>input_sequence_76025
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-----------------------------------------------------------------------AAAGAAAGT
CATCCGAG-----AATCA--------------GAACCTCGTCCACCGGAGATGGAGAAGATGAGCTCGTCGGTGCAGTCC
TGGGCGGACCAGCACAAGCTCGCCACCGTCGGTCAGTCTCTGTCCCTCGGTCCCCCTTTCTCTCCCGCGATCTCCGATCG
GTGTTCTTGTATAGTTGTGAATTTGTGATGTGAGACCAGGTACTGATTTTGA--------TTGCCGTGAATGCAGGGGCG
ATGTGGACGATGGCGGTTGGCGCCTCGGTGGCGTGCGGCCGGCGGCGGGGCAGGGCGGCGGGGTTCACGGTCGCTGCCGC
GCTCGGCGGAGCGGCGCTGGCGCACCACTACTACGCCGCCAAACGGAGGGAGGAGGAGGCGAGGTGCTTCGAGCTGGACT
TCTACTCGCAGCTACCGGCGGCCACCGGCGAGGATGGCCAGGAGAACGAGCGGTGGAGCTACTAGCA---GATCAGACGT
TCAGATCACGGCCGGCCGGCCGGCCAGCCGTGGATCGAAACGAGACGATGATGATGACGACCAATTAGGAGTACCAGTTA
ATTAATAGCCCATGACGTG-------------------------------------------------------------
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>chr5D_1_TraesCS5D01G143900
TTCCTTCACCACCTCCTTCACGGGCTTCTCCTCCAAGACGTCGTCATTTGAAACCAACTCCTCCTTCGTGGCGGGCGGAG
CGGTGGATGAAGATGAACCCGACGATCGAGGGAGGCGTAACAGATTCGCTCGAAG-CCCCTCTTGGATTTGTAGTCCTGG
TGCAGTGGAGGCTGTTCCGTGCGATAGCCGCCGAGCAGCCAC-ATGCTCGAGTCTTCTTCGCCTTGGTCTTCTTGCCCAT
GGCAGCAGCCAATGGAGGTATTGTGTGTGACGACTCTTTGATAGGGGGAGTCGGATGATAGGTTTTGGGAAGACGCCGAC
CGGTTTTAAGATCCGAAGTGGGCTTCTCGGGCGGTGCGCCAACATCAGTGCT----------------------------
----------------GGGGATTCTAGAGCTGGAGAGGGATTCTGGATAGGACCAGCTTGTTAGAAGTTGGCAGACGTCT
GGGCTCCTCGAGAGCTCCCTGATTTTGGGCCGACGTAGAGGATTTCAAACATCCAGATCAGTCCAGT-CGATTTGCTGAG
CTGCGTTGAAGGCCTAAAAATGTTTTGAACCATTCATTTCAAACATTTGGGATAATTTGATGAGCTGCG-----GATGTC
ATATTGGGAGGAGTTCACAACGGTGTGATACAGG----------------------------------------------
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--GCACCCTTAGCAGTGAAAGCTTGTCCAACTTGTCTACAAAAA-------TTGTTTTTTCAAGAAAGAAAAGAAAAGAA
ACAGTTCGTTAAAGCTATCAC---GGAGCACTCCTGAGACAGACGGTGGTCCCGACACGCTAA-TTAAGTCCCACGTGTC
AGTGTGACGGCGAGCAACCTGGATAAGAAGGACCTCATAAAACCTCGGGCTACCTCCGAATAGAGAGGCAACCCAACGAA
GCAAACCGCGACAGAAACTGGTGGCTGGGCCACTGGTTTCATTTATCTTTTTTCCTTCTAGCTAACGATCGATAGAAGCC
AGTGGGCGCGCTGCGCAGCTACAAATACGCCACCAACCTGACCCGCTGATCCCATCCAATTCCCCATTCCCAAAGAAAGT
CATCCGAG-----AATCA--------------GAACCTCGTCCACCGGAGATGGAGAAGATGAGCTCGTCGGTGCAGTCC
TGGGCGGACCAGCACAAGCTCGCCACCGTCGGTCAGTCTCTGTCCCTCGGTCCCCCTTTCTCTCCCGCGATCTCCGATCG
GTGTTCTTGTATAGTTGTGAATTTGTGATGTGAGACCAGGTACTGATTTTGA--------TTGCCGTGAATGCAGGGGCG
ATGTGGACGATGGCGGTTGGCGCCTCGGTGGCGTGCGGCCGGCGGCGGGGCAGGGCGGCGGGGTTCACGGTCGCTGCCGC
GCTCGGCGGAGCGGCGCTGGCGCACCACTACTACGCCGCCAAACGGAGGGAGGAGGAGGCGAGGTGCTTCGAGCTGGACT
TCTACTCGCAGCTACCGGCGGCCACCGGCGAGGATGGCCAGGAGAACGAGCGGTGGAGCTACTAGCA---GATCAGACGT
TCAGATCACGGCCGGCCGGCCGGCCAGCCGTGGATCGAAACGAGACGATGATGATGACGACCAATTAGGAGTACCAGTTA
ATTAATAGCCCATGACGTGGCGCGGCTCATTTGTCCTAATCCATCCAGCGGGGAAGACGGGATTATCTTATCTACTTTGT
ACT----ATCCATCCGGCAAGTGGCGTTGTTGTCTCCATCATCTAGTAGGTGTGATGGGGGTGGGGTGGGGGTAGGATTG
G---------TTCCCTCTTCTCTATGTCTATGATTGAAGGAACCAAGAAACCCAACGATGCCTTGCGGATTATAGTAGAT
AGAATTCTGTCTGTTTGGATGAAGTTGATCGAATAAACAACAGCGAGTCGCCTGGGTTATCCAAGTTTTAAACTTTTAAT
AGCGTCCGGCACACAGTGAGAAGCGAGGCCGGCCT---------------------------------------------
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-----------------------------------------------------AGTCATGAGAAAAGAATCCTGGAATCC
GTGGTTGTTACAGTATCCATTCAAGGGGTCCTTATGTTAACTGGATCTGGAAGGAAGAATCTTTCCCGGAAGAAAGTGGA
GAAAAGAGAGAGAAGCTGGCATTTTAATTTCAGTTGCACACAACTGATAATCATGACAAATGCAATTGCAAGGTATGGTA
ATGTCTTTGAGAATCTTTGGAGTATTTTGCTGCAACATGCAACATAATAAAGCATACTATAATTTAAATTAGGTGTAAAG
TTATAGCTACAACGGCAACCAGCAAATTTCCTTCGGTATCCGTGTGCAAACAGGGGGGACTAGTCAGTGGGCACGGATGC
GGGAGGCAGCGATTCAACCGTATCCTGTATATGTCCGTCAGTAAATTTAAATTCAAATGTACGTCG----------CGCG
CCGGATCACACCCGCGCCGGAT--CGCATCCCCGATCACAACCAAAATGAGACAAATATGTTTAGTTTTTACATGCCCAA
ATCCAAAAGAACATCAGTTTGGCAGTCCGTGCATTTCCGCCCTGCCGGACCGGCAATTCCAGCAAGCTGCTCCTCGATCA
AGGAGGTGTCGTCGTCGCCGTGTAGGCAACCTCCGTGTCCGTGTCCGCCTTCGCTGCGTCCTCATCTTCCGCCGCCGTCA
ACTCATCTTTCTGCCGCTGCAA
>chr5A_9
--------CCACCTCCTTCACGGGCTTCTCCTTCAAGACGTCGTCATTTGAGAGCAACTCCTCCTTCGTGGCGGGCGAAG
CGGTGGATGAAGATGAACCCGATGATCGAGGGAGGTATCATGGATTCGCTCGAAGCCCCCCCTCAGATTTGTAGTCCTGG
TGTAGCGGAGGTTATTCCGAGCGGTAGCCGCCGAGCAGCCACCATGCTCGAGTGTTCTTTGCCTTGGTCTTCTTGCCCAT
TGCGGCGGCCGATGGAGGTATTGTGTGTGACAACTCTCAGATAGGGGGAGTCAGATGATAGGTTTTGGGAAGACGCCAAC
CGGTTTTAAGATCCGAAGTGGGCTTCTCGGGCGGCGCGCCAACATGAATGCGACTAGACGGCGAGACGGTGATAGCGGCT
TCAGTGATT--------GGGGTTCTAGAGCCGGAGAGGGTTTTCGGATAGGACTGAGTTGTTGGAAGTCGGCAGACGTAT
GAGCTCCTCAAGAGCTCCCCGATTTTGGGCCGACATAGAGGATTTCAAACATCTGAATCAGTCTGGTCCGATTTGGTGAG
CTGCATTGAAGGCCTAAAAATGTTTTGAACCGTTCATTTCAAACATTTAGGATAATTTGATGAGCTGCG-----GATGTC
ATATTGGGAAGAGTTCACAACGGTGTGATACAGG----------------------------------------------
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--GCACCCTTAGCAGTGAAAGCTTGTCCAACCTGTCTACAAAAA-------ATGTTTTTTCAGAAAAGAAAAGAAAAAAA
ATAGTTTGTTAAAGCTATCAC---G---CACTCGTGGGACAGACGGTGGTCCCGACGCGCTACTTTAAGTCCCACGTGTC
AGTGTGATGGCGAGCAACCTGGATAAGAAGGACCTCATAAAACCTCGGGCTACCTCCGAATAGAGAGGCAACCCAACGAA
GCAAACCGCGACAGAAACTGGTGGCTGGGCCACTGGTTTCATTTATCC-TTTTCCTTTTAGCTGACGATCGATAGAAGCC
AGTGGGCGCGCAGCGCAGCTACAAATACGCCACCAACCTGACCCGCTGATCCCATCCAATTCCCCATTCCCAAAAAAAGT
CATCCGGTCCGAGAATCACTGTAAGAGATTAGGAACCTCGTCCACCGGAGATGGAGAAGATGAGCTCGTCGGTGCAGTCC
TGGGCGGACCAGCACAAGCTCGCCACCGTCGGTTAGTCTCAGCCCCTCGGTCCCCCCTTCCCTCCCGCGATCTCTGATCG
GTGTTCTTGTACGTAG------TTGTGATGCGAGACCGGGCACTAATTTTGGCTGCGTCTTTGCCGTGGATGCAGGGGCG
ATGTGGACGACGGCGGTTGGCGCCTCGGTGGCGTGCGGCCGGCGGCGGGGCAAGGCGGCGGGGTTCACGGTCGCTGCCGC
ACTCGGCGGAGCGGCGCTGGCGCACCAGTACTACGCAGCCAAACGGAGGGAGGAGGAGGCGAGGTGCTTCGAGCTGGACT
TCTACTCGCAGCTGCCGGCGGCCACCGGCGAGGACGGCCAGGAGAACGAGCGGTGGAGCTACTAGCGGTGGATCAGACGC
TCAGATCACGGCCGGCCGGCCG--------TGGATCGAGACGAGACGATGATGATGACGACCAATTAGGAGTACCAGTTA
ATTAATGGCCCATGACGTGGCGCGGCTCATTTGTCCTAATCCATCCAGCGGGGAAGACGGGATTATCTTATCTGCTTTGT
ACTATCCATCCATCCAGCAAGTGGCGTTGTTGTCTCCATCATCTAGTAGGTGTGATGGAGGTGGGGGTAGG-----ATTA
TTAGGTTCCCTTCCCTCTTCTCTATGTCTATGATTGAAGGAACCAAGAAACCCAGCGATGCCTTGCGGATTATAGTAGAT
AGAATTCTGTCTGTTTGGATGATGTTGATCGAATAAGCAACAGCGAGTCGCCTGAGTTATCCAAGTTTTAAACTTTTAAT
AGTGTCCGGCACACAGTGAGAAGCGAGGCCGGCCT---------------------------------------------
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----------------------------------------------------TAGTCATGAGAAAAGAATCCTGGAATCC
GTGGTTGCTACATTATCCATTCAAGGGGTCCATATGTTAACTGGATCTGGAAGGAAGAATCTTTCCCGAAGGAAAGTGGA
GAAAAGAGAGAGAAGCTGGCATTTTAATTTCAGTTGCACACAACTGATACTCATGACAAATGCAATTGCAAGGTATGGTA
ATGTCTTTGAGAATCTTTGGAGTATTTTGCTGCAACATGCAACATAATAAAGC--------ATATAAATTAGGTGTAAAG
TTATGGCTACAACGGCAACCAGCAAATTTCCTCCGGCATCCGTGCGCGATCCACGCATG--------------CGGATGC
GGGAGGCATCCAACCAACCATATCATGTATATGTCCGTCAGTGAATTCAAATTCAAATGTACCCTGATCCACATAACA--
--------------CGTCGGAT--CGCATCTCCGATCACAACCAAAAAGAGGCAAATATGCTTAGTCTTTACATGCCCAA
GTCCAAAAGAACATTAGTCTGGCAGTCCATGCATTTCTGCCATGTTAGACCGATAATCCCAGCAAGCTGCTCCCCGATCA
AGAAGGTGTCGTCGCTGCTGTGTAGGCAACCTCCGCGTCCGCCTCCGCC-------------------------------
----------------------
>chr5B_9
--------CCACCTCCTTCACGGGCTTCTCCTCCAAGACGTCGTCATTTGAGACCAACTCCTCCTTCGTGGTAGGCGGAG
TGGTGGATGAAGAT-AACCCGGCGATCGAGGGAGGCGTCACGGATTCGCTCGGAG-CCCCCCTCGGATTTGTAGTCCTGG
TGGAGCGGAGGCTGTTCCGAGCGGTAGCCGCCGAGCAGCCACCATGCTTGAGTCTTCTTCGCCTCGGTCTTCTTGACCAT
TGCGGCGGCCGATGGAGGTATTGTGTGTGACG-CTCTCAGATA-GGGGAGTTGGATGATGGGTTTTGGGAAGACGCCGAC
CGGTTTTAAGATCCGAAGTGGGCTTCTCGAGCGGCGCGCCAACATAAATGCGAGTAGACGACGAGACGGTGATAGCGGCT
TCAGTGCTGGGGGGGGGGGGGTTCTAGAGCCGAGGAGGGTTTCCGGATAGGACCGAGTTGTTGGAAGTTGGCAGACATAT
GAGCTCCT-AAGAGCTCCCCGGTTTTGAGCCGACATAGAGGATTTCAAAC------ATTAGTCTGGTCTGATTTGGTGAG
CTGCGTTGAAGGCCTAAAAATGTTTTGGACAGTTCATTTCAAATATTTAGGACAATTTGATGAGCCGCGTTGAAGATGTC
ATATTGGGAAGAGGAGTTCACAACTGCTTCCTCTGTCCGGAAATACTTGTCATCAAAATGAATAAAAGAGAATGTATCTA
GATGTATTTTAGTTCTAGATACATCCTCTTTTGTCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTATGTGATTAG
GAGCACCCTTAGCAGTGAAAGGTTGTCCAACTTGTCTAAGAAATAACCAGTTTGTTTTTTCAGAAAAGAAAAAG-AATAA
CCAGTTTGTTAAAGCTATCACTGGG---CACCCGTGATACAGACGGTGGTCCCGACACGCTAC-TTAAGTCCCACGTGTC
AGTGTGATGGCGAGCAACCTGGATAAGAAGGACCTGATAAAACCTCGGGCTACCTCCGAATAGAGAGGCAACCCAACGAA
GCAAACCGCGACAGAAACTGGTGGCTGGGCCACTGGTTTCATTTATCT-TTTTCCTTCTAGCTGACGATCGATAGAAGCC
AGTGGGCGCGCTGCGCAGCTACAAATACGCCACCAACCTGACGCGCTGATCCCATCCAATTCCCCATTCCCAAAGAAAGT
CATCCAAC-----AATCACTGCAAGAGATTAGGAACCTCGTCGACCGGAGATGGAGAAGATGAGCTCGTCGGTGCAGTCC
TGGGTGGACCAGCACAAGCTCGCCACCGTCGGTCAGTCTCGGTCCTTCGGTCCCCCCTTCCCTCCCGTGATCTACGATCG
GTCTTCTTGTACGTAG------TTGTGATGTGAGACGAGGTACTGATTTTGA--------TCGTCGTGGATGCAGGGGCG
ATGTGGACGACGGCGGTTGGCGCCTCGGTGGCGTGCGGCCGGCGGCGGGGCAAGGCGGCGGGGTTCACGGTCGCTGCCGC
GCTCGGCGGAGCGGCGCTGGCGCACCACTACTACGCCGCGAAACGGAGGGAGGAGGAGGCGAGGTGCTTCGAGCTGGACT
TCTACTCGCAGCTGCCGGCGGCCACCGGCGAAGACGGCCAGGAGAACGAGCGGTGGACCTACTAGCA---GATCAGACGT
TCAGATCACGGCCGGCCGGCCG----GCCGTGGATCGAAACGAGACGATGATGATGACGACCAATTAGGAGTACCAGTTA
ATTAATAGCCCATGACGTGGCGCGGCTCATTTG-CCTAATCCATCCAGCGGGGAAGACGGGATTATCTTATCTGCTTTGT
ACT----ATCCATCCAGCAAGTGGCGTTGTTGTCTCCATCATCTAGTAGGTGTGATGGGGGTGGGGGTAGT-----ATTA
G---------TTCCCTCTTCTCTATGTCTATGATTGAAGGAACCAAGAAACCCAGCGATGCATTGCAGATTATAGTAGAT
AGAATTCTGTCTGTTTGGATGAAGTTGATCGAATAAACAACAGCAAGTCGCCTGAGTTATCCAAGTTTTAAACTTTTAAT
AGTGTCCGGCACACAGTGAGAAGCGAGGCCGGCCTAGTGAGTATCTGGTGATACCGCGGCTCAGGTGCTACCGTGATACG
AGCTCCTGGGCCGTCGGATCCCAGATCCAATGGCAAACAGGGAGCTGCTGTAGCTGCTGTATTTGTGCGCATTTTTCAGA
TTTTACGAGGGCTTTTTTGCAAAAATGTCATCATTTCACAGGAGCTCTTGGATCTAAGATCCAATGGCCGAGCTCGCACG
GGAGCACCTAAGCTTAGGTGCTCCCGGAGCACCTGATATTTTCCCGCCGGCCTAGTCATGAGAAAAGAATCCTGGAATCC
GTGGTTGTTACATTATCCATTCAAGGGATCCATATGTTAATTGGATCTGGAAGGAAGAATCTTTCTCGAAAGAAAGTGGA
GAAAAGAGAGAGAGGCTGGCATTTTAATTTCAGTTGCACACAACTGATACTCACGACAAATGCAATTGCAAGGTATGGTA
ATGTCTTTGAGAGTCTTTAGAGTATTTTGCTGCAACGTGCAACATAATAAAGC--------ATATAAATTAGGTGTAAAG
TTATGGCTACAGCAGCAACCAGCAAATTTCCTCTCGTATTCGTTCGCGGACAGGGGACCAGTCCACTGATATA--GATGC
GGGAGGCAGCCATCCACCCGTATCCTGTATATGTTAGCCAGTAAATTCAAATTCAAATATGCGTTGATCCACACAACGCG
TTGGATCACACCCGCGCCGGATCGCGCATTCCTGATCACAACCAAAAAGAGGCAAATATG-TTAGTCTTTACATGCCCAA
ATCCAAAAGAACA-------------------------------------------------------------------
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>SNPs
SSSSSSSS-------------------------------------------S----------------------------
--------------------------------------S--S------------------S--S----------------
--S--S-------------S---S--------------------------------------------------------
S--S--S---S--------------------------SS-----------------------------------------
----------------------------------S----------S-S---S----------------------------
--------------------S---------S--------S---S----------SSS-----S---------------S-
-S-------S---------S--------------S------------------SSS-------SS----------S----
-------------------------------S----------------S-------------------------------
---------S----------------------------------------------------------------------
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--------------------------------------------------------------SS-------------S--
------S------------------SSS-----S----------------------------S-----------------
-------S------------------------------------------------------------------------
------------------------------------------------S--------------S----------------
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-------S------------------------------------------------------------------------
----------------------------------------S---------------S---S-------------------
-----------SSSSSSSSSSS----------------------------------------------S-----------
----------S-----------------------------------------S---------------------------
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-------------S--------------------S---------------------------------------------
----------------------SSSS------------------------------------------------------
-------------------------------------------------------------------------S------
---------------S--------------------------------------------------SSS--SSSSS---S
------------------------------------------------------S-------------------------
------------------------------------------------------S-------------------------
--S-----------------------------------------------------------------------------
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------------S------------------S------------------------------------S-----------
-------------------------------------------------S------------------------------
-----------------------------------------------------SSSSSSSS--S----------------
----S---------------------------S-----------S--S--------SSSSSSSSSSSSSSSS--------
----------S--S---------------------------------S----------------S---------------
SS---------------------------------------------S---S--------S-----S-------------
--------------S---S---------S--------S---S--SSS-----SS---S---------------S------
--S-----------SS--S----------------S-----SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_482
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--------------------------------------------------------------AGAAGTTGGCAGACGTCT
GG------------------------------------------------------------------------------
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>reverse_2700
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-----------------------------------------------------------CTAGTCAGTGGGCACGGATG-
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