>input_sequence_76050
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATGAGCTCTCCGGCGAGGTCGACCGTCTCGGCGGCGAGCGCGGGA
GGCGCGATCGCGATCTCCGCTGCCGACGACCTCGCCGACTCGATCGACGCGCTCTACCGCAAGGACGAGGCCATGGCCGG
TAAATCCATCGCCATCGGCACCTCGCAACCC-TAGTCCCCTTCCACTTTTCTCCTCCGCCGCTCGGTTAAGCAGTCGAAT
TGGTCTGGCTGGTCTTCCCCCCGCAGAGCTCAAGTCGGAGGTCATGGAGGCGCTGCAAAAGGAGGTCAGGTCGCTCGACG
ACAACAGCTGGATGTTCGCCGCCCCGCGCTCCCGCATCAACCTCATCTCCAGGCCAGGTAACAACAC----------CAT
AAATCTCACTCAAATTCAAAATGAGCATAAGAATTTAGGGTTGATTATGGTTTATTGTTC--------GAATTGATACTG
TT-TGCAATACGATCACAAGAGTTTATGTTTG------------------------TTTCCGGCTTGGCATGTTCTTCTC
AGGTGGTTACCTGCCCAAGCAACAGGGGAAAATTGCGGAGCTGGATCAAGCGTCCAAGAAGACAAGGAACTGCTAG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr1D_1_TraesCS1D01G197800
ACACAGTT-AGGTGCCAAGACAAACACCCTTCCAGTTCAAACCCCTTCCTCCC-------CAACTCCTCGACAAAACCTT
TTGTGCTAGTTCAAACCCCCT-ATAAACCAAAAATGTTCACCAGTGCTAATGTTTGGTGTTG---TACTACCACATTCCC
AAGCTCCCAACTATCTAAGCATGGCGATGTGACCCCAAACAGAAATCTGAATT-GGTTAATGGAATGATAAACATTTGAA
ACAAATCATGTGCATTTCACCACAAACTGCATCGTGCGTACATA------------------------------------
--ATAACAAGAATCACCCTGACCTCTCCATTCCAGGAATGGCGGCGGAAGCAACCGTGCTAGTCCTCGACCTCGACCACC
TTCTTGGGCTCTGCGCGACACCAGTCAACCGAACCATATCAGCCAGTGAAACAAACCGAGACCATAGCCTGAAGGCAGAG
TTAGGATTCGGGTGGCGGTACCGTGGAGGTCCGCCGGGCGGTGGTCCTTGCCCCACCCGACGCCGCGGGTGGACTCGAGG
TACTGGTCGACGAGGTGGCGGCACTTCTGGTGGTGGTTGACGCCCTCGATCCGGTAGCACCAGCGGAGGCGGTCGCGGAT
GATCTTGGCGGTCTCGATCTGGATCCACTTCTCCCGCACCAGGTGCTCCCTGTACTCCAGCATCGCCACCGGGTCCCCGT
ACGGGTTCTTCGGGTCGAAGTCATCCGGCGGCCTCTCGTCGAACTCGACCTTGGCCTTCCGCACCATCTCCGATCGCCTG
CTCC---GCCGCCGCCGCCGGCCTCTCTCTCTCCTCCCTTCTCTTCTTGGCCTCTAGGGTGGATGGATCTCGTCGTGGGG
ATTGGAGAATGGGGGAGAGAGACAAACGGATCGCTTCCCAGTTCCCACTT----ACAGAGTGCAGTAGCAGCCCGGCCCA
TTTA-------------CACGGCCCACTTGGCGGGGTCCTATAATTCCGTT----GTCTGACCAGTGACCACCCCTACGG
AAAGGGCGCCGCGTTTCAAACGAGGCCGATCTCCGATGAGCTCTCCGGCGAGGTCGACCGTCTCGGCGGCGAGCGCGGGA
GGCGCGATCGCGATCTCCGCTGCCGACGACCTCGCCGACTCGATCGACGCGCTCTACCGCAAGGACGAGGCCATGGCCGG
TAAATCCATCGCCATCGGCACCTCGCAACCC-TAGTCCCCTTCCACTTTTCTCCTCCGCCGCTCGGTTAAGCAGTCGAAT
TGGTCTGGCTGGTCTTCCCCCCGCAGAGCTCAAGTCGGAGGTCATGGAGGCGCTGCAAAAGGAGGTCAGGTCGCTCGACG
ACAACAGCTGGATGTTCGCCGCCCCGCGCTCCCGCATCAACCTCATCTCCAGGCCAGGTAACAACAC----------CAT
AAATCTCACTCAAATTCAAAATGAGCATAAGAATTTAGGGTTGATTATGGTTTATTGTTC--------GAATTGATACTG
TT-TGCAATACGATCACAAGAGTTTATGTTTG------------------------TTTCCGGCTTGGCATGTTCTTCTC
AGGTGGTTACCTGCCCAAGCAACAGGGGAAAATTGCGGAGCTGGATCAAGCGTCCAAGAAGACAAGGAACTGCTAGGGAT
TATAGGCTTTCCATCCAGGCTGTGCTCTTAGGGGCTATCA--------------CCTTTAGTT---------------CA
TTCTGCTAAATCATTTCCAAGTACATGCTAGGATATTTAAGTGACCCAATTGTGATGCTGCTGCTCATAACTTGTTCAAA
TCAGTTTCAGGTACATGCCATGATTTACATTTAAGTAATCCAAGTGTTATGATGATGTGAG----TTGTGCCTTTTGCCA
CCAAATCCTTGCAAATTGATCCA-AAACAAATTCTCAGATAAGTCTTGAGATGCAGTGTGTCACACATTGTAGGTGCAAA
TGTAAAATATTGATGACCCCCCCCCTCCCCCAGGCGACTAGGGTTCCTCCCCCCACTCCTCCCCGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCGGCGTGGCGGTGCTGGTGGCCGGCGGCGCCCGGGCGG
>chr1A_1
ACACAGTTAAGGTGCCAAGACAAACACCCTTCCAGTTCAAACCCCTTCCTCCT-------CAACTCCTCGACAAAACCTT
TTGTCCTAGTTCAAACCCCCT-ATAAACCAAAAATGTTCACCAGTGCTAATGTTTGGTGTTCTACTACTACACCATTCCC
AAGCTCCCAACTATCTAAGCACGGCGATGTGACCCCAAACAGAAATCTGAAGTGGGTGAATGGAATGATAAACATT----
---AATCATGTGCATTTCACTATAGGCTGCATCGTGCGTACATTTGAAACAAATCATGTGCATAATAACTAAGATTCTGA
GCATAACAAGAAGCACCCTGACCTCTCCATTCCAGGAACGGCGACGGAAGCGACCGTGCTACTCCTCGACCTCGACCACC
TTCTTGGGCTCTGCGCGACACCAAACAACCAAACCATATCAGCCAGTGAAACAAACCTAGACCATGGCCTGAAGGCAGAG
TTAGGATTTGGGCGGCGGTACCGTGGAGGTCCGCCGGGCGGTGGTCCTTGCCCCACCCGACGCCGCGGGTGGACTCGAGG
TACTGGTCGACGAGGTGGCGGCACTTCTGGTGGTGGTTGACGCCCTCGATCCGGTAGCACCAGCGGAGGCGGTCGCGGAT
GATCTTGGCGGTCTCAATCTGGATCCACTTCTCCCGCACCAGGTGCTCCCTGTACTCCAGCATCGCCACCGGGTCCCCGT
ACGGGTTCTTCGGGTCGAAGTCATCCGGCGGCCTCTCGTCGAACTCGACCTTCGCCTTCCGCACCATCTCCGATCGCCTG
CTCCTCCGCCGCCGCCGCCGGCCTCTCTCTCTCTCTCC-TCTCTTCTTGGCCTCTGGGGTGGATGGATCTCGTCGTGGGG
ATTGGGGAATGGGGGAGAGAGACGAACGGATGGC-------TTCCCACTT----ACAGAGCGCAGTAGCAGCCCGGCCCA
TTTATATGGCCCATTTACACGGCCCACTTGGCGCGGTCGTATAATTCGCTGTTGAGTCTGACCAGTGACCCACACACACG
GAAGGGCGCCGCGTTTCAAACGAGGCCGATCTCCGATGAGCTCTCCGGCGAGGTCGACCGTCTCGGCGGCGAGCGCGGGA
GGCGGGATCGCGATCTCCGCTGCCGACGACCTCGCCGACTCGATCGACGCGCTCTACCGCAAGGACGAGGCCATGGCCGG
TAAATCCATCCCCCTCGGCACCTCGCAAGCCCTAGTTCCCCTCCCTTCATGTCCTCCCCCTCTCAGTTAAGCAGTCGAAT
TGGTCTGTCTGGTT---CCCCCGCAGAGCTCAAGTCGGAGGTCATGGAGGCGCTACAAAAGGAGGTCAGGTCTCTCGACG
ACAACAGCTGGATGTTCGCCGCCCCGCGCTCCCGCATCAACCTCGTCTCCAGGCCAGGTAACAACACACAGTGACACCGT
AAATCTCATTGAAATACAGAATGAGCACACGAGTTTGAGGTTGATTATGGTTTATTGTTCCCAGCTAGGAATTGAGATTG
TG-TGTAACACGATCACGAGAGTTTATGTTTG------------------------ATTCCGGCTTGGTTTGTTCTTTTC
AGGTGGTTACCTGCCCAAGCAACAGGGGAAAATTGCGGAGCTGGATCAAGCGTCCAAGAAGACAAGGAACTGCTAGGGAT
TATAGGCTTTCCATCCAGGCTATGTTCCTAGGGGCTATCATCTGATTCCACTCACCTGTAGTT---------------CA
TTCTGCTAAATCATTTCCACGTACATGCTA---TATTTAAGTGACCCAAGTGTGATGCAGCTGCTCACAACTTGTGTAAA
TCATTTTCAGGTACATGCTATGATTTACATTTAAGTAATGCAAGTGTTATGATGATGTTCATGACTTGTGCCTTTTGCCA
CCAAATCCTTGCAAATTGATCCCCAAAAAAAATCTCAGATAAATCTTGAGATACAGTGTGTCG-ACTTTGTAGGTGAAAA
TGTAAAATATTGAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr1B_1
ACACAGTTAAGATGCCAAGACAAACACCCTTCCAGTTCAAACCCCTTCCGCCTTCCTCCTCAACTCTTGGACAAAACCTT
TTGTCCTAGTTCAAACCCCCTTATAAACCAAAAATGTTCACCAGTGCTAATGTTTGGTGTTC---TACTACTACATTCCC
AAGCTCTCAACTATCTAAGCATGGCGATGTGACCCCAAACAGAGATCTCAATT-GGTTAATGGAATGGTAAACATTTGAA
ACAAATCATGTGCATTTCACCATAAACTGCATCGAGCGTACATA------------------------------------
--ATAACAAGAAGCACCCTGACCTCTCCATTCCAGGAACGGCAGCGGAAGCAGA---GCTACTCCTCGACCTCAACCACC
TTCTTGGGCTCTGCGCAACACCAAACAACCAAACCATATCAGCCAGTGAAACAAACGGA-ACCATAGCCTGCAGGCAGAG
A-AGGATTCGGGCGGCGGTACCGTGCAGGTCCGCCGGGCGGTGGTCCTTGCCCCATCCGACGCCGCGGGTGGACTCGAGG
TACTGGTCGACGAGGTGGCGGCACTTCTGGTGGTGGTTGACGCCCTCGATCCGGTAGCACCAGCGGAGGCGGTCGCGGAT
GATCTTGGCGGTCTCGATCTGGATCCACTTCTCCCGCACCAGGTGCTCCCTGTACTCCAGCATCGCCACCGGGTCCCCGT
ACGGGTTCTTCGGGTCGAAGTCATCCGGCGGCCTCTCGTCGAACTCAACCTTCGCCTTCCGCACCATCTCCGATCGTCTG
A---TCCTCCGCCGCCGCCGGCCTCTCTCTCTCCTCCCTTCTCTTCTTGGCCTCTGGGGTGGATGGATCTCGTCGTGGGG
ATTGGGGAATGGGGGAGAGAGACGAGCGGATGGC-------TTCCCACTTACAGACAGAGTGCAGTAGCAGCCCGGCCCA
TTTATATGGCCCATTTACACGGCCCACTTGGCGGGTTCCTATAATTCGCTGTTGAGTCTGACCAGTGACCACCCCTACGG
AAAGGGCGCCGCGTTTCAAACGAGGCCGATCTCCGATGAGCTCTCCGGCGAGGTCGACCGTCTCGGCGGCGAGCGCGGGT
GGCGGGATCGCGATCTCCGCTGCCGACGACCTCGCCGACTCGATCGACGCGCTCTACCGCAAGGACGAGGCCATGGCCGG
TAAATCCATCCCCCTCGGCACCTCGCAAGCCCTAGTTCCCCTCCCTTCATGTCCTCCCCCTCTCAGTTAAGCAGTCGAAT
TGGTCTGTCTGGTT---CCCCCGCAGAGCTCAAGTCGGAGGTCATGGAGGCGCTGCAAAAGGAGGTCAGGTCGCTCGACG
ACAACAGCTGGATGTTCGCCGCCCCGCGCTCCCGCATCAACCTCGTCTCCAGGCCAGGTAGCAACAGACAGCAACACCAT
AAATCTCACTCAAATACAAAATGGGCATAAGAGTTTAAGGTTGACTATGGTTTATTGTACCCCGCTAGGAACTGAGATTG
TGGTGTAATACGATTACAAGAATGGGATACAAAATGCATAAGAATTTAAGGTTTGATTTCCGGTTTGGCATGTTCTTCTC
AGGTGGTTACCTGCCCAAGCAACAGGGGAAAATTGCGGAGCTGGATCAAGCGCTCAAGAAGACAAGGAACTGCTAGGCAT
TATAGGTTTTCCATCCAGGCTGTGCTCCTAGGGGCTATCA--------------CCTGATTTCAGTCACCTGTAGTTGCA
TTCTGCTAAATCATTTCCAAGTACATGCTAGGATATTTAGGTGACCCAAGTGTGATGATGCTGTTCATAACTTGTTTAAA
TCATTTTCAGGTAC--------ATTTACATTTAAGTAATCCAAGTGTTATGATGATGTTCATCACTTGTGCCTTCTGCTA
CCAAATCCTTGCAAACTGATCCAGTTTT---TTCTCAGATAAATCTTGAGATACAGTGTGTCG-ACTTTGTAGGTGAAAC
TGTCAAATATTGAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>SNPs
----------------------------------------------------S---------------------------
----S--------------------------------------------------------S---------S--------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
------------S-------------------------S----------------------S------------------
-----------------------SS-----S-------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
-------------------------------------------------------S------------------------
-----S-----------------S-------S--SSSSSSS---------------------------------------
-----------------------------------------------SS-S-----------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
----------S--S--------------S-------S---S---SS-SS-S------S--S---S---------------
-------S-----SSSS---------------------------------------------------------------
--------------------------------------------S-----------------------------------
---------------S----------------S----S-------------------------------------S-S--
-S---S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----------------------------S----------------------
-------------------------------------------------S--------------------------S---
---S--------------S---------------------------------------SSS-------------------
---------------------------S--------------S---------S---------SS--S---------S---
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1009
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GGCGGGGTCCTATAATTCCG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_2032
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AGGCGACTAGGGTTCCTCC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
