>input_sequence_76110
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----------------------------------------------------------ATGGCCTCCTTCCCGCTGGCAT
CCGCCGCCCGTTCCCTCCCCACCCTAGGGTCTCACCTCCCGGCAGCCGCGACCACCCGCAGCGTCTCCATCCCGGCCTCC
CCTGTCCCTGCGGCGAAGAACGCCACCTCCTGCAGCTTCAGCACCAGGAGCT---GCAGGCCAACCGTTCGACGGAACGC
CGCAGAGACCTACGTCCCAGGCTCCGGCAAGTACATCGCGCCGGACTACCTCGTGAAGAAGGTGTCGGCCAAGGAGCTGG
AGGAGCTCGTCAGGGGGGAGAGGAAGGTGCCGCTCATCGTGGATTTCTACGCCACCTGGTGCGGGCCGTGCGTGCTCATG
GCGCAGGACATCGAGATGCTCGCCGTCGAGTACGAGGACAGCGCCTTGTTTGTCAAGGTGGACACGGACGAGGAATATGA
GTTCGCAAGGGATATGCAGGTAAGGGGACTGCCAACGCTGTATTTCTTCAGTCCGGATCAGGGCAAGGACGCCATTAGGA
CCGAGGGGCTAATTCCTATCGAAATGGTCAGAAACATCATCGAAAACGAGCTGTGA------------------------
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>chr4B_1_TraesCS4B01G074900
TCTTTCAAATTAATTGTTTTC-TAACTCTGCAAACTTTTTATAATCTATAAAAAGCAGAGGCGTTG-TTTTTTGTTTCGT
GAGCAATTTTATTTTTTGAGATTTTTTTCTTGAACTAGTAAGAGTAAATAGATGATGTAAAATACATCATCAAATTATAG
TTAGAGTAAAATTTACATCACCAAAAAGTGGATTTTTACATCATCTCCAACTTCAACAGATGATGTAAAATTTACATCAA
TAGAAAATC----ACTCCAAAAGGTGATGTAAAATTTATATCACCGCGAAAGCGGCCATGGTGAGGTGCGCTGCAGCGAC
GTTAGTGGCCGCGGGGGTCTGAGTGATTATAGTCGTCGCTAGATGGTCTACAGATTTGAATGCATTTTTTGTTACTTCTC
ATGTTATTGGTACTGCCATGATGTT---TGATGAATAGATCAGAAGTTTCTTTCT---GAAAAAAAAGCTGCTGGTTTTT
CCCTAAACAGTGCTGCTTTTTTTTATCTCAAAGAAAAGAAAAGAAAGAGTGATTAGAGCGAACGAGTGAGTGGCGACCGA
GCCAGTCCCTAAGGGCATATACAATGGTTCTATCTTAGCAATGCCATATAGGATAAACGATTAGGTGAAGGAGAGAGAAT
TCATAAGAAAAGACCTGTCTTCTTTTATTTAAGAGAAGACAAGAGATGACCTCTTAACACAATATGTCTCACCACGTTTT
TAGGAATAGCTAGTTATTGAAGATTGAAGATAAGACTAAAAGATGATCCATTGTAGACATGTTTTTTTTATCATCTCTTA
ATTACATGCAAGACTTAAAATAAGACTATCTTATCAACCATTGTACATGCCCTAATGGGCCGGCTCAGGTGTGCGCCTTA
AA-----CTCCCGATTGCCTCAAAAAGAAAAAGAAAAAACCAGTGAAAGGAGTCCTCTTCAGTGCGCACGCACGCAGGCA
ACCCAAACCCCTGACCCCGAGGATAGGATTTT-GCTCGTCCCCCAAATCTCTCCGGCCATGGCCTCCTTCCCGCTGGCAT
CCGCCGCCCGTTCCCTCCCCACCCTAGGGTCTCACCTCCCGGCAGCCGCGACCACCCGCAGCGTCTCCATCCCGGCCTCC
CCTGTCCCTGCGGCGAAGAACGCCACCTCCTGCAGCTTCAGCACCAGGAGCT---GCAGGCCAACCGTTCGACGGAACGC
CGCAGAGACCTACGTCCCAGGCTCCGGCAAGTACATCGCGCCGGACTACCTCGTGAAGAAGGTGTCGGCCAAGGAGCTGG
AGGAGCTCGTCAGGGGGGAGAGGAAGGTGCCGCTCATCGTGGATTTCTACGCCACCTGGTGCGGGCCGTGCGTGCTCATG
GCGCAGGACATCGAGATGCTCGCCGTCGAGTACGAGGACAGCGCCTTGTTTGTCAAGGTGGACACGGACGAGGAATATGA
GTTCGCAAGGGATATGCAGGTAAGGGGACTGCCAACGCTGTATTTCTTCAGTCCGGATCAGGGCAAGGACGCCATTAGGA
CCGAGGGGCTAATTCCTATCGAAATGGTCAGAAACATCATCGAAAACGAGCTGTGAGTTCTGTCTAGGCAGCATAGTGTC
TGTAGTAGCTACATTATTTAGCTGATTCTTGTAGTAGTTCTTAGTATTTATTTAGGTGCAGCCTGCGGTGGTTGATTTGA
GCTTTGTGTTGCTGCTCGGCCGCAGGTTCGCGTATGCAAGATCTGCATGAGCAGAATGTAGCATCATTGTTCGAACCTGA
GACTAACAGATTGGTTCTCTATTGCACCATTCTTGTGTGCTTTGTCATTGAAATCTTTGTTAGTTTGTTAA-TTTGTATG
CACTGGATTTTGTCTTTTATCTTACTGCGTATAAATTGACTTTAGATGCACTTACTGGTGGTAAAAAAGAAACACCTCAC
GTCGCTGCACACGCAACCCGCTGCTGCCGCCACACTCACGTTCCTCTCCCCCAACCTCGCGCTACTGCAGCGCACCGCCG
CCACATTTCCTTGGCGGTGCTTGGCTGATGGAGCGTTGGCCACCGCTCATACCGCCGCTGCGACCCTGCCTCTCATCTCC
TTGGAGTTGTTGCAACAGGAGGACCGCGAGCCGCCGCCTCCCGCACTAGACGACAATGTCTAGGCCGTCAAGGATATCGT
CCTTGACACAGGAGGGGCATGGGCTGCC-AGATGGCCGTCCGCGGTGCGATCATCGTTGTCCTTCACGCCCTCTTGGATG
CAATCACCGCCACCACTTGCCCCTGTTGAGCTCATGTCGTCACTGGGAGGAGCGTGCGGCACCACCGCGACGGTCAGCCT
TCCTCTTATATCCGCTGGACAGGGCTGCCGTCCGTGGGCTGCTTGACTCCTCCGCCACCCCTCTGCCAGGAAGATGGGAA
TCTCCTGTGGGGAAAGTAAAGGTGGATGGCAGAGAAGCCCCAACTACAGGGTAACCACGGAAAGAGGAGCCAAGCATAGG
AAGGGGTGGCCATAGGAGAACAATGAACAAGGGAGGGGTTTTGTGAACTTTTGGCGGTGACAGGTTGCTCCCCTGCGAAG
TGAAGGCTGCAGCGACAA
>chr4D_1
TCTTTCAAATTAATTATTTTTTTAACTCTGCAAACTTTTTATAATCTATAAAAAGCAGAGGCGTTGTTTTTTTGTTTCCT
GAGAAATTTTATTTTTTGAGAATTTTTTCTTGAACTAGTAAGAGCAAATAGATGATGTAAAATACATCATCAAATTATAG
TTAGAGTAAAATTTACATCATCAAAAAGTGGGTTTTTACACCATCTCCAACTTCAACAGATGATGTAAAATTTAGATCAC
TAGAAAACCTCCAACTCCAACAGATGATGTAAAATTAC-ATCACTGCAGAGGCGGCCATGGTGAGGTGCGGTGCAACGAC
GTTAGTGGCCACGGGGGTCCGAG-GATTGTAGTCGTCGCTAGGTGGTCTACAGATTTGGATGCAATTTTTGTTACTTCTC
ATGTTATTGGTGCTACCAGGATGTTTGATGAATACTAGATCGGAAGTTTTTTTCTGCAGAAAAAAAAGCTACTGGTTTTT
CCCT-------------TTTTTTTATCTAAAAAAAAGTGATG-------------GAGCCAAAGAGTGAGTGGTGACCGA
GCCAGTGC------------------------------------------------------------------------
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--------------------------------------------------CCTAGTGGGCCGGCTCAGGTGTGCGCTATA
GGGGCGCCTCCCGATTGGAAGC---------------AACCAGTGAAAGGAGTCCTCTTCAGTGCGCACGCACGCAAGCA
ACCCAAACCCCTGACCCCGAGGATAGGATTTTTGCTCGTCCCCCAAATCTCTCCGGCCATGGCCTCCTTCCCGCTGGCAT
CCGCCGCCCGTTCCCTCCCCACCATAGCATCCCACCTCCCGGCAGCCGCGACCACCCGCAGCGTCTCCATCCCGGCCTCC
CCCGTCCCCGCGGCGAAGAACGCCGCCTCCTGCAGCCTCAGCACCAGGAGCCGCCGCAGGCCAACCGTTCGACGGAACGC
CGCGGAGACCTACGTCCCAGGCTCCGGCAAGTACATCGCGCCGGACTACCTCGTGAAGAAGGTGTCGGCAAAGCAGCTGG
AGGAGCTCGTCAGGGGGGAGCGGAAGGTGCCGCTCATCGTGGATTTCTACGCCACCTGGTGCGGGCCGTGCGTGCTCATG
GCGCAGGACATCGAGACGCTCGCGGTCGAGTACGAGGACAGCGCCTTGTTCGTCAAGGTGGACACGGACGAGGAGTACGA
GTTCGCAAGGGATATGCAGGTACGGGGACTGCCAACGCTGTATTTCTTCAGTCCGGATCAGGGCAAGGACGCCGTTAGGA
CCGAGGGGCTGATTCCTATTGAAATGGTCAGGAACATCATCGAGAATGAGCTGTGAGTTCTGTCTAGGCAACATAGTGTC
TGTTGTAGCTACATTATTTAGCTGAGTCTTGTAGTAGTTCTTAGTATTTATTTAGGTGCAGCCTGCGGTTGTTGATTCGA
GCTTTGTGTTGCT---CGGCCGCAGGTTTGCGTATGCAAGATCTGCATGAGCAGAATGTAGCATCAGGGTTCGAGCCCGA
GACTAACAAATTGGTTCTCTATTGCACCATTCTTGTGTGCTTTGTCATTGAAATCTTTGTTAGTTTGTTAATTTTGTATG
CACTGGATTTTGTCTTTGATCTTCCTGCGTATAAATTGACTTTAGATGCACTTACTGGTGGTAAAAAAGAAATACCTCAC
GTCGCTGCTCACGCAACCCGCTGCTGCCGCCACACTCACGTTCCTCTCCCCCAACCTCGCGCTACTGCAGCGCACCGCCG
CCACATTTCCTTGGCGGTGCTTGGCTGATGGAGCGTCGGCCACCGCTCATACCGCCGCTGCGACCCTGCCTCTCATCTCC
TTGGAGTTGTTGCAACAGGAGGACCGCGAGCCGCCGCCTCCCGCACTAGACGACAATGTCTAGGCCGTCAAGGATATCGT
CCTTGACACAGGAGGGGCATGGGCTGCCGAGATGGCCGTCCGCGGTGCGATCATCGTTGTCCTTCGCGCCCTCTTGGATG
CAGTCGCCACCACCACTTGCCCCTGTTGAGCTCATGTCGTCACTGGGAGGAGCGTGCGGCACCACCGCGACGGACAGCCT
TCCTCTTATATCCGCTGGACAGGGCTGCTGTCCGTGGGCTGCTTGACTCCTCCGCCACCCCTCTGCCAGGAAGATGGGAA
TCTCCTGTGGGGAAAGTAAAGGTGGATGGCAGAGAAGCCCCAACGACAGGGTAACCACGGAAAGAGGAGCCAAGCATAGG
AAGGGGTGGCCATAGGAGAACAATGAACAAGGGAGGGGTTTTGTGAACTTTTGGCGGTGACAGGTTGCTCCCCTGCGAAG
TGAAGGCTGCAGCGACAA
>chr4A_516
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-----------------------------------AGTGATG-------------GAGCGAACGAGTGAGTGGCGACCGA
GCCAGTGCCTACAAACCAAAGG----------------------------------------------------------
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---------------------------------------------------GTCCTCTTCAGTGCGCACGCACGCAAGCA
ACCCAAAGCCCTGACGCCGAGGATAGGATTTT-GCTCCTCCCCCAAATCCCTCCGGCCATGGCCTCCTTCCCGCTGGCAT
CCGCCGCCCGTTCCCTCCCCACCATAGCGTCCCACCTCCCGGCAGCCGCGACCACCCGCAGCGTCTCCATCCCGGCCTCC
CCCGTCCCCGCGGCGAAGAACGCCGCCTCCTGCAGCCTCAGCACCAGGAGCCGCCGCAGGCCAGCCGTTCGACGGAACGC
CGCGGAGACCTACGTGCCAGGCTCCGGCAAGTACATCGCGCCGGACTACCTCGTGAAGAAGGTGTCGGCCAGGGAGCTGG
AGGAGCTCGTCAGGGGGGAGCGGAAGGTGCCGCTCATCGTGGATTTCTACGCTACCTGGTGCGGGCCGTGCGTGCTCATG
GCGCAGGACGTCGAGACGCTCGCGGTCGAGTACGAGGACAGCGCCTTGTTTGTCAAGGTGGACACGGACGAGGAGTACGA
GTTCGCGAGGGATATGCAGGTACGGGGACTGCCCACGCTGTATTTCTTCAGCCCGGATCAGGGCAAGGACGCCGTTAGGA
CCGAGGGGCTGATTCCTATTGAAATGGTCAGGAACATCATCGAAAACGAGCTGTGAGTTTTGTCTGGGCAACGTAGTGTC
TGTAGTAGCTACATTATTTAGCTGAGTCTTGTAGTAGTGATTAGTATTTCTTTAGGTGCAGCCTGCGGTGGTTGATTCGA
GCTTTGTGTTGCTGTTCGGCCGCAGGTTCGCGTATGCAAGATCTGCATGAGCAGAATGTAGCATCAGGGTTTGAGCCTGA
GACTAACAAATTGGTTCTCTATTGCACTATTCTTGTGTGCTTTGTCATTGA-----------------------------
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>SNPs
---------------S----S---------------------------------------------------------S-
---S-----------------S----------------------S-----------------------------------
--------------------S----------S--------S---------------------------------S----S
-------S------------S--S------------SSS-----S--SS-S-------------------S----S----
----------S--------S---S----S-------------S---------------S-----S---------------
-----------S--S---S------------SS-S------S-------S--------------------S---------
----SSSSSSSSSSSSS-----------S---S---SSS-SSSSSSSSSSSSSSS-------------------------
------S----SSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---------------------SS--
SS---------------SSSSSSSSSSSSSSSSSSSS---------------------------------------S---
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-----------------------S---S---S------------------------------------------------
--S-----S---------------S-----------S--------------S----------------------------
---S----------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
----------------S------S--------------------------------------------------S--S--
----------------------S--------------------------------------------------S------
----------S--------S-----------S--------------------------------------S---------
-------------------------S---------------------------------------------------S--
--------------S---------------------------------------------------SS------S-----
--------S-----------------------------------------------------------------------
-----------------S-----S------------------------------------------------S-------
--------S-----------------------------------------------------------------------
------------------------------------S-------------------------------------------
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-----------------------------------------------------------------S--------------
--S--S--S----------------------------------------------------------------S------
----------------------------S---------------------------------------------------
--------------------------------------------S-----------------------------------
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>forward_898
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------------------------------------------------------------------------------CG
CCTTAAACTCCCGATTGC--------------------------------------------------------------
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>reverse_2226
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-----------------------------------------------------------------ACGCCCTCTTGGATG
CAATC---------------------------------------------------------------------------
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