>input_sequence_76018
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-------------------------------------------------------------------------------A
TGGAGCAGGCCGGCCAAGGAGCGCAGCCCGCGAAGAAGCCGGCCGCGGAGGTGACGCTCCGGCGGTTCGGCCTCGACGAC
GTGGACGCCATGATGGTGTGGGCGTCGGACCCGCAGGTGGCCGCCGTGTGCCGCTGGGAGCCCTACGAATCCACGGAGAA
CCTGCTCGCCTACATCCGGGACGCCGTGCTCCCGCACCAGTGGCAGCGCGCCATCTGCCTCCCCGGT---GACGACCGCC
CCGTTGGCGCGATCTCCGTGTCGCCGACGGACGACGCCTGCCGCGCGGAGCTCGGGTACGTGCTGGCGCGCGCGCACTGG
GGCAAGGGCGTGGCCACGGCGGCCGTGCGGCGGGCGGTGGCCGCGGTGTTCGGCGAGGTGGAGGGGCTGC-AGCGCGTGG
AGGCGCTGGTGGACGTGGCCAACGTGGCGTCGCAGCGGGTGCTGGAGAAGGCCGGGTTCCGGCGGGAGGCCGTGCTGCGG
CGGTACTGCGTGCTCAAGGGCGCCGTCAAGGACATGGTCATCTTCAGCTTCATCTCCACCGACACTGTGCTGGTCGAATG
A-------------------------------------------------------------------------------
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---------------
>chr5B_1_TraesCS5B01G436800
GTAGGACATATCGGGGCGGCGTCCATCTTTGATGGATGCATGGATGACGATGCCGTGGGTTGGGGCCGGCGGTGGCAACT
CTCTAGGTTGGGGATCGCACCCGAGTTGGTAAGGGGGCAGTGTGGATGAGGCAGAAGAGAGAAAGAGGAAGAGGGGAACT
CAATCTAGGTGATGACGATTTGAAGAGATTGTGGATGGGTCCGTCCTGTCGTATCCAACGTGGCAAACGCGTCCGGACAC
GTCCAAGCGTTTCATATCCCTACCACGTATAGGCCGGCTCTAAGGGATGCCGGACAACCGTAAGGCCCAACATGGCCCAG
ACCGTGGACCAACATGTGGTTGGATGGTTAGAGGGATTGTGATATTCCCATCCCACCAGGGTTTAAATCCTGATGCTCGC
ATTTATTTCTGGATTTATTCAGGATTTTCGGCGATGCGAATTCAGTGGGAGGAGATGTTCCCGTCGACGACGAGGTGCCT
ACGATGACTTCGTAAATTTCAAGATGATATGCCGGCTTAGTCTTTCGGAGGTGCTCACAGGGGTAGAGTGTGCGTGTGTG
TGTTCATAGGGGTGAGTATATGCGCGTGTATATTAGCGCTTGCGTATGTAGTGTGTTAAAAAAACATGGCCCGGACCTAT
ATAAAAGAAAAGTGTCGATTTCTTTCCCCATATAAAACAAAT--------------------------------------
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------------------------------------------------------------------TGAAGTCATGGTCA
GGCTGACCATTGACTCCACT-----GTAGGGTGTAGCCGCCCTTCTTCCTCGGTCCGCCCCACCTTCCTTTGCCGTCCCC
ATCACCATTGACACTTGCGGACT----TGCCTGCCTGTCCTTTTCTCTGAATTTTCCAAGAACGCCCGATCGTTTCAC-T
TCACGGCAAACTTGGTCGTCAAGGTTCCTTCCTAAC-----TCACAATTTGTATGTGATGCGGTCAAACAGAGCGGGCGC
TTGCTCTGACAGATTCTAGCTTTAAACACAGGCCACCTCTGCTCGCCGTCGCCAAACAGAGTACGTAGCTCAAAAGAAAA
TGGAGCAGGCCGGCCAAGGAGCGCAGCCCGCGAAGAAGCCGGCCGCGGAGGTGACGCTCCGGCGGTTCGGCCTCGACGAC
GTGGACGCCATGATGGTGTGGGCGTCGGACCCGCAGGTGGCCGCCGTGTGCCGCTGGGAGCCCTACGAATCCACGGAGAA
CCTGCTCGCCTACATCCGGGACGCCGTGCTCCCGCACCAGTGGCAGCGCGCCATCTGCCTCCCCGGT---GACGACCGCC
CCGTTGGCGCGATCTCCGTGTCGCCGACGGACGACGCCTGCCGCGCGGAGCTCGGGTACGTGCTGGCGCGCGCGCACTGG
GGCAAGGGCGTGGCCACGGCGGCCGTGCGGCGGGCGGTGGCCGCGGTGTTCGGCGAGGTGGAGGGGCTGC-AGCGCGTGG
AGGCGCTGGTGGACGTGGCCAACGTGGCGTCGCAGCGGGTGCTGGAGAAGGCCGGGTTCCGGCGGGAGGCCGTGCTGCGG
CGGTACTGCGTGCTCAAGGGCGCCGTCAAGGACATGGTCATCTTCAGCTTCATCTCCACCGACACTGTGCTGGTCGAATG
ATTGGTGTGATAATTCAGCTTAATGTATATCCAGGCGAAAAGAAAATTTCATAATGTCATGC---GAAACTTTGCTTTCT
TTATTAATTGTTCAGTCAAGTAGTACTCCCTCCGTTTACAAAGGCAACATGTTCTGTTTTTTCCTTTTTATATTAGATGT
TCTGTTTACAAAGGTATGGGTATGAGTAGCCGAAGACAAATAAGTTAAGAATTTGGTAAAAGTTGGTTTCATTTGATTTG
ATTGAATTAATACATGATGTGGTTTTGGAAAGTCCCGATTTTGTTTTGATTATTTTAAGTTACTCTATCAAAGTTGGTTT
TAGTTTTGTGCAACATTTGTTGGGATTACCAGGAAACCCAAAGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTAACTTGTTGCAACAAATAGTTGAAGGCAATGTAAAAAAAAACAGACCGGTTATGGGA
ATCTTCTAGAAGGTTGCTAACCGCTTCAGGTCCAGTTTTTTTTTCTTTTCCCTGTTGTTTCTTTTACATTATTTCTATTT
TT-----------------------------TAAATAAAATGGTTGAAGATCTT-ATAAATTGTTTGTATTTTTCAAAAG
TTT-------------------TCCAGCAATTTCAGAAAATGTTCATGTTTTCAAATATTGTTTGAAATTTAACAAAGTG
TTTCCGTTTTCAGACTTATTTATTTTGCAAAATCAGAAAGAAAAAAAGTTC--ATGTTTTAACAGAAATGTTTCGGATTT
CAAAAACAATTCCCT
>chr5D_643
AAAAGAAAGTGCCAATT---------------------------------------------------------------
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----------------------TTTTCCCATATAAAACAAATTGAAGTCATGGTCAGGAGCTCACTGATGAGGTTCTCGA
AGCAGTATAGATGAGGAAAGTACCAGCAAGGTGGAATCACACAAATAGTGTGTTAATACCAAAGGTAGATAGCCCAGAGG
TAATAACACAGTTCAGGCCAATCAGTTTATGCAATGTGGTATATAAAATCATCTCTAAAATGCATGCGAACAGGTTAAAG
AAAGTTCTTCCCGAGATCATATCCCCCACACAGAGTGTGTTTGTGCCTGGTAGACTCATAACAGATAATGTGCTTATTGC
GTATGAATGCTTTCATGCAATAAAGAAAAAAACTCATGGCTCTAATGGGTATTGTGCAGTCAAGTTAGACATGATGAAAG
CATATGATCGTGTGGAGTGGGGTTTCTTGGAGCAAATGATGTTAAAACTCGGCTTTGATCCGGGTTGGATTGAGATGATA
ATGGAGTGTGTTTCCTCATAAGCTATAAGATAAGGTTTAATGGTGCAGAAACGGATGAGATAATACCTACTAGAGGATTA
AGGCAAGGCGACCCCTTGTCCCCTTATTTATTTCTGCTTTGTTCTGAAGGATTATCGAGCATGTTGGCCCATGAGGAAGA
GGTGGGTGGCTTGGAAGGTATCAAAGTCTGTCGTAATGCACCATCCATCTCCCACTTGCTTTTCGCAGATGATTCTCTCA
TTCTTATGAAGGCCAATACACAGAATGCAAATGCTTTGAGGAGGGTTTTAGATCTATATTGTGCAAGCTCTGGACAGCTT
GTCAGTACGGCAAAATCAAGTGTTTTTTCAGCCCCAATACAAATGTTGCCGTCAGGGAAGATGTATGCAGGACCCTTGAC
ATTTTAACAGAAACACTATCTGACAAATACCTTGGTCTTCCTACAATTGTAGGTGTGGACAGAAGTGATTGTTTTCAGCA
CTTGATTGACCGAATTTGTCAGAGAATTAAAGGATGGAAGGAGAAAATACTTTCTACACAAGGAAAGGAAATTTTGTTGA
AAGCAGCGGCCCAATCAATCCCCTCATATGCTATGTCAGTTTTTAAATTTCCAAAAGGAATTTGTAAGGCAATAACAGAT
GAAATGGCAGCGTTTTGGTGGGGAGATAGTGAGGAGAAGAAACGGATGCATTGGTTTGCATGGTGGAAATTGTGCATGCC
AAAGAGGAAAGGAGGACTGGGGTTTAGAGACCTTCACAGTTTTAATCTTGCTTTATTAGCAAAACAGTGTTGGCGTCTGA
TCCAGAATCCAGAATCTTTGTGTGCTCGAGTTCGCAGTGCTAAATACTATCCAGATGGAAACATATTGAATGCAGGGCCG
AAGAAGGGATCCTCCTTTACGTGGCAGAGTATCGTTGCTGGGATTCAAACGTTCACACGAGGATGTATTTGAAGAGTGGG
TACGGGATCACATATAAACATTTGGCAAGATCCTTGGGTTCCAACAAGTGAGTCCCGGAAAATCATAACACCGCGGGGAT
CCACTATGTTGACAACAGTGGAAGAGTTAATTGATCCACATACAGGTCAGTGGGATGAGGTGTTGGTTCGCGATGTCTTT
TGGCCGGTCGATGTGTACAGAATCCTACAAATCCCACTAAGAGTGCATATCATGGATGACTTTGTTTCATGGCATTATAA
CCGGAATGGAAACTTCACAGTTAGATCGGCTTATCACACAGAATTTAAACATCAATTTGGGCATCAGATGGATCTGTCTT
ATCCACAACGGAGCCGAGAACAGGATATATGAAAGCATGTTTGGGCTCTTCGAGTACCTGGGAAGATCAAGCACTTTGTG
TGGAAAGTTATCCGAGGAGTGCTACCATGTTTTGGAACCCTTGCAGGGCGTCATATACCAGTATCCGGGCAGTGTCCGGT
CTGCCGGATTGGTTATGAAGACACGCAACATTGTTTATTCCAATGTCCTTGAGCCTTGGAGATCTGGGAGAAACTCGGCT
TAAAACTGAGATTCAAAACGCAGCTCTACAGGACAGTCGGGTTCATTCACGATGAGCACTCTAATGTATAAAGATGAAAG
CACAGAGGGCGTACCGATGGCAGAGCTAATGACAGTGGCTAGCTGGTACATATGGTGGCAGAGGAGACAGAAAGTAAAGG
AGATACACATCCCACCACCGGATCGGACAACTGTTTCAATCCGAGTCCTGGCCACGAACTTTTACCATTCACTCGCAGTG
AATCAGCCCATAAGAAAGCGTGATCACATGTGGCAGAAACCGGGAAGGGGAGTAGTGAAGATAAACGTGGATGCGTCCTT
TTGTTATGAGAATATGAATGGAGGAACGGGGGCTATTGCGCGGGATGAGCGCTGTGAGTTCATTGCTGCAGCTAGCTGGT
TTATACCGCATGTGACAACAGCAGAATCTGCGGAGATAATGGCCATCCGTAATGGCTTCTATCTTGCCTCTAAGATCGGT
TGCAATACTTTCCAGATAGAACCTGATTGCTATAATGCGGTCCAAGCGTTTAGTATGGAAGAATACTCGGGACAAGATTC
AGCTACTGTATTTGAAGAAAAAGAGTTGGGATTAGATGTTGCTCATTATGAAATCATTGCTTGCCTACGGGAAGCAAATG
AAGTAGCTGATTGTATAGCTAAATACTCCCTCTCTAGTAGACTCTCGGAGTTTTGGGATAGCTCAATCCCGGACTTTATT
TCTCAACTTGTTGTAAACGACCTCACTATCATTTGAGAAATAAAGTTATTTACGTCAAAAAAAAAATGAAGTCATGGTCA
GGCTGACCATTGACTCCACAATTGAGTAGGGTGTAGCCGCCCTTCTTCCTCGGTTCCATCGACCTTCCTTTGCCGTCCCC
ATCACCATTGACACTTGCGGACTTGCCTGCCTGCCTGTCCTTTTCTCTGAATTTTCCAAGAACGGCCCATCGTTTCAC-T
TCACGGCAAACTTGGTCATCAAGGTTCCTTCCTTAC-----TCACAATTTGTATACGATGCGGTCAAACAGAGCGGGCGC
TTGCTCTGACAGATTCTACCTATAAACACAGGCCACCTCTGCTCGCCGTCGCCAACCAGAGCACGCAGCTCAAAAGAAAA
TGGAGCAGGCCGGTCAAGGAGCGCAGCCAACCAAGAAGCCGGCCGCGGAGGTGACGCTCCGGCTGTTCGGCCTGGCCGAC
GTGGACGCCATGATGGCGTGGGCGTCGGACCCGCAGGTGGCCGCCCCCTGCCGCTGGGAGCCCTACGAGTCCACGGAGCC
CCTGCTCGCCTTCATCCACGACGCCGTGCTCCCGCACCCCTGGTTCCGCGCCATCTGCCTCGCCGGCGACGACGACCGCC
CCGTCGGCGCGATCTCCGTGTCGCCGACGGACGACGCCTGCCGCGCGGAGCTCGGGTACGTGCTGGCGCGCGCGCACTGG
GGCAAGGGCGTGGCCACGGCGGCCGTGCGGCGGGCGGTGGCCGCGGTGTTCGGCGAGGTGGAGGGGCTGC-AGCGCGTGG
AGGCGCTGGTGGACGTGGCCAACGTGGCGTCGCAGCGGGTGCTGGAGAAGGCCGGCTTCCGGCGGGAGGCCGTGCTGCGG
CGGTACTGCGTGCTCAAGGGCGCCGTCAAGGACATGGTCATCTTCAGCTTCATCTCCACCGACACTGTGCTGGTGGACTG
ATTGGTGTGATAACTCAGCTTGATGTATATCCACGCCAAAAGAAAATTTCATAATGTCATAGTATGAAACTTTGCTTTCT
TTATTAATTGTTCAGTCAAGTAGTCCTCCATCCGTTCACAAAGGCAACACGTTCTATTTTTT------------------
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>chr5A_682
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------------------------------------------------------------------TGAAGTCATGGTCA
GGCTGACCATTGACTCCACT-----GTAGGCTGTAGCCGCCCTTCTTCCTCGGTTCCATCGACCTTCCTTGGCCGTCCCT
ATCACCATTGACGCTTGCATA----CCTGCCTGCCTGTCCTTTTCTCTGAATTTTCCAATCACACTCCATCGTTTCACTT
TCACGGCAAACTTGGTCGTCAAGGTTCCTTCCTACAGTAAGTCACAATTTGTATGTGATGTGGTCAAACAGAGTGGGCGC
TTGCTCTGACAGATTCCAGCTATAAACACAGGCCACCTCTGCTCGCCGTCGCCAACCAGAGCACGTAGCCCAAAAGAAAA
TGCAGCAGGCCGGCCAAGGAGCGCAGCCCGCCAAGAAGCCGGCCATGGAGGTGACGCTCCGGCGGTTCAGCCTCGACGAC
GTGGACGCCATGATGGCGTGGGCGTCGGACCCGCAGGTGGCCGCCCCCTGCCGCTGGGAGCCGTACGAGTCCACGGAGCC
CCTGCTCGCCTTCATCCGCGACGCCGTGCTCCCGCACCCCTGGTTCCGCGCCATCTGCCTCGCCGGCGACGGCGACCGCC
CCGTCGGCGCGATCTCCGTGTCGCCGACGGACGACGCGTGCCGCGCGGAGCTCGGGTACGTGCTGGCGCGCGCGCACTGG
GGGAAAGGGGTGGCCACGGCGGCCGTGCGGCGGGCGGTGGCCGCGGTGTTCGGCGAGGTGGAGGGGCTGC-AGCGCGTGG
AGGCGCTGGTGGACGTGGCCAACGTGGCGTCGCAGCGGGTGCTGGAGAAGGCCGGGTTCCGGCGGGAGGCCGTGCTGCGG
CGGTACTGCCTGCTCAAGGGCGCCGTCAAGGACATGCTCATCTTCAGCTTCATCTCCACCGACACTGTGCTGCTCGACTG
ATTGGTGTCATAATTCAGCTTCATGTATACCCACCCGAAAAGAAATTTTCGTAATGTCATG---TGAAACTTTGCTTTCT
TTATTAATTGTTCAGTCAAGTT----------------------------------------------------------
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----------------------------------------------------------AATAAACAGACTGGTTAT-GGA
ATCTTCTAGAAGGTTGCTAACCGCTTCAGGTCCA--------TTTTTTTTCCAGTTGTTTCTTTTACATTATTTCTATTT
TATTTTAAATTTTCAAAAGGATGATTTTTTCTAAATAAAATGTTCGAAAATCTTCATAAATTGTTTGTAATTTCAAAAAA
TGCTCATGTTTTCAAAAAAATGTCCATGAATTTCAAAAAATGTTCATGTTTTCAAATATTGTTTGAAATTTAACAAAGTG
TTTCCGTTTTGAGATTTCACAG------AAAATCAGAGGTAAAAAAAGAGTTTATGTTTCAACAGAAACGTTTCGGATTT
CAAAAACAAATCCCT
>chr4A_1046
GCGAGAT-------------------------------------------------------------------------
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--------------------------------------------------GTGACCCTTCGGCCTCTCGACCTCGCCGAC
GCCGACGCCATGATGGCGTGGGTGTCGGATCCCGAGGTCACGACCTTCATGACGTGGGACCCCTACATGTCCCGCGACGC
CCTGCTCGCGTTCCTCCGGGACGCCGCGCTGCCGCACCCCTGGTTCGGCGCCGTATGCCTCCCCGGT---GGCGACCGCC
CCGTCAGCTCGGTGTCCATGTCGCCGACGGCGGACGCGTGCCGCGCCGAGCTCGGGTACGTGGTGGCGCGCGCGCACTGG
GGCAAGGGCGTGGCCACGGCCGCTGTGAAGCGAGCGGTCGCCACCGTGTTCAAGGAGGTGGAGGGGCTGGGAGCGCGTGG
AGGGGCTAGTGGACGTGCGCAACATCGCGTCGCAGCGCGTGCTGGAGAAGGCCGGGTTCCGGCGGGAGGCCGTGCTGCGG
AGGTACTGCGTGGTCAAGGGCGCCGTTAGGGACATGGCCATCTACAACTTCATCTCCACGGACACACTGCTCGT------
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>SNPs
-S-S--S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---S------------------------------------------------------
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------------------------------------------------------S-SSS-S-------------------
-------------------------------------------------------------------S------------
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---------------------S---------------------------------S-----S------------------
-------------------------------S------------------------------------------------
----------------S----------------------------S-S--------------------S---------SS
-----------S--------------------------SS---SSS----------------------------------
----S---------------------------------------------------------------------------
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-----------------------------------------------------------------------------S--
---------------------S-----------S---------------------------S------------------
------------------------S----S------S------------S-----S------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------S------S---
----------------------------------SSSSSSSS--S----S--S---------------------------
-S----------------------------------------S-S---S--------------------S---SS----S
-SS-----------------------SS-------S--------------------------------------------
----------S---S--SSSSSSSSSSS---------SSS--------SSS--------S--------S-----------
---------S-----
>forward_615
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-----------------------------------GCGCTTGCGTATGTAGTGTG-------------------------
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>reverse_4578
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-----------------TGTGGTTTTGGAAAGTCCCGA------------------------------------------
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---------------
