>input_sequence_76086
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------------------------ATGCCCATCGCAATGCCTTCCATGCCGGCTCCGGCACTAGCCCTGGCACTGCTCGG
TGCTTTCGGCCTCGCCATCGCCCCGGCTGTTCAGTCGGCCCCCACCATCGAGGCCATCCAAGCTACATGCGCCAAGACAA
TACAGCCAGACTCTTGCAAACACGTCCTGCTCGCCAACATGGCCGCCGGCTCACCGGAGGTGAACAGTGTCCCCCTAATG
TCCCTGCAAGTCGCGGCAAAGCTCGCCAAGATGGCCAACGGCTTCGCCAATGCCAGGCTCACCACGGACCCGCACCCCGC
CAAATGCCTCGCAAACTGCATCGAAGACCTTCATAGGGTGGCCAAGGCATTTGAGGGGATCCCAGTGGAGGCGGTTAAGC
CTGGCGACGAGGCGGGGGTGCTGTCCTTCAGCTCGGAGTTCAAGCCGACATGCGGGGACGACTGCCCGAAGCCAATCCCC
GAGAGGACCGAGGACGAACGGGCCACGCGCGACAAGTTTGTGGGTGTCATGAGAGCGATCGGCGTCATGCAGGACCTTTT
CTTAACCAAGACTTGGTAA-------------------------------------------------------------
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>chr1A_1_TraesCS1A01G403700
AGAGGCCTTAAATGGATGAGATGTACTTGTGGCTATGGTTAGGGCTAAGGCTCGTGACTGGACCAGCTTTAGTTAGACAA
GTCGAAAGAGACCGCAGGTTTAAAAAGTGTAGGCCACGGGCACGGGATGGTTTACCAGTCCATTTGGCCGCATCCTCTTG
CATGTTTTCCCAACGTACATCACACTGGGAGCTTGCCCAACAAATTTGATATATGGCTGATCGTGCC----GCATCTTCT
TGCATGTTTTCTTTGCGATGTACTAGCAGTGTGGAGCACTGGCGGATCTATGTGTTAGCAAAGTAGGCTATAGTCTGCAC
ATCCTCTAGCAAGTTTAATGAAGATTGATGGGTAAATTGGGCCATGCTAGCAAAAATAGTTAGCTTTCTTTGTAATGGCC
CACCCAGGTTTGCTGTTGTAGCTCCGCCACTGGTGTGAGGGTTGGTGGTCATTGCGTGTTGGGTTTGATTGTTGGACTGA
TCATGCGTTTATGGAGTTGCATGTTTTGTGGGTAGTTCACATGTGATGGGTTTGTGTCGGTTTTTCCA--TGATTTTTTA
TTGATTAACTGGGCAATTTT-TTATGCTTAATTAACTGATTAGGCAAATATTTTGTCTCTGTTTCAAAAAAAAATTGATA
TCTGGCGACTGCACGCTGAGTTTGATCGTTTCAGAAAATTTT-CATACGGTCGGCACACACATGACATGACTACAAGAGT
AAATATGTGTTTCTT--------------------------------------------------------TGCCCCTTG
TGATTGTCCATCCCCTGAAAAATACTAGAGGTACGGCGGAACCCAGGGCAAACCAGTGAAACATGTGTGGATAGGAAGAC
CAAGTTGATTCGTGACCACCAGTTAATTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTTCCCTGCTT
CTCTACTAAAAATAAATAAAGACTAGACTCATGCACACACGCATGCAGGTTATATAAGGAAGCACCCGAGACCTGACTAG
CTCGCTCATCAAACATCTCACACCATGCCCATCGCAATGCCTTCCATGCCGGCTCCGGCACTAGCCCTGGCACTGCTCGG
TGCTTTCGGCCTCGCCATCGCCCCGGCTGTTCAGTCGGCCCCCACCATCGAGGCCATCCAAGCTACATGCGCCAAGACAA
TACAGCCAGACTCTTGCAAACACGTCCTGCTCGCCAACATGGCCGCCGGCTCACCGGAGGTGAACAGTGTCCCCCTAATG
TCCCTGCAAGTCGCGGCAAAGCTCGCCAAGATGGCCAACGGCTTCGCCAATGCCAGGCTCACCACGGACCCGCACCCCGC
CAAATGCCTCGCAAACTGCATCGAAGACCTTCATAGGGTGGCCAAGGCATTTGAGGGGATCCCAGTGGAGGCGGTTAAGC
CTGGCGACGAGGCGGGGGTGCTGTCCTTCAGCTCGGAGTTCAAGCCGACATGCGGGGACGACTGCCCGAAGCCAATCCCC
GAGAGGACCGAGGACGAACGGGCCACGCGCGACAAGTTTGTGGGTGTCATGAGAGCGATCGGCGTCATGCAGGACCTTTT
CTTAACCAAGACTTGGTAACAGCGTACGGAGTACCTCGCCTAATTT----------------------------------
-TTATTTTGTTTCTTCTTCATTGGTGGATTTCCATCGTGTCTATGAGCACAGGCTTCTGGGTTTTGATATATTCTGCATT
ACCATGATGTACTTTTTTGTACTTTGACACTTTTTCTCTGTTTAATGAGTGGTTGTGTGCATCGCCTGATGCAGAGGCAG
GGTCCGTTCATAAATATAAAGATGTTTTAATTCTTTGAATCAGATGTGTATAGACACGCTCTATTGTGTTGGTGCACTTA
TTTCATTTCAGTCCATATGTAATCTATATTAAAATATACAATGCATCTTATATTTATTTGTGAACGGAGGGAGTACATGC
CAAGAAATTAAATGAGGAATGAAGGTGGATTTTCGTTACCAATTGGTGACCACCAAGTCATGAAGAGCTCTAACACCGCC
CGTGTTAGGAGATGCGCGTGCATGTGACGTACGGGAATTGGGTTTTCGGCGAAACATGGCGATTGCATGAATTTTGAAGT
AAATTATCCTTTTGAAAATTATGAACAATTTAAAAGTACACAAAAATGTTTTACTTGTTAATACGGACTAATATTTGTAG
TAGTTCCCGGACATATTTAATTATTTTACAAGCAAAAAGGGCCGTGCGTTGCAACGGAAAAAAAATCATAATCTCCAATG
GTCATGACCACATAGTGGCCACTCTTAATTTCGTGAGATCATGAACAATTTTTGAAATCATGAACATTTTTTAGAACTCG
TGAACATATTTGAAATTATGAATATTTTTCAAATTATTGAATTAGCATGCTGAGGTTCTCCAAGTAGATGAGGATGGAGA
TATGCTTCAGGCCGACGCTCCAAGCAAACCTTTGGATCGCCGAGTGATGCACGTGAAGTTGTCGCGCAGCACCTTCCAAT
GGTGCTTGGCGCCTCCCTTGCCAAGCCCCGTGCCTCCGTTGCCGCGCTCAGACATGGCTGACAATCTCTCCTTCATTTGA
GCTGCGACCGAATG
>chr1D_1
AGAGGCCTTAAATGGATGAGATGTACTTGTGGCTATGGTTAGGGCTAAGGCTCGTGACTGGACCAGCTTTTGTAAGACAA
GTCGAAAGAGACCGCTGGCTTAAAATGTGTAGGCCACGGGCACGGGATG--------------------GCATCCTCTTG
CAAGTTTTCCCAACGTACATCACACTAGGCGCTTGCCCAACAAATTTGATATCTGGCTGATCGTGCC----GCATCTTCT
TGCATGTTTTCTTTGCG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGTTGGGTTTGATTGTCAGAGTGA
TCGTACTTTTATGGGGTTGCATGTTCTGTGAGTAGTCCACGTGTGATGGATTTGTGTCGGTTTTTTTTCCAGATTTTTCG
TTAACTATCTGGACAATTCTCTTATGCTTAATTAACTGACTAGGCAAATATTTTGTCTCCGTTTCAAAAAAATATTAATA
TCTGGCGACTTAACGCTGGGTTTGATCGTTCCAGAAAATTTT-CGTACTGTCGGCACACACATGACATGATTACAAGAGT
AAATATGTGTTTCTT--------------------------------------------------------TGCCTCTTG
TGATTGTCCAACCCCTGAAAAATACTAGAGGTACGGCGGAACCCAGGGCAAACCAGTGAAACATGTGTGGATAGGAAGAC
CAAGTTGATTCGTGACCACCAATTAATTAGCTCCA----------------------------TCTCTAGTTCCCTGCTT
CTCTACTAAAAATAAA----GACTAGACTCATGCACAGACGCATGCAGGTTATATAAGGAAGCACCCGAGACCTGACTAG
CTCGCTCATCAAACACCACACACAATGCCCATCGCAATGCCTTCCATGCCGGCCCCGGCACTAGCCCTGGCACTGCTCGG
TGCTTTCGGCCTCGCCATCGCCCCGGTTGTTCATTCGGCCCCCACCATCGAGGCCATCGAATCTACATGCGCCAAGACAA
TACAGCCAGACTCTTGCAAACACGTCCTGCTCGCCAACATGGCCGCCGGCTCACCGGAGGTGAACAGCGTCCCCCTAATG
TCCCTGCAAGTCGCGGCAAAGCTCGCCAAGATGGCGAACGGCTTCGCCAATGCCAGGCTCACCACGGACCCGCACCCCGC
CAAATGCCTCGCAAACTGCATCGACGACATTCATAGAGTGGCCAAGGCATTCGAGGGGCTCCCAGTGGAGGCGATTAAGC
CTGGCGACGAGGCGGGGGTGCTGTCCTTCAGCTCGGAGTTCAGGGCGACATGCGGGGAAGACTGCCCGAAGCCAATCCCC
GAGAGGACCGAGGACGAACGGGCCACGCGCGACAAGTTTGTGGGTGTCATGAGAGCGATCGGCGTCATGCAGGACCTTTT
CATAACCAAGACTTGGTAACAACGTACGGAGTACCTCGCCTAATTT----------------------------------
-TTATTTTGTTTCTTCTTCATTGGTGGATTTCCATCGTGTCTATGAGCACAGGCTTCTGGATTTTGATATATTCTGCATT
ACCATGATGTACTTATTTGTACTTTGACACTTTTTCTCTGTTTAATGAGTGGTTGTGTGCATCGCTTGATGCAGAGGCAG
GGTCCGTTCATAAAAATAAAGATGTTCTAATTCTTTGAATCAGATGTATATAGACATGCTCTATTGTGTTGGCCCACTTA
TTTCATTGCAGTCCATATGTAATCTATATTAAAATATAAAAAGCATCTTATATTT----GTGAACGGAGGAAGTAAATGC
CAAGAAATTAAAAGAGGAATGAAGCTGGATTTTTGTTACCAGTTGGTGACGACCAATATAAAGAGGTCT-----------
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>chr1B_1
AGAGGCCTTAAATGGATGAGATGTACTTGTGGCTATGGTTAGGGCTAAGGCTCGTGACTGGACCAGCTTTTGTAAGACAA
GTCGAAAGAGACCGCTGGCTTAAAATGTGTAGGCCACGCTCACGGGATGGTTTACCAGTTCATTTGGTCGCATCCTCTTG
CAAGTTTTCCCAACGTACATCACACTGGGCGCTTGCCCAACAAATTCGATATCTGGCTGATCGTGCCACTTGCATCGTCT
TGCATGTTTTCTTTGCC---------------------------------------------------------------
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--------------------------------------------------------TGTTGGGTTTGATTGTCGGAGTGA
TCGTGCTTTTATGGGGTTGCATGCG--------------CGTGTGATAGGTTTGTGTCGTGTTTTTTTTCTGATTTTTCA
TTAACTAACTGAATAATTCTCTTATGCTTAATTAACTGATTAGGCAAATATTTTGTCTCCGTTTGAGAAAAAAAATTTGT
TAT------------CTGGCGTTGATCGTTCCAGAAATTTTTTCATACGGTCAGTACACACATGACATGACTACAAGAGT
AAATATGTGTTTCTTTGCCTCTTGTGATTGTCCATTCCCTGAAAAATACTAGAGGTAAATATGTGTTTCTTTGCCTCTTG
TGATTGTCCAACCCCTGAAAAACACTAGAGGTACGGCGGAACCCAGGGCAAACCAGTGAAACATGTGTGGATAGGAAGAC
CAAGTGGATTCGTGACCACCAATTAATTAGC----------------------------------------TCCCTGCTT
CTCTACTAAAAATAAA----GACTAGACTCATGCACACACGCATGCAGGTTATATAAGGAAGCACCCGA--CCTGACCAG
CTCGCTCATCAAACACCACACACCATGCCCATCGCAATGCCTTGCATGCCGGCCCCGGCACTAGCCCTGGCGCTGCTCGG
TGCTTTCGGCCTCGCCATCGCCCCGGTTGTTCATTCGGCCCCCACCATCGAGGCCATCCAATATACATGCGCCAAGACAA
TACAGCCAGACTCTTGCAAACACGTCCTGCTCGCCAACACGGCCGCCGGCTCACCGGAGGTGAACAGCGTCCCCCTAATG
TCCCTGCAAGTCGCGGCAAAGCTCGCCAAGATGGCCAACGGATTCGCCAATGCCAGGCTCACCACGAACCCGCACCCCGC
CAAATGCCTCCAAAACTGCATCGACGACCTTCATAGAGTGGCCAAGGCATTTGAGGGGCTCCCAGTGGAGGCGGTTAAGC
CTGGCGACGAGGCGGGGGTGCTGTCCTTCAGCTCGGAGTTCAGGCCGACATGCGGGGACGACTGCCCGAAGCCAATCCCC
GAGAGGACCGAGGACGAACGGGCCACGCGCGACAAGTTTGTGGGTGTCATGAGAGCGATCGGCGTCATGCAGGACCTTTT
CATAACCAAGACTTGGTAACAACGTACGGAGTACCTCGCCTAATTTTATTTTGTTTGTTCTTCTCCTTTTTCTGTGGGTT
ATTATTTTGTTTCTTCTTCATTGGTGGATTTCCATCGTGTCTATGAGCACAGGCTTCTGGATTACAA-------TGCATT
ACCGTGATGTACTTATTAGTACTTTGACACATTTCTT-TGTTTAATAAATAATTGTGTGCATCGCTCGATGCAGAGGCGG
GT------------------------------------------------------------------------------
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>SNPs
----------------------------------------------------------------------S--S------
---------------S--S------S---------------------------------S-------S------------
--S--------------------------S----------------------S---------------------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---S---
--S---S-------S----------S----S-----S---S------------------------SSS----------S-
--S-S-------S-----S----------------------------------------S----------------S---
----------SS------S-----------S-------------------------------------------------
---------------------------------------------------------------------------S----
----------S---------------------------------------------------------------------
---------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
----------------SSSS------------------------------------------------------------
---------------S-S-----------------------------------S--------------------------
--------------------------S------S---------------------------S------------------
-------------------------------------------------------------------S------------
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------------------------S-----------S---------------------S---------------------
------------------------------------------S-------------------------------------
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-S-------------------S----------------------------------------------------------
------------------------------------------------------------S-------------------
--------------S--------------------------------------------------S--------------
--------------S-----------S--------------------S--------S---------------SS------
-------S------------------------------S--S-------------SSSS-----------S----S----
------------S-----------S--------S-------S--------S-----SSS-SSS--SS--SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_368
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----------------------------TGGGTAAATTGGGCCATGCT--------------------------------
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>reverse_2104
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-----------------------GTGACGTACGGGAATTGGGT-------------------------------------
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