>input_sequence_76093
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--------------------------------ATGCCCATCGCAATGCCTTCCATGCCGGCCCCGGCACTAGCCCTGGCA
CTGCTCGGTGCTTTCGGCCTCGCCATCGCCCCGGTTGTTCATTCGGCCCCCACCATCGAGGCCATCGAATCTACATGCGC
CAAGACAATACAGCCAGACTCTTGCAAACACGTCCTGCTCGCCAACATGGCCGCCGGCTCACCGGAGGTGAACAGCGTCC
CCCTAATGTCCCTGCAAGTCGCGGCAAAGCTCGCCAAGATGGCGAACGGCTTCGCCAATGCCAGGCTCACCACGGACCCG
CACCCCGCCAAATGCCTCGCAAACTGCATCGACGACATTCATAGAGTGGCCAAGGCATTCGAGGGGCTCCCAGTGGAGGC
GATTAAGCCTGGCGACGAGGCGGGGGTGCTGTCCTTCAGCTCGGAGTTCAGGGCGACATGCGGGGAAGACTGCCCGAAGC
CAATCCCCGAGAGGACCGAGGACGAACGGGCCACGCGCGACAAGTTTGTGGGTGTCATGAGAGCGATCGGCGTCATGCAG
GACCTTTTCATAACCAAGACTTGGTAA-----------------------------------------------------
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>chr1D_1_TraesCS1D01G411500
AGAGGAAAGAGACATGGTGGTGGCCGCCATTGCGCTGCACTTATTGTGTGTTGTCCCTGTGTGTTCTCCAATAGTGTGGC
TTGAGTGTGTGGAGATGGTTTAAGAGGAGATTGTAGGGAGCTATTTAAAGAGCTTGAGCCTTGAGGGAACAAGAATATAG
AGGAATTAATTGGTTGGTGTTTGCTGACAGCTGACAAGAGAGACGGTGGTGAAAAGAAATCTGCAGCTTGGATGCCATTG
GTGCAGCCAGAGGCCTTAAATGGATGAGATGTACTTGTGGCTATGGTTAGGGCTAAGGCTCGTGACTGGACCAGCTTTTG
TAAGACAAGTCGAAAGAGACCGCTGGCTTAAAATGTGTAGGCCACGGGCACGGGATG--------------------GCA
TCCTCTTGCAAGTTTTCCCAACGTACATCACACTAGGCGCTTGCCCAACAAATTTGATATCTGGCTGATCGTGCC----G
CATCTTCTTGCATGTTTTCTTTGCG-------------------------------------------------------
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----------------------------------------------------------------TGTTGGGTTTGATTGT
CAGAGTGATCGTACTTTTATGGGGTTGCATGTTCTGTGAGTAGTCCACGTGTGATGGATTTGTGTCGGTTTTTTTTCCAG
ATTTTTCGTTAACTATCTGGACAATTCTCTTATGCTTAATTAACTGACTAGGCAAATATTTTGTCTCCGTTTCAAAAAAA
TATTAATATCTGGCGACTTAACGCTGGGTTTGATCGTTCCAGAAAATTTTCGTACTGTCGGC-ACACACATGACATGATT
ACAAGAGTAAATATGTGTTTCTTTGCCTCTTGTGATTGTCCAACCCCTGAAAAATACTAGAGG-----------------
---------------------------------------TACGGCGGAACCCAGGGCAAACCAGTGAAACATGTGTGGAT
AGGAAGACCAAGTTGATTCGTGACCACCAATTAATTAGCTCCA----------------------------TCTCTAGTT
CCCTGCTTCTCTACTAAAAATAAA----GACTAGACTCATGCACAGACGCATGCAGGTTATATAAGGAAGCACCCGAGAC
CTGACTAGCTCGCTCATCAAACACCACACACAATGCCCATCGCAATGCCTTCCATGCCGGCCCCGGCACTAGCCCTGGCA
CTGCTCGGTGCTTTCGGCCTCGCCATCGCCCCGGTTGTTCATTCGGCCCCCACCATCGAGGCCATCGAATCTACATGCGC
CAAGACAATACAGCCAGACTCTTGCAAACACGTCCTGCTCGCCAACATGGCCGCCGGCTCACCGGAGGTGAACAGCGTCC
CCCTAATGTCCCTGCAAGTCGCGGCAAAGCTCGCCAAGATGGCGAACGGCTTCGCCAATGCCAGGCTCACCACGGACCCG
CACCCCGCCAAATGCCTCGCAAACTGCATCGACGACATTCATAGAGTGGCCAAGGCATTCGAGGGGCTCCCAGTGGAGGC
GATTAAGCCTGGCGACGAGGCGGGGGTGCTGTCCTTCAGCTCGGAGTTCAGGGCGACATGCGGGGAAGACTGCCCGAAGC
CAATCCCCGAGAGGACCGAGGACGAACGGGCCACGCGCGACAAGTTTGTGGGTGTCATGAGAGCGATCGGCGTCATGCAG
GACCTTTTCATAACCAAGACTTGGTAACAACGTACGGAGTACCTCGCCTAATTT--------------------------
---------TTATTTTGTTTCTTCTTCATTGGTGGATTTCCATCGTGTCTATGAGCACAGGCTTCTGGATTTTGATATAT
TCTGCATTACCATGATGTACTTATTTGTACTTTGACACTTTTTCTCTGTTTAATGAGTGGTTGTGTGCATCGCTTGATGC
AGAGGCAGGG----------------------------TCCGTTCATAAAAATAAAGATGTTCTAATTCTTTGAATCAGA
TGTATATAGACATGCTCTATTGTGTTGGCCCACTTATTTCATTGCAGTCCATATGTAATCTATATTAAAATATAAAAAGC
ATCTTATATTT----GTGAACGGAGGAAGTAAATGCCAAGAAATTAAAAGAGGAATGAAGCTGGATTTTTGTTACCAGTT
GGTGACGACCAA--------------------------------------------------------------------
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--------------------------------TATAAAGAGGTCTTGTTGTAGAAAAATTGCGCAAGGGAAGTTTTGTTG
CAAAACCTAGACCCGTCGTAGACCATTGCAACCAGCATATATTTCATAAGCATTGTTTTGCAAGGGAAGTTCTGTTGCAA
AACGTAGACCCGTCGTAGACCATTGCAACAACACATACGTTTCATAAGTATAGGCCCAGTTGCATAACCTAGTTCGACGA
AGGATAGTATGCGGGCCTTCACTTAGACGCGTGTCATGCAGAGAAGGTGGCGGACGCGGCTGCTATGATCCGCCGGGTAA
TGGTAAGTGTTTCCCATATTTTTAGTAGTTTCCGAACATATTTAATTATTTTAAATATATGTGTATATTAATTTATGTTC
TTCAAAAATCTAAAAATAATAAATTTTTTGAGGGAAAAGGTAAAAAGAATATTAATTAGCTGCAAACGGTCAGACAAATA
CGACCCATAAAGTTGTGATGTTATGCGGCGGGGGTGCTAAGACTACCCACAGTAGGAGTAACATAGATAGTAACATCACA
CATATCTAAATAAAATAGATGATGTGTCAAGCAATAAATGAAAAAATGAAGAAAAGTGGTAACATAGCTACTGT
>chr1A_1
AGAGGAAAGAGACATGGTGGTGGCCGCCATTGCGCTGCACTTATGGTGTGTTGTCCCTGTGTGTTCTCCAATAGTGTGGC
CTGAGTGTGTGGAGATGGTTTAAGAGGAGATTGTAGGGAGCTATTTAAAGAGCTTGAGCCTTGAGGGAACAAGAATATAG
AGAAATTAATTGATTGGTGTTTGCTGACAGCTGACAAGAGAGACGGTGGTGAAAAGAAATCTGCAGCTTGGATGCCATTG
GTGCAGCCAGAGGCCTTAAATGGATGAGATGTACTTGTGGCTATGGTTAGGGCTAAGGCTCGTGACTGGACCAGCTTTAG
TTAGACAAGTCGAAAGAGACCGCAGGTTTAAAAAGTGTAGGCCACGGGCACGGGATGGTTTACCAGTCCATTTGGCCGCA
TCCTCTTGCATGTTTTCCCAACGTACATCACACTGGGAGCTTGCCCAACAAATTTGATATATGGCTGATCGTGCC----G
CATCTTCTTGCATGTTTTCTTTGCGATGTACTAGCAGTGTGGAGCACTGGCGGATCTATGTGTTAGCAAAGTAGGCTATA
GTCTGCACATCCTCTAGCAAGTTTAATGAAGATTGATGGGTAAATTGGGCCATGCTAGCAAAAATAGTTAGCTTTCTTTG
TAATGGCCCACCCAGGTTTGCTGTTGTAGCTCCGCCACTGGTGTGAGGGTTGGTGGTCATTGCGTGTTGGGTTTGATTGT
TGGACTGATCATGCGTTTATGGAGTTGCATGTTTTGTGGGTAGTTCACATGTGATGGGTTTGTGTCGGTTTTTCCA--TG
ATTTTTTATTGATTAACTGGGCAATTTT-TTATGCTTAATTAACTGATTAGGCAAATATTTTGTCTCTGTTTCAAAAAAA
AATTGATATCTGGCGACTGCACGCTGAGTTTGATCGTTTCAGAAAATTTTCATACGGTCGGC-ACACACATGACATGACT
ACAAGAGTAAATATGTGTTTCTTTGCCCCTTGTGATTGTCCATCCCCTGAAAAATACTAGAGG-----------------
---------------------------------------TACGGCGGAACCCAGGGCAAACCAGTGAAACATGTGTGGAT
AGGAAGACCAAGTTGATTCGTGACCACCAGTTAATTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTT
CCCTGCTTCTCTACTAAAAATAAATAAAGACTAGACTCATGCACACACGCATGCAGGTTATATAAGGAAGCACCCGAGAC
CTGACTAGCTCGCTCATCAAACATCTCACACCATGCCCATCGCAATGCCTTCCATGCCGGCTCCGGCACTAGCCCTGGCA
CTGCTCGGTGCTTTCGGCCTCGCCATCGCCCCGGCTGTTCAGTCGGCCCCCACCATCGAGGCCATCCAAGCTACATGCGC
CAAGACAATACAGCCAGACTCTTGCAAACACGTCCTGCTCGCCAACATGGCCGCCGGCTCACCGGAGGTGAACAGTGTCC
CCCTAATGTCCCTGCAAGTCGCGGCAAAGCTCGCCAAGATGGCCAACGGCTTCGCCAATGCCAGGCTCACCACGGACCCG
CACCCCGCCAAATGCCTCGCAAACTGCATCGAAGACCTTCATAGGGTGGCCAAGGCATTTGAGGGGATCCCAGTGGAGGC
GGTTAAGCCTGGCGACGAGGCGGGGGTGCTGTCCTTCAGCTCGGAGTTCAAGCCGACATGCGGGGACGACTGCCCGAAGC
CAATCCCCGAGAGGACCGAGGACGAACGGGCCACGCGCGACAAGTTTGTGGGTGTCATGAGAGCGATCGGCGTCATGCAG
GACCTTTTCTTAACCAAGACTTGGTAACAGCGTACGGAGTACCTCGCCTAATTT--------------------------
---------TTATTTTGTTTCTTCTTCATTGGTGGATTTCCATCGTGTCTATGAGCACAGGCTTCTGGGTTTTGATATAT
TCTGCATTACCATGATGTACTTTTTTGTACTTTGACACTTTTTCTCTGTTTAATGAGTGGTTGTGTGCATCGCCTGATGC
AGAGGCAGGG----------------------------TCCGTTCATAAATATAAAGATGTTTTAATTCTTTGAATCAGA
TGTGTATAGACACGCTCTATTGTGTTGGTGCACTTATTTCATTTCAGTCCATATGTAATCTATATTAAAATATACAATGC
ATCTTATATTTATTTGTGAACGGAGGGAGTACATGCCAAGAAATTAAATGAGGAATGAAGGTGGATTTTCGTTACCAATT
GGTGACCACCAAGTCATGAAGAGCTCT-----------------------------------------------------
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>chr1B_1
AGAGGAAAGAGACATGGTGGTGGCCGCCATTGCGCTGCACTTATGGTGTGTTGTCCCTGTGTGTTCTCCAATAGTGTGGC
TTGAGTGTGTGGAGATGGTTTAAGAGGAGATTGTATGGAGCTATTTAAAGAGCTTGAGCCTTGAGGGAACAAGAATATAG
AGAAATTAATTGGTTGGTGCTTGGTGACAGCTGACAAGAGAGACGGTGGTGAAAAGAAATCTGCAGCTTGGATGCCATTG
GTGCAGCCAGAGGCCTTAAATGGATGAGATGTACTTGTGGCTATGGTTAGGGCTAAGGCTCGTGACTGGACCAGCTTTTG
TAAGACAAGTCGAAAGAGACCGCTGGCTTAAAATGTGTAGGCCACGCTCACGGGATGGTTTACCAGTTCATTTGGTCGCA
TCCTCTTGCAAGTTTTCCCAACGTACATCACACTGGGCGCTTGCCCAACAAATTCGATATCTGGCTGATCGTGCCACTTG
CATCGTCTTGCATGTTTTCTTTGCC-------------------------------------------------------
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----------------------------------------------------------------TGTTGGGTTTGATTGT
CGGAGTGATCGTGCTTTTATGGGGTTGCATGCG--------------CGTGTGATAGGTTTGTGTCGTGTTTTTTTTCTG
ATTTTTCATTAACTAACTGAATAATTCTCTTATGCTTAATTAACTGATTAGGCAAATATTTTGTCTCCGTTTGAGAAAAA
AAATTTGTTAT------------CTGGCGTTGATCGTTCCAGAAATTTTTTCATACGGTCAGTACACACATGACATGACT
ACAAGAGTAAATATGTGTTTCTTTGCCTCTTGTGATTGTCCATTCCCTGAAAAATACTAGAGGTAAATATGTGTTTCTTT
GCCTCTTGTGATTGTCCAACCCCTGAAAAACACTAGAGGTACGGCGGAACCCAGGGCAAACCAGTGAAACATGTGTGGAT
AGGAAGACCAAGTGGATTCGTGACCACCAATTAATTAGC----------------------------------------T
CCCTGCTTCTCTACTAAAAATAAA----GACTAGACTCATGCACACACGCATGCAGGTTATATAAGGAAGCACCC--GAC
CTGACCAGCTCGCTCATCAAACACCACACACCATGCCCATCGCAATGCCTTGCATGCCGGCCCCGGCACTAGCCCTGGCG
CTGCTCGGTGCTTTCGGCCTCGCCATCGCCCCGGTTGTTCATTCGGCCCCCACCATCGAGGCCATCCAATATACATGCGC
CAAGACAATACAGCCAGACTCTTGCAAACACGTCCTGCTCGCCAACACGGCCGCCGGCTCACCGGAGGTGAACAGCGTCC
CCCTAATGTCCCTGCAAGTCGCGGCAAAGCTCGCCAAGATGGCCAACGGATTCGCCAATGCCAGGCTCACCACGAACCCG
CACCCCGCCAAATGCCTCCAAAACTGCATCGACGACCTTCATAGAGTGGCCAAGGCATTTGAGGGGCTCCCAGTGGAGGC
GGTTAAGCCTGGCGACGAGGCGGGGGTGCTGTCCTTCAGCTCGGAGTTCAGGCCGACATGCGGGGACGACTGCCCGAAGC
CAATCCCCGAGAGGACCGAGGACGAACGGGCCACGCGCGACAAGTTTGTGGGTGTCATGAGAGCGATCGGCGTCATGCAG
GACCTTTTCATAACCAAGACTTGGTAACAACGTACGGAGTACCTCGCCTAATTTTATTTTGTTTGTTCTTCTCCTTTTTC
TGTGGGTTATTATTTTGTTTCTTCTTCATTGGTGGATTTCCATCGTGTCTATGAGCACAGGCTTCTGGATTACAA-----
--TGCATTACCGTGATGTACTTATTAGTACTTTGACACATTTCTT-TGTTTAATAAATAATTGTGTGCATCGCTCGATGC
AGAGGCGGGTAATCCCCCTTTTCAAGAAAAGAACTCCCTCCCTTCATAAATATAAAGATGTTCGAATGTTTTGAATCAAA
TGTATATAAACACGCTCTATTGTGGTGGTCGAC-----TCATTTCAGTTCATATGTAATTAATATTGAAATATCCAAATC
GTC------TTATTTGTTAACAGAGGATGTACATGCCAAGAAATTAAAAGAGGAATCAAGGTGGATTTTTGTTACCAGTT
GGTGAGGACCAAGTCATAAATATAAGGAAAAAGTCCAAAACAAACCTTGAATTTGTCAGGGAAAGGTAAATCAAACCCTG
AACTCTCACTCCCTGAAATCAGCACACCAAACTCCCGTATCCCGGTCTATTTTAAACCTTGAGAGGACTTAGCCGGTATT
TGCTGAATTAGGACGGCCCATTAACGTCGTCGCTCGCGCGCGCGCACTGCTCTGGGATATCTTTGTTTTTTTTTTGTTTT
TTTTCTCTTTTTTAATCATGTCTATTTTTTCTTCGTATCCAATGTACATTTTTAACGAACACATAAAATATTTTTTGATA
AACTTTTGATACTTTCATATTCTTTATGTACATTTTTAAATTAAATGTTTTCATTTTTTTTGAATACATGGTTATATTTT
TTACAAATGCATGTTTACATTTTCTTACTGACAATAAACATTTTGTAAAATCAAACAAACTCTGCTGCATGGTTCACCAT
TTTTAAATATGTAGACACTTTTTTCAAGCACATGCCAAGTATATTCTCTTAAATGTAAGACACAATTTTTTACAACATGC
ACACTTTTTCTTTACATTGTACACACATTTTTCTTTGAAAATGTCACGAACACATTTTTTTAAACTCATGAACATTATTG
AAATGCTACATTTTTCGAATGTACAAAACAATTTTTTGAATCACACAAATATTATTATACATTATATAAACATTTGTTTG
AATTGGTCCGTACATTTTCTTAAAACCTGCGATATTTTTTAGATGTCACAAAATTTTTTCTTACAATTTGTTCAGATTTT
GAAATTTGTTCCTATTTTTTAAATTTTCAAAAAGCATTCACACATTAAAATTATGTTTATGTTTCAAAAAGTGTGCGCAC
TTAAATTTTTTGTTCAGCTTTCAGAACAGAAAAGGTCGCTTCATGTCTGGTTGGCCGGCCCAGACGAGTACGTAGCCAAC
GATCCGAAGCATATTCTAAAAAAAAATTTAAAAAAATAAAAAAACGTTATTTATAAAATGTGACACAATTTTTGAAAATA
CGAAACATTTTCATAGCATGTGAAAAACTGTTGAAATCTGAATATTTTTTGTAGTTGTTTTTAGAATCACAAACAGCTTT
TTAAAATGCGAATAGAATTTCAAAATTCCAGAAAAAATTCAAAACACAAAATGAATTAAATTTGTGTGATAAATTAAAAA
CAGAAATATTTTTTAACTGCTGGAAAATTTAGAAATGCGCGAATATATTTTAAAGTTCATGATTTCTTGTTGTGTTATAG
TGGGCCGGCCCAAATTCTGAGTAGCAGGTTATCCCGGCCGGGATTTTCTTATTCCCAGTGTGCCAAACAGGTCTATGGTC
CAAAATAGACCGAGACTACATGTTCAGAGTGCCAATTTCCGGGATTCAGAGTTCAGGGTTTGATTTAGCTTTCGTCTAGA
ACTTCAAGGTTTGTTTTGGACTTTTTCCTAAATATAAAAAGGTCTTGTTGCAGAAAAATTGCGCAAGTGAAGTTTTGTTG
CAAAACGTAGAGCCGTTGTAGACCATTGCAACAAGCATATGTTTCATAAGTATTTTTTTGCAAGGGAAGTTTTGTTGCAA
AACATAGACCTGTCGTAGATCATTGCAACAACGCATACGTTTCATAAGTATAGGTCCAGTTGCAAAACCTAGTTCGACAA
AGGATGGCATGCGGGCCTTCACTTAGACGCGTGTCATGCAGAGAAGGTGGCGGACACGGCTGCTATGATCCGCTGGGTAA
TGGTAAGTGTTTCTCATATTTTTAGTAGTTTCCGAACATATTTAATTATTTTAAATATATATGTATATTAATTTATGTTC
TTCAAAAATCTAACAATAATAATATTTTTGAGAGAGAAAGTAAAATGAATATTAATTAGCTGCAAACGGTCAGACAAAAA
CG------------------------------------------------------------------------------
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>SNPs
--------------------------------------------S-----------------------------------
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--S-----------------------------------------------------------------------------
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----------------------------------S---------------------------------------------
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-S----------S--------------------S----S-----S------------S------------------S-S-
-------S-------S-------------------------------S--------------------------------
S---S-------------SS-------------------------------S---S----------------------S-
------------------------------------------S-------------------------------------
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-----------------------------------------SS-------------------------------------
---------------------------------------------S----------------------------------
-------------------------------S------------------------------------------------
------------------------------------------------------------------S-------------
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-------------------------------------------S------------------------------------
------------------------------------S----------------------S--------------------
-S--------------------------------------------------S-------------S-------------
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--------------------------------------------------S-----------------------------
------------S---------------S--------------S------------------------------S-----
-------------------------------S----------------------------S-------------------
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--------------------------------------S-----------S----------------S------------
------S----S----S---------------S-------S---------S---S----------------S--------
---S------S--------S------------S---------------------S---------S-------------S-
-----S-S-----------------------------------------------S-----------------S------
-------------S----------------------------------------------S-------------------
-------------S--------SS--------S--S--S------S--------------------------------S-
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_45
-------------------------GCCATTGCGCTGCACTTATT-----------------------------------
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>reverse_3852
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-----------CCCGTCGTAGACCATTGCAA-------------------------------------------------
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