>input_sequence_76088
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---------------------ATGCAAATGCTGCCGGAGGCGAGGGGGCACCGGA------GCAGCAGCGTCGGAGGCGG
AGGTGCCGGGGCGGGAGGGAGGGCGGACGCGCATGCGCAGGGGCACTACCGCGGGGTGCGGAAGCGGCCGTGGGGCCGGT
ACGCGGCGGAGATCCGCGACCCGTGGAAGAAGACGCGGGTGTGGCTCGGCACCTACGACACCGCCGTCGACGCGGCGCTC
GCCTACGACCGCGCCGCCGTCGCGCTGCGCGGGCCCAAGGCCAGGACCAACTTCTCCAGCGGCCACCTCGCCCCGCACCA
GCACCAGCAGCAGGCGTGCCTGC---CTCCCCGGCCGCCGGCGCGGCCCTTCGGCGGCCGCCTCGACGTCGCCCACCCGT
CCCCCTGGCACTTCGTCTACTTCCCGTCCAGGCTGCAGGAGCTCCTCGCGCAGCCGCTGCCGGCGCATGGTGC---GAGG
GACGCCGCCCCGTCGCCGCCGTCCACGGTGCTGGAGCTCCGGACGGGGCCCAGCAGCTGCCCCCAGTTCGACCTCAACGA
GCCGCCGCCGCTCATGTTTGGGTCGTGA----------------------------------------------------
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>chr1B_1_TraesCS1B01G326500
CAGGTCGCCATGCCAGTTCCCGAAAACGACTCGCCAAAATGAATGCCCCACCCGGGCCTG-----------CACGAGAAA
CGAATCAGGAAGCGACGCCCGCCCACGCCAGCGCCCCGCGCGGCTCCAGCCCAAAACCTTTTACGGCCCGGTGCGGCGGG
CCGGGCCCCGCCGCCGTCTGTGCGGCGCCG-----------------------------------TGCTGCCCCCCGACC
CACGACACCACGTGAACCACCGAACCGTGCCCCGGCACGTCGCCGTGCG----TGGTGCGTCGCTCTCGCTCGCTCGCCC
GGCCACCTGGTCTGGGTCTGGCCGGCCACGCGCGCATCCCGGGGCCACACGGG-TCAAAAGGCCTCGCGGCAC----GTA
CCATCACCACCACACCTGGCCGGCGAA-GGGCTGCACCGGCCGTACAGGTCGGC---GTACGTGACACAACGTAACGTGC
AGGCC-----------GCCTTGCCCGGCCGCGCACGGCAGCGC-----AGGGTCAGTGGGCAGCGTAGGCCGGCTACGGC
CGCGCGCGCGGTACGGCGGGATGGGGAGGACGGGACGAGACGGAGCTGGA----------TTCATGATGGACGATGGTGT
AGGGCTTGCGTCACGGCGGCAGGAGGCTGGCAG-----TGCAGTGCAGGGCGGCAGGGCCCCGCGCAGCGTCAAATCGCG
CGGCGGCTGAGGCGGAGGCG-----CCGCACGAGGCCCGGTCAGCGACAGCCTCCC---TCCCTCAAACCCCCCG-----
AGGCCTACCCTACCCGCGGTGCCCAGAGGC------CTACACCGCTAGCGCCACTGTGCCTCCCCACTTCACGAGGCGCG
CCATAGCCATGC-----CATAGCATAGAGTAGTAGGCAGCGAGGGTCCGTCCCTGTGG------GAGAGGAGAGCCAGTG
AGAGTGACCACGCTCAAGCTGCGAGCGTGCGTGCCCATCCCGGCCTCCTGCCCTGCCGCTCCGTATAA--GAGCTACCAC
TCGCCAGCCAGGGTTCTTCAGAGAAACTCCACCGCACT--------CGCCAACCATACTGTGAAGTGAGCAAGAGAGAGG
GAGA-----------GGCGCCATGCAAATGCTGCCGGAGGCGAGGGGGCACCGGA------GCAGCAGCGTCGGAGGCGG
AGGTGCCGGGGCGGGAGGGAGGGCGGACGCGCATGCGCAGGGGCACTACCGCGGGGTGCGGAAGCGGCCGTGGGGCCGGT
ACGCGGCGGAGATCCGCGACCCGTGGAAGAAGACGCGGGTGTGGCTCGGCACCTACGACACCGCCGTCGACGCGGCGCTC
GCCTACGACCGCGCCGCCGTCGCGCTGCGCGGGCCCAAGGCCAGGACCAACTTCTCCAGCGGCCACCTCGCCCCGCACCA
GCACCAGCAGCAGGCGTGCCTGC---CTCCCCGGCCGCCGGCGCGGCCCTTCGGCGGCCGCCTCGACGTCGCCCACCCGT
CCCCCTGGCACTTCGTCTACTTCCCGTCCAGGCTGCAGGAGCTCCTCGCGCAGCCGCTGCCGGCGCATGGTGC---GAGG
GACGCCGCCCCGTCGCCGCCGTCCACGGTGCTGGAGCTCCGGACGGGGCCCAGCAGCTGCCCCCAGTTCGACCTCAACGA
GCCGCCGCCGCTCATGTTTGGGTCGTGATCTCTTCCGCCGCGCAACGGTGTAGAGCGCCAGCTTCCAAGTGTAGGATCAT
GGTAGGTACTACGTACGTAGTGA----GTAGAGGTAATTTAGCGGGGTGGTGGAGAAGACTCGTCCGTGTGCTGTGTACA
TATACTGCTGC-CCATTTTAGCAAAATTTCACCTTGTGTCCGCCTTGTTTGGCGTTCGTTTTTGCTGATCTCTTGCAGTT
CTGGCCTC-CTTGGTGGTGTCTCTTTGCAAGACACTTTAATTCGAGTAATGCTACACGTACAAACGAGTTACAAGGTTTT
ATAAAGAGATTTAATTTGATTGGTCAATATATGGGAAGGCGGCCCATCCTCTGAAAATCATGGGGGGCAAGTTTATGATT
GGTTAATAGATGAAAGAAATTCTAGTCATCGTGTAATTGTGTGTAACTCTTTATATGTTTAGCATTATTGCTTTAACCCC
GAGACTTTGCGAAATGCTGTAAAAAGCGACTGGTTTTGTTTGCCGCTTCTAAGCTGAG--------CTTGTGTTCGTGCG
-------ATGGAATGGACATGGTTCCCTGAGTCGCATGTGCCCCAGGTGCTCGTCCGTGAGCCCAAGCGTACGTGCGGTG
GGC-GC--------------------ACGAATGCGTCAGTTTTGGCTGTACAGAGGTTGTTAACCACAGCGTCATTGTGT
TTATAAATTGTTCCTGTCGCAGTAAGCCCCAATGGAACACGCGACGTATAAATTTATAAGCGAAACGTCCAACTATTTCA
AGTTAATGATCCTTGTGCTGAATTTTCTGTAGTTATATGTGAGAAGTGATGTTGAGATTATTGTTATTTTATGTTTTGAG
ATTACTGTC---ATTGTTATTCAGTTGTCTAGCAGTTGTAGAAACTATGACCGGTACA----------------------
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-------------------------------------------------------------ATTCCAATTACTCTTCAGT
TTCAATGCGTTATGTGTCAGAACTTACTCCAAAGAATAAAGCTTCCTAGTGCAGAAGGATATATACAAAGAATTGTCACC
TTCAGTTTAAAAACAATTGTTACCTTCAAAGCTACT
>chr1D_1
CAGGTCGCCATGCCAGTTCCCGAAAACGACTCGCCAAAATGAATGCCCCACCCGGGCCTGCGCTGCGCTCGCACGAGAAA
CGAATCAGGAAGCGACGCCCGCCCACGCCAGCGCCCCGCGCGGCTCCAGCCCAAAACCTTTTACGGCCCGGCGCGGCGGG
CCGGGCCCCGCCGCCGTCTGTGCGGCGCCGCACGCGCGGGGCCTCCGACCCCCACCCCGCAGCCGTGCTGCCCCCCGACC
CACGACACCACGTGAACCACCGAACCGTGCCCCGGCACGTCGCCGTGCGTGCGTGGTGCGTCGCTCTCGCTCGCTCGGCC
GGCCACCTGGTCTGGGTCTGGCCTGCCACACACGCATCCCGGGGCCACACGGG-TCAAAAGGCCCCGCGGCACATACGTA
CCATCAC-----CACCTGGCCGGCGAA-GGGCTGCACCGGCCGTACAATGCGACGTAGTACGTGACACAACGTAACGTGC
AGGCCAGGCTCAGGCCGCTTTGCCCGGCCGCGCACGGCAGCGC-----AGGGTCAGTGGGTAGCGTAGGCCGGCTACGGC
CGCGCGCGCGGTACGGCGGGACGGGGAGGACGGGACGGGACGGGGTTGGA----------CGCATGATG---GATGGTGT
AGGGCTTGCGTCACGGCGGCAGGAGGCTGGCAGTGCAGTGCAGGGCGGGGCGGCAGGGCCCCGCGCAGCGTCAAATCGTG
CGGCGGCTGGGGCGGAGGCG-----CCGCACGAGGCCCGGTCAGCGACAGCCTCCC---TCCCTCAAACCCCCGACGCCT
ACCCCTACTCTACCCGCGGTGCCCCAGAGGCCTAC-----GCCGCTAGTGCCACTGTGCCTCCCCACTTCACGAGGCGCG
CCATAGCCATGC-----CATAGCATAG---AGTAGGCAGCGAGGGTCCGTCCGTCCCTGTGGGAGAAAGGAGAGCCAGTG
AGAAGGACCACGCTCAAGCTCAA-----GCGTGCCCATCCCGGCCTCCTGCCCTGCCGCTCCGTATAAGAGAGCTACCAC
TCGCCAGCCAGGGTTCTTCAAAGAAACTCCACCGCACTCGCCAAGACGCCAACCATACTGTGAAGTGAGCGTAG--GAGG
GAGA-----------GGCGTCATGCAAATGCTGCCGGAGACGAGGGGGCACCGGA------GCAGCGGCGTCGGAGGCGG
CGGCGCCGGGGCGGGAGGGAGGGCGGACGCGGCGGCGCAGGGGCACTACCGCGGGGTGCGGAAGCGGCCGTGGGGCCGGT
ACGCGGCGGAGATCCGGGACCCGTGGAAGAAGACGCGGGTGTGGCTCGGCACCTACGACACCGCCGTCGACGCCGCGCTC
GCCTACGACCGCGCCGCCGTCGCGCTGCGCGGGCCCAAGGCCAGGACCAACTTCGCCGGCGGCCACCTCGCCCCGCACCA
GCAGCAGCAG---GCGTGCCTCCTGGCTCCCCGGCCGCCGGCGCGGCCCTTCGGCGGGCGCCTCGACGTCGCCCACCCGT
CCCCCTGGCACTTCGTCTACTTCCCGTCCAGGCTGCAGGAGTTCCTCGCGCAGCCGCTGCCGGCGGGTGACGC---GAGG
GACGCCGCCCCGTCGCCGCCGTCCACGGTGCTGGAGCTCCGGACGGGGCCCAGCAGCTGCCCCCAGTTCGACCTCAACGA
GCCGCCGTCGCTCATGTTTGGGTCGTGATCTCTTCCGCCGCGCAGGGGTGTAGAGCTCCAACTTCCAAGTGTAGGATCAT
GGTAGGTACTACGTACGTAGCGA----GTAGAGGTAATTTAGCGGGGTGGTGGAGAAGACTCGTCCGTGTGCTGTGTACA
TAAACTGCTGC-CCATTTTAGCAAAATTTCACCTTGTGT-CGCCTTGGTTGGTGTTCGTTTTTGCTGATCTCTTGCAGTT
CTGGCCTC-CTTGGTGGTGTCTCTTTGCAAGACACTTTAACCCGA-----------------------------------
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---------------------------GACTGGTTTTCTTTGCCGCTTCTAAGCTGAG--------TTAGTGTTCGTGCG
ATATCCCATGGAATGGACATGGTTCCCTGAGTCGCATGTGGCCCAGGTGCTCGTCCGTGAGCCCAAGCGTACGTGCGGTG
TGGTGC--------------------ACGAATGCGTCAGTTTTGGCTCCACAGAGGTTGTTAACCGCAGCGTCATTGTGT
TTATAAATTGTTCCTGTCGCAGTAAGCCCCAATGGAGCACGCGAAGTATAAATTTATAAGCGAAACGTCCAACTATTTCA
AGTTAATGATCCTTGTGCTGAATTGTCTGTAATGATATGTGAGAAGTGATGTTGTGATTATTGTTATTTTATGTTTTGAG
ATTACTGTTATTATTGTTATTCGGTTGTCTAGCAGTTGTAGAAACTATGACCAGTACAATTCCAATTCAGTTTGTCTAAT
TCACATCTAGATGTTTTTTTAAGGATGTCACATCTAAGATCCCACAAATATATAATGCAACAACAAGAAACAAAAAAACT
AGAAAAAAAATAGACCACAAAATAGAGTAGACATCAGCTTAGATGTGTCCTAGATAGACCCATTCCAATTACTCTTCAAT
TTCAATGCGCTATGT--CAGAACTTACTCCAAAGAATAAAGCTTCCTAGTGCAGAAGGATA-------------------
------------------------------------
>chr1A_1
CAGGTCGCCATGCCAGTTCCCGAGAACGACTCGCCAAAGCGAATGCCCCCGCCCCGCACCC----------CACGAGAAA
CGAATCAGGCAACGACGCCCGCCC------------CGCGCGGCTCGAGCCCCAAACCT---------CGGCGCGGCGAG
CCGGGCCCCGCCGCCGTCTGTGC------------------------------------------------CCCCCGGCC
CACGACGCCATGTGAACCACCGAACCGTGCCCCGGCACGTCGCCGTGCGC---------------------CGCTCGCAC
CTCCACCTGGTCTGCCCGGGGGCG----CACGCGCATCCCGGGGCCACACGGGGTCAAAAGGCCTCGCGGCACGTACGTA
CCATCAC-----CACCTGGCCGGCGAAGGGGCTGCACCGGCCGTACAGCGCGACGTAGTACGTGACACAACGTAACGTGC
AGGCC-----------GCTTTGCCCGGCCGCGCACGGCAGCGCGGCGCAGGGGCAGTGGGTGGCGTAGGCCGGCTACGGC
CGCGCGCTGGGTACGGCGGGATGGGGAGGACGGGACGGGACGGGACGGGACGGGGGCGGGCGCATGATG---GATGGTGT
AGGGCTTGCGTCACGGCGGCAGGGGGCTGGCAGG---GTGCAGTGCAGGGCGGCAGGGCCCCGCGCAGCGTCAAATCGCG
CGGCGGCTGGGGCGGAGGCGCCGCACCGCACGAGGCCCGGTCAGCGACAGCCTCCCCCCTCCCTCAAACCCCCCG-----
ACGCCTACCCTACCCGCGGTGCCCCAGAGGCCTACTCTACGCCGCTAGCGCCACTGTGCCTCCCCACTTCACGAGGCGCG
CCATAGCCATGCCGTAGCATAGCATAG---AGTAGGCAGCGAGGGT----------------------------------
-----GACCGAGCTCAAGCTCACGC--TGCGTGCCCATCCCGGCCTCCTGGCCTGCCGCTCCGTATAAGA--GCCACCAC
TCGCCAGCCAGGGTTCTTCGGAGAAACTCCACCGCACT--------CGCCAGCCATACTGTGAAGCGAGCGAGCGAGAGA
GGGAGAGGGAGAGGCGGCGTCATGCAAATGCTGCCGGAGGCGAGGGGGCACCACCGGAGCGGCGGCGGCGTCGGAGGCGG
CGGTGCCGGGGCGGGAGGGAGGGCGGACGCGGCGGCGCAGGGGCACTACCGCGGGGTGCGGAAGCGGCCGTGGGGCCGGT
ACGCGGCGGAGATCCGCGATCCGTGGAAGAAGACGCGGGTGTGGCTCGGCACCTACGACACCGCCGTCGACGCCGCGCTC
GCCTACGACCGCGCCGCCGTCGCGCTGCGCGGGCCCAAGGCCAGGACCAACTTCGCCGGCGGCCACCTCGCCCCGCACCA
GCAGCAGCAGCAGGCGTGCCTCCTGCGTCCCCGGCCGCCGGCGCGGCCCTTCGGCGGCCGCCTCGACGTCGCCCACCCGT
CCCCCTGGCACTTCGTCTACTTCCCGTCCAGGCTGCAGGAGTTCCTCGCGCAGCCGCTGCCGGCGCATGACGGGAGGAGG
GACGCCGCCCCGTCGCTGCCGTCCACGCTGCTGGAGCTCCGGACGGGGCCCAGCAGCTGCCCCCAGTTCGACCTCAACGA
GCCGCCGTCACTGATGTTTGGGTCGTGATCTCTTTCGCCGCGCAACGGTGTAGAGCTCCAGCTTCCAAGTGTAGGATCAT
GGTAGGTACTACGTACGTAGTGAGCATGTAGAGGTAAGTTAGCGGGGTGGAGGAGAAGACTCGTCCGTGTGCTGTGTACA
TATACTGCTCTGCCATTTTAGCAAAATTTCACCTTGTGT-CGCCTTGGCTGGTGTTCGTTCTTGCTGATCTCTTGCAGTT
CTGGCCTCCCTTGGTGGTGTCTCTTTGCAAGACACTTTAACCCGA-----------------------------------
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---------------------------GACTTGCGAAATGCTGTAAAAAGCGACTCACTTGAGTTTTTAGTGTTCGTGCG
GTATCCCATGGAATGGACATGGTTTCCTCAGTCGCATGTGCCCCAGGTGCTCGTCCGTGAGCCCAAGCGTACGTGCACGA
ATGCGTCAGTTTTTTTTTTCGAGCAGACGAATGCGTCGGTTTTGGCTGTACAGAGGTTGTTAACCACAGCGTCATTGCGT
TTATAAATTGTTCCTGCCGCAGTACGCCCTAATGGAGCACGCAACGTATAAGTTTATAAGCGAAACGTCCAACTATTTCA
AGTTAATGATCCTTGTGCTGCATTTTCTGTAATGATATGTGAGAAATGATGTTGAGATTATTGTTATTTTATGTTTTAGG
ATTACTG---TTATTGTTATTCGGTTGTCTAGAAGTTGTAGAAACTATGACCGGTACA----------------------
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-------------------------------------------------------------ATTCCAATTACTCTTCAGT
TTCAATGCGCTATGT--CAGAACTTACTCCAAAGAATAAAGCTTCCTAGTGCAGAAGGATATACACAAAGAATTATCACC
TTCA--------------------------------
>SNPs
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-----------------------------------------------------------------------S--------
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-----------------------------S--------------------------------------------------
-------SSSSS------------------------------------SS--S---------------------------
------------------S-----------------------------------------S-------------------
-------------------------------------S-----S----------------SS-------SSS--------
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---------S----------------------------------------------------------------------
-S----------------------SSSS-S----------S---------------------------------------
---------------------------SSS----------------------S-SSSS--------S-------------
---SS---------------SSSSSSS-----------------------------------------------------
----------------------------------------------------------------------S--S------
-------------------S----------------------------------------------S-------------
S------------------------------SSS----------------------------------------------
-------------------------------------------------------------------------S------
------------------------------------------------------S--S----------------------
---S-----------------S----------------------------------------------------------
-----------------------------------------S---------------------------SS---------
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-------S------------------------------------------------S-----------------------
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---------------------------------------S-------S----S---------------------------
----------------------------------------SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------------------------S-S-----------
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S-S-----------------------------------------------------------------------------
------------------------------------S-------------------------------------------
-------------------------------S-S----------------------------------------------
--------S-------------S---------------------------------------------------------
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---------S-----SS----------------------------------------------S----------S-----
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_152
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----------------------------------------------------AAAACCTTTTACGGCCCGGT--------
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>reverse_2156
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---------------------------------------------------------------------------ACCCC
GAGACTTTGCGAAAT-----------------------------------------------------------------
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