAAATCTTACAC
TAGTTCCAGCAAAAGGCAAGGGCGTTGGTAGCAAAAACTGGGGCTGCTTCCAAGAAAAGAAAGGCCGGATCTCCATCACT
TGTCGCCGTGGTTGCAACGCTCCAACGCCGGCCGCCGCGGCTCTCCATCACTTGTCGCCGCCATCGGCAGCGCTGGTGGG
GATTGGTTGGCAGCACTAGTCACTGGTGGGGAGTGAGGGGGCGGGGTGGGGGCAGCCACGGTGGGGAAGCGCGGTGGCCA
TGGTTGGCGGCACAGCCAATCGCCGGTGGGGGAGGCGCGATGGCCATGGCTGGCGGCACAGCCAGTTGCCGGTGGGGGAG
GCGCGAGCATCTACAGAGAGAAAGAAAAGGGAAAGATCGGAGGTTGCGATGTAGACGAGATGCGCTATGAGCGGTTGGCG
TTGTTCCTGAAGAGATAAGATAACGTGGGAGGTGGTCGTTCGGTGGTGGGCCTACTTGCAGAGGAAGCGAGTCACAGAGC
GAGTGGTGCGACCGGCCCAATGATTCGGCCGGCGCACCGTGGGGAAACGTTTCCCATATATATTTGGGGACACCTTGACC
TTTTGAGGAGCAAACGTTGAGACGGATTTGTTCCCATTGTACTCCCTCTGTTCCCATT----------------------
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------------------------------------------------------GCACCTGGACCACCAATGCATATATA
CACATGCAGCATACATGTTAGTTTTTCTTGTACTTCTATTCCGTTACCAGCGATGTTCTATCTATCTAAAACAGCACAAG
AATAGGCATGGGTTCATCAAATTTAAAATATGTTGTACACAATAGTTCTATAGTTGTTGATGGGATTGTTTGCTATCGAT
ACGTACTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTTACACTACACTAGTGTCAAAAACGCTCTTATATTATGGGA
CGGAGGGAGTAAATCTGTTCTAGGCATTGAGAGAGAAATGGTACCTAGTACAGTGGGTTGGTAGCATAAAGAAACTGCCA
AGATTGCGCATTTAGCAGCCCTTGCAGGCACACTTAATTGCAAGAACTTTGCCTCACCGTGAACACCACATAA---AAGA
TAAAACACATTAAAACATTCAGGCCTTGACGCCTCGGCCGTGGTCAAGGCATCCACACCACACGCAACAAAGCAGCACTG
CAATAGGA
>chr5A_1057
GGT-----------------------------------------------------------------------------
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---------------------------------GGAGGCTGTGGCCGGCGAGGAATGTTCACGCGCCGCCAAAGGGCTCG
ACTGCTCCGAGGGAGATAAGAAGGCGGCGGCGGCGGCCGGCAGCGAAGTAGAGGCGACTCCAGCGAAAAAGATGTGGCGG
TTGCCGCTGGAGGAGATCGAGTGGATCCTCGCCCAGTCGAACGAACCTGTCTGTGCTGAGTTTCGGGCCCTCAAGCGCGC
CAATCCGTCGCTGCTGCCATCGCCT---GAGG---AGAAGGACGAGTCAACGGTGCTGCTGTACGCATGTGCCCGCGACT
GCTATGAGGATGAAGAGAAGTTCACGCGATTCCAGGCCTGGGTCCGCAGCGAGTACAACTCCAAAGGATTCGTGGAGGTC
GA--------CTACGACTACTTCGGTGAAAGGGCCGAGGCGACGAGGCTGAGCGAGGAAGCACGGGAGGAGGTGTTCAGA
GACACGGATCTTTCTTCAGACAGCGAGGACGGCGACGAGTTGAAGCTTCTCAAGACGACA------AGCTGGGTCTGAAA
CCCATAGTTCTATCTTTTTCAGG-----TTTCGAATAATCCTTGTGGCTTGCCATTGCATCGGAGG---TACCTTCTCTT
GTCTTATCTTGTAACCCTGC---TAGTGCAGCAATTCATTGTACTGATGCCCGTGCGCGCCCATGTCGCAAGAAGCTAGT
ACGAGCAAGTATTGTCTGTTCAGTAAAAATTGATATACCGAATTGCAAGGAGTCAGCCTCTAGCAAGTTTGTCCCTGCTA
TCATTTGCTGTCATTAGCAACTTCATCAAATGCCTATTCTGTTGCTCAAGCCTCTTCATCTGATTGCAGTTGTAATCTCT
AGCGTCTGTGTTGCATGAATTTTCCATGTATCTGATACCCTTCTATAGCAGCACTGTCCTCT------------------
---------------------------------GCTTCGTGATAATCTATTGAAACTATTCCAGATATATATC-------
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----------------------------------------------------------------TGGGGACAACTTGACC
T-TTGAGGAGCAAATGTTCAGACGGATTTGTTCACGTTGAACATCCTTTGGTGATATTGAGCAAGTGGTAGTCCTACATA
AGATCTAGTATAAGTGTGCATGGGACTTTTACTATTGTTGCTCCACCCCTGCAAAATTGATAGTATTAGCCAAGGACCAA
GTACAGATGATGGGCCATAGAGCAAGTTTGGTAGATGAGTTCTACATATAAAGAGCACCTGGACCACCAATGCATATGTA
CACATGCAGCATATATGTTAGTTTTTCTTGCTCTTTTATTCGGTTACTAGCGATGTTCTATCTATCTAAAACAGCACAAG
AATAG-CATGGGTTCATCAAGTTTAAAATATGTAGTAC------------------------------------------
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>chr5D_1060
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---------------------------------GGAGGCTGTGGCCGGCGAGGAATGTTCACGCGCCGCCAAAGGGCTCG
ACTGCTGCGAGGGAGATAAGAAGGCGGCGGCGGTGGCCAGCAGCGAAGTATTGGAGACTTCAGGGAAAAAGATGTGGCGG
CTGCCGCTGGACGAGATCGAGTGGATCCTCGCCCAGTCGAACGAACCTGTCTGTGCAGAGTTTCGGGCCCTCAAGCGCGC
CAACCCGTCGCTGCTGCCATCGCATGAGGAGG---AGAAGGACGAGTCAATGGTGCTGCTGTACGCATGTGCCCGCGACT
GCTATGAGGATGAAGAGAAGTTCGCGCGATTCCAGGCCTGGGTCCGCAGCGAGTACAACTCCAAAGGATTCGTGGAGGTC
GA--------CTACGACTACTTCGGTGAGAGGGCCGAGGCGACGAGGCTGAGCGAGGAAGCACGGGAGGAGGTGTTCAAA
GACACGGATCTTTCTTCAGACAGCGAGGATGACGACGAGTTGAAGCTTCTCAAGACGACAGTTAGGAGCTGGGTCTGAAA
CCCATAGTTATA--------------------------------------------------------------------
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>chr4A_1146
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----------------------------------------------------------TCCAGCAAAAAAGATGCGGCGG
CTGCCACTGGAGGAGATCAAGTGGATCCTTGCACAGCCGAACGAACCTGTCTGGGCTGAGATCCGGGAGCTCAAGCGCGC
CAACCCGTCGCTGCTGCCCACGCCGAAGGAGG---AGAAGGATGAGGCAGTGGTGCTGCTGTACGCATGTGCCCGCGACT
GCTATGAGGACGAAGACAAGTTTGCGAGATTCCTGGCCTGGGTCCGTAGCGAGTACGCCTCCATGGGATTCGTGGAGGTC
GA--------CTACGACTACTTCGGTGAGAGGGCCGAGGCGACGAGGCTAAGCAAGGAAGCGCGGGAGGAGGTGTTCGGA
GACACCGACCTTTCTTCAGACAGCGAGGACGATGATGAGTTGAAGCTTCTCAAGAGGACAGTTAGGGGCTGGGTCTGAAA
CCCATA--TCTATCTATTTCAGCTTTGATTTCTG---ATGCGTGTGGCCTGTCACGGCATCGATCG---GAGCTCCTCTT
C-CTTATCTTGTAACACCCTGCTTGCAACAACAATTCATTGTATGA----------------------------------
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>chr7A_1146
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----------------------------------------------------------TCCAGCAAAGAAGATGTGGCGG
CTGCCGCTGGAGGAGATCAACTGGATCCTTGCACAGCCGAACGAACCTGTCTGGGCCCAGATCCGGGAGCTCAAGCACGC
CAACTCGTCGCTGCTGCCGTCGCCAGAGGAGG---AGAAGGATGAGTCAATGGTGCTGCTGTACGCATGTGCCCGCGACT
GCTACGAGGACGAAGACAAGTTCGCGCGATTCCAAGCGTGGGTCCGTAGCGAGTACGCCTCCATGGGATTCGTGGAGGTC
GACTACGAGTCTACGACTACTTCGGTGAGAGGGCCGAGGCGACGAGGCTGAGCAAGGAAGCACGTGAGGAGGTGTTCGGA
GACACCGATCTTTCTTCAGACAGCGAGGACGATGATGAGTTGAAGCTTCTCAAGAGGACAGTTAGGGGCTGGGTCTGGAA
CCCATA--TCTATCTATTTCAGCTTTGATTTCTG---ATGCGTATTGCTTGTCACGGCATCGGAGCTCCTCTTG---CTT
ATACTCTCTTGTAACACCCTGCTTGCTACAACAATTCATTGTATGAATGC------------------------------
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>SNPs
-------------------------S--------S------------S-----------------------S--------
------------------SSS--S--------------------------------------------------------
----------------S---------------------------------------------S--S---S----------
-----------------------------------------S--------------------------------------
------------------------------------------------------S-------------------------
S-------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
---------S--S-------S--------------S--------------------------------------------
-------------------------------------------S-----------S------------------------
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-------------------S------------------------------------------------------------
-------------S------------------------------------------------------------------
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-------------------------------------------------------S------------------------
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--------------------------------------------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S-----------------
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--------------------------------------------------------------S-----------------
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-------------------S------------------------------------------------------------
-------------------------------------------------------------------------SSS----
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>forward_375
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-----------------------------------CATCTTCCGAACTGTCGCCC-------------------------
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>reverse_2024
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-----------------------ACTGTCCTCTGCTTCGTGAT-------------------------------------
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