>input_sequence_76011
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TGGAGGTCGTGCCCGACAATGCCGCCGGCGTTGCGGCGGCCGAGCAGTACCGTGGGGTGAGGAAGAGGAAGTGGGGTAAG
TGGGTGTCCGAGATCAGGGAGCCCGGCAAGAAGACGCGCATCTGGCTTGGCAGCTTCGAGTCCCCGGAGATGGCCGCCGT
GGCGCACGACGTGGCCGCGCTCCGGCTACGGGGGCACGAGGCCAGACTCAACTTCCCGGGCCTCGCCCACCTCTTCCGCC
GGCCGGACACTGCCGAGCCTGACGACGTCCGTGCGGCTGCGCTGGAGGCCGCGGCCCAGGTCCGGTTCAGGCCCGACCTC
GTGCTACAGCCGGGCGGCTGTGGCAGCAGCGGCGGCGGCGGCTTCCCGGACCGGCTCGATGACGTGGCGTGGAATGCCCT
GCTTCGCTCTGATGATCTGGAGCCCGAGTCGCCCAACATGTGGGCGGAGCTGGCGGAGGCCATGCTGTTGGCCCCACCTG
TCTGGGAGGGCAGCGCGGTGGACAATGACGAGTGGTCCCAAGGCTCGCTCTGGGACCCATCTTGCTGGAGCTACTGA---
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>chr4D_1_TraesCS4D01G087000
CGCGGCCGGCCATAGACTAGTCAAGGGTATCCATGTCGTGAGAATGGATATGTGCCGACGCCGAGCATAGACTAGTTTTA
CCTTAGTCCAGTATAGCTTTTAGTTAAAAAGTCTCCAGAATGTAACGAATGTCGTCTGGTTTGGGTTTGTATGAAATCCT
TTGTGTTTGCATGAA-TTTGTCCGGTTAGTTCAAAAAGTTGTTGAAATGTATGTGGATAGTGTTGGATGGCGGCCTCCGG
CATGAGTGTCTGCGGACTGGCCCACCCTGTCCGCGGACGGATGCGGGTGGAAATTTGCAGGTTGGCGTTGGAGATGCCCT
TAGCTTCTACCCACAATATTTGCTTTCATAAAAGTTGAAACTAGCCACTTTGTAGTTCCATATATCCTTTTCCATATAT-
--------------------CAAAATTCGTGGTTGAGCTATTGGCATGCACACAACATTGATGTTGTAATAGTACATATG
AAGATAAAAGAAGTCACAAAGCCAAGCCATTGAAGCGTGATAATAAGCACATGCATAGTGCATCACATCATAACTAACTC
CAAAACCATTGCACTGTCCAGGAAGCTCCCTCCCACAAAGCAAACCAACATCTCCTAATCCTGCTGCCGGTGGATAATGC
ATCATCGCGGTTTCTCTCTCTTTTTATATCCCAACACACCCGTATGGCCATTTATATTTTTTACAAAGAAAAACAGGGAA
GCGACACGTATCAGCCTCCAGCTGTCTCCACCCAGCTCAAACACCACCCCCCG-----------CCCCATGCATGCACCC
ATGCACTTCAAGTTTTCAACACACCT-TTCTTCTCTCTCATCTTCACTCCCGCACACCTCACCATCTCTGCATCTCTCTT
TCTAGTCGATCTCTGCCCTTTCTA-----TCCCTATATATACCCACACGCACGCCTCCAATCCAACACCAACTTAGAGCT
TACACTGCGACACTCCTGCAGCAAAGAACTTCTTGTACTTACACAGGCGCATCACATAGCTTCGATCGTCATTGCTGCGA
TGGAGGTCGTGCCCGACAATGCCGCCGGCGTTGCGGCGGCCGAGCAGTACCGTGGGGTGAGGAAGAGGAAGTGGGGTAAG
TGGGTGTCCGAGATCAGGGAGCCCGGCAAGAAGACGCGCATCTGGCTTGGCAGCTTCGAGTCCCCGGAGATGGCCGCCGT
GGCGCACGACGTGGCCGCGCTCCGGCTACGGGGGCACGAGGCCAGACTCAACTTCCCGGGCCTCGCCCACCTCTTCCGCC
GGCCGGACACTGCCGAGCCTGACGACGTCCGTGCGGCTGCGCTGGAGGCCGCGGCCCAGGTCCGGTTCAGGCCCGACCTC
GTGCTACAGCCGGGCGGCTGTGGCAGCAGCGGCGGCGGCGGCTTCCCGGACCGGCTCGATGACGTGGCGTGGAATGCCCT
GCTTCGCTCTGATGATCTGGAGCCCGAGTCGCCCAACATGTGGGCGGAGCTGGCGGAGGCCATGCTGTTGGCCCCACCTG
TCTGGGAGGGCAGCGCGGTGGACAATGACGAGTGGTCCCAAGGCTCGCTCTGGGACCCATCTTGCTGGAGCTACTGATCG
CACAACTTTTGGTTCGTAGAGGTCGAAATTAATCAAAATTTTCCAAAAGACAACGGAAAATTTAGGGATTCCATCAAGCT
TAATTTCCGAACAAATTTAAGTATCGGTAGCTTAAG-GGATTCTTATGATATTTTGTCAGTATTGTGAGTGTGGCATTTC
TTTGTACTACAGAACGTGCGCGTGGAATTCAGTTGGACACAATAATTAAGTTCCACTGAGAATCGAACCTCCTTTCTAGT
TACTGGTTCAATCAAATAAATTTGAATTCCAATATACATCTAGCGTTCCCTCGGGAAGGTAACCCGAGAGAACAATCATT
CCCCAAATAGAGAGGATCGAACGAACGCAAAA--------AAAAAAATCATTCCCACCGAACCCTCCAGAATTGTTATGC
GGAAATAGATAAAATAATTGTGTTTGTTGTAAAGGATTTGCCTAATGTAAAATTTGACATGTTGTATACAAAGATTGTCA
GAAAATCGTCATGCCAGAACAGAGCTTTTCCGTGGG-TTTGGGGAAACCGTCATGATTGAAGCATGGAGATTTGCCAGCC
C-AAAAAAAGAAATGATGAAAATTGCCATGATCAAAATTTGTCGTCTTGCTACATCAAGGAAAG-AAATGTGAGAATTGG
CATGTTGTACAAAGATAAATTGGTATTCCCGAATGTGTTCGCTC---------------------TCAAATACTGCCGTT
ACCACGTTGTTTGCCTAGAGGGTGCACGGGATCTGGCGGCGCATAGGGTATTTGTGCGGAAAACCTATAAAACTAACGTC
AGTTGTAT-AGCATTTGAGATAAATTTTGCTGCCATGAGAATTTGTAGGATTAACTCAAAATCAAACCTCGTTTCCGTTG
TTTCAGAATCATTTGAATTAAGATAGTATTTCCATGGAACTTTGTGACGCGGGAGGAAATTTCCGTAGAATGACGATGCC
AGATATACTACCGCGACAAGATGGAACGCGTTATCCCACTGTTTCGTCCTCGCCCGTACCACCTTGACGAA
>chr4B_1
CGCGGCTAGCCATAGACTAGTCAAGGGTATCCATGTCGTGACAATGGATATGTGCCGGCGCCGAGCATAGACTAGTTTTA
CCTTAGTCCGGTATAGCTTTGAGTTAAAATGTCTCCAGAATGTAACGAATGTCGTCTTGTTTGGCTTTGTATGAAATCCT
CTGTGTTTGCC-GAATTTTGTCCGGTTAGTTCAAAAAGTTGTTGAAATGTATGCAGACAGTGTTGGATGGCGACCTCCGG
CATGAGTGTCTGAGTACTGGCCCACCATGTCCGCGGACGGATGCGGGAGGAAATTTGCGGGTCGGCGTTGGAGATGCCCT
TAACTTCTACCCACAATATTTGCTTTCATAAAAGTTGAAACTAGC----------TTCCATATATCCTTTTCCACAG-AA
AAACAAGTAGTGACATATATC-AAATTCGTGGTTGAGCTATTGACATGCGCACAACATTGATGCTGTAATAGTACATGTG
AAAATAAAAGAAGTTAGAAGGCCAAGCCATTGAAGCGTGATAATAAACACATGCAGAGTGCATCACATCATAACTAACTC
CAAAACCATTGCACTATCGAGGAAGCTCCCTCCCACAAAGCAAACCAACATCTCCTAATCCTGCTGCCGGTGGATAATGC
ATCATCGCGGTTTCTCTCTCTTTTTATATCCCGACACACCCATATGGCCATTTATATTTTTTACACAGAAAAACAGGGAA
GCGACACGTATCAGCCTCCAGCTGTCTCCACCGAGCTCAAACATCACCTCCCTTGTCCTCCCGCCCCCATGCATGCACCC
ATGCACTTCAAGTTTTCAACACACCTCTTCTTCTCTCTCATCTTCACTCCCGCACACCTCACCATCTCTGCATCTCTCTT
TCTAGTCGATCTCTGCCCTTTCTA-----TCCCTATATATACCCACACGCACGCCTCCAATCCAACAC-AACTTAGAGCT
CACACCGTGACACTCCTGCAGCAAAGAACTTCTTGTACTTACACAGGCGCGTCACATAGCTTCGATCGTCATAGCTGCGA
TGGAGGTCGTGCCCGACAA---CGCCGGCGTTGCAGCGGCCGAGCAGTACCGTGGGGTGAGGAAGAGGAAGTGGGGCAAA
TGGGTGTCCGAGATCAGGGAGCCCGGCAAGAAGACGCGCATCTGGCTTGGCAGCTTCGAGTCGCCGGAGATGGCCGCCGT
GGCGCACGACGTGGCCGCGCTCCGGCTACGGGGGCACGAGGCCAGGCTCAACTTCCCGGGCCTCGTCCACCTCTTCCGCC
GGCCGGACACCGCCGAGCCTGACGACGTCCGTGCGGCTGCGCTGGAGGCCGCGGCCCAAGTCCGGTTCAGACCCGACCTC
GTGCTACAGCCGGGCGGCTGTGGCAGCAGCGGCGGCGGCGGATTCCCGGACCGGCTCGATGACGTGGCGTGGGATGCCAT
GCTTCGCTCTGATGATCTGGAGCCCGAGTCGCCCAACATGTGGGCGGAGCTGGCGGAGGCCATGCTGTTGGCCCCGCCTG
TCTGGGAGGGCAGCGCGGTGGACAATGACGAGTGGTCCCAAGGCTCGCTCTGGGACCCGTCTTGCTGGAGCTACTGATCG
CACAACTTTTGGTTCGTAGAGGTCGAAATTAATCAAAATTTTCCGAAAGACAACAGAAAATTTAGGGATTCCATCGAGCT
TAATTTCCGAACAAATTTAAGTATCGGTAGCTTAAGGGGATTCTTATGATATTTTGTCAGTATTGTGAGTGTGGCATTTC
TTTGTACTACAGCACGTGCGCGTGGAATTCAGTTGGACACAATAATTAAGTTCCACTGAGAATCAAACCTCCTTTCTAAT
TACTGGCGCAATCAAATAAATTTGAATTCCAATATACATCTGGCGTTCCCTCGGGAAGGTAAGTTGAGAGAACAATCATT
CCCCAAATAGAGAGGATCGAACCGTTCGTT----------AAAAAACTCACTCCCAGTGAACCCTCCAGAATTGTTATGC
GAAAATAGATAAAATTATTGTG-TTGTTGTAAAGGATTTGCCTAAAGTAAAATTTGACATGTTGTATACAAAAATTGTCA
GAAAATTGTCATGCTACAACAAAGCTTTTCCATGGGTCTTGGGGAAACCGTCATAATTGAAGCATGGAGATTGACCAGCC
TAAATAAAAGAAATGATGAAAATTGCCACGCTCTAGATTTGTCGTCTAGCTACATCAACGAAAG-AAATATGAGAATTAC
CATGTTGTACAAAGATAAATTGA--------AATGTGTTCGCTCATACAGTCATCCTGAGCGAACTCAAATATTGTCGTT
ATCACGTTGTTCGCTTAGAGGGTGCACGGGATTTGGCGGCGCATAGGATATTCGTGCGGAAAACCTATAAAACTAGCGTC
AGTTGTAC-AGCATTAGAGATAAATTTTGCTGCCATGAGAATTTGCAGGATTAACTGAAAATCAAACCTCGTTTCCGTTG
TTTCAGAATCATTTGAATTAAGATAGGA-TTCCATGGAAGTTTGTGACGCGCGAGGAAATTTCCGTAGAATGACGATGC-
AGATATACTACCGCGACAAGATGGTACGCGTTATCCCACTGTTTCGTCCTCGCCCGTACCACCCTGACG--
>chr4A_3
CGGCCGGT--CATAGACTAGTCAAGGGTACCCGTGTTGTGAGAATGGATATGTGCCGGCGCCGAGCGTAGACTAGTTTTA
CCTTAGTCTGGTATAGCTTTTAGTTAAAAAGTCTCCAGAATGTAACGAATGTCGTCTGGTTTGGGTTTGTATGAATTCCT
CTGTATTTCCATGAATTTTGTCCGGTTAGTTCAAAAAGTTATTGAAATGTATGCGTACAGTGTTGGATGGCGGCCTCCGA
CATGAGTGTCTGCGGACTGGCCCTCCCTGTCCGCGGACGGATGCGGGAGGAAATTTACGGGTCGGCGTTGAAGATGCCCT
TAGCTTCTACCTATAGTATTTGCTTTCATAAAAGTTGACACTAGCCACTTTATAGTGCCATATATCCTTTTCCACAAAAA
AAACAAGTAGCGACATATGACAAAATTCGTGGTTGAGCTATTGACATGCACACAACATTGATGTTGTAATAGTACATGTA
AAAATAAAAGAAGTTACAAGGCCAAGCCATTGAAGCGTGATAATAAGCACATGCATAGTGCATCACATCATAACAAACTC
CAAAACCATTGCACTGTCGAGGAAGCTCCCTCCCACAAAGCAAACCAACATCTCCTAATCCTGCTGCCGGTGGATAATGC
ACCATCGCGGTATCTCTCTCTTTCTATATCCCAACACACCCATATGGCCATTTATATTTTTTACAAAGAAAAACAGGGAG
GCGACACGTATCAGACTCCAGCTGTCTCCACCCAGCTCAAACACCACCTCCCG-----------CCCCATGCATGCACCC
ATGCACTTCAAGTTTTCAACACACCTCTTCTTCTCTCTCATCTTCACTCCCGCACACCTCACCATCTCTGCATCTCTCTT
TCTAGTCGATCTCTGCCCTTTCTATCCCTTCCCTATATATACCCACACGCACGCCTCCAATCCAACACCAACTTAGAGCT
CACGCTGCGACACTCCTGCAGCAAACAACTTCTTGTGCTTACACAGGCGCATCACATAGCTTCGATCGTCATTGCTGCGA
TGGAGGTCGTGCCCGACAATGCCGCCGGCGTTGCGGCGGCCGAGCAGTACCGTGGGGTGAGGAAGAGGAAGTGGGGTAAG
TGGGTGTCCGAGATCAGGGAGCCCGGCAAGAAGACGCGCATCTGGCTTGGCAGCTTCGAGTCGCCGGAGATGGCCGCCGT
GGCGCACGACGTGGCCGCGCTCCGGCTACGGGGGCACGAGGCCAGACTCAACTTCCCGGGCCTCGCCCACCTCTTCCGCC
GGCCTGACACTGCCGAGCCCGACGACGTCCGTGCGGCCGCGCTGGAGGCCGCGGCCCAGGTCCGGTTCAGGCCCGACCTC
GTGCTACAGCCGGGCGGCTGTGGCAGCAGCGGCGGCGGCGGCTTCCCTGACCGGCTCGATGACGTGGCGTGGAATGCCCT
GCTTCGCTCTGATGATCTGGAGCCCGAGTCGCCCAACATGTGGGCGGAGCTGGCGGAGGCCATGCTGTTGGCCCCACCTG
TCTGGGAGGGCAGCGCGGTCGACAATGACGAGTGGTCCCAAGGCTCGCTCTGGGACCCATCTTGCTGGAGCTACTGATCG
CACAACTCTTGGTTCGTAGAGGTCGGAATTAATCAAAAATTTCCGAAAGACAACAGAAAATTTAGGGATTCCATCGAGCT
TAATTTCCGAACAAATTTAAGTATCGGTAGCTTAAGGG-ATTCTTATGATAGTTTGTCAGTATTGTGAGTGTGGCATTTC
TTTGTACTACAACACGTGCGCGTGGAATTCAGTTGGACACAATAATTAAGTTCCACTGAGAATCAAACCTCCTTTCTAAT
TACTGGCGCAATCAAATAAATATGAATTGCAATATACATCTGGCGTTCCCTTGGAAAGGTAACCTGAGAGAACAATCATT
CCCCAGACAGAAAGGATCAAACGAACATTTTCGTTCGCTAAAGAAACTCACTGCCAGTGAACCCTCTAGAATTGTCATGC
AAAAATAGATAAAATTGTTGTG-TTGTTGTAAAGGATTTGCCTAAAGTAAAATTTGC-----------CAAAGATTGTCA
GAAAATTGCCATGCTACAGCAGAGTTCTTCCATGGGTTTTGGGAAAATCGTCATGATTGAAACATGGAGATTTGCCACTT
AAAAAAAAAGAAATGACGAAAATTGCCATGCTCAAGATTTGTCGTCTTGCGACATCAACGAAAAAAAATGTGGGAATTGC
CATGCTGTACAAACATAAAATGACATTCCCGAATGTGTTCGCTCATATTGTCATCCCAAGC-AAATCAAATACTGTTGTT
ATCATGTTGTTCGCTTAGAGGGTGCACGGGATCTGGCGGTGCATAGGGTATTCGTGCCGAAAACCTATAAAACTAACGTC
ACTTGTATTAGCATTTGAGATAAATTTTGCTGTCATGAGAATTTGTAGGATTAACTGAAAACCAAACCTCGTTTCCGTTG
TTTCAGAATCATTTGAATTAAGACAGGA-TTCCATGGAAGGTTGTGACGCGCGAGGAAATTTCCGTAGAATGACGATGC-
AGATATACTACCGCGACAAGATGGTACGCGTTATCCCACTGTTTCGTCCTCGCCCGTACCACCCTGACG--
>SNPs
------SS-------------------------------------------------S----------------------
---------S----------------------------------------------------------------------
S----------------------------------------------------S---S----------------------
-----------------------------------------------S----------S---S-----------------
---------------------------------------------------S----------------------S-S-S-
-------------------------------------------S---------------------------------S--
--S-----------S----S------------------------------------------------------------
------------------S-------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------------------S-------------------------------
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S-------------------------------------------------------------------------------
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--------------------------------------------------------------S-----------------
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--------------------------------------------S---------S--------------------S----
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------------S---------------------------------------------------S-------------S-
------SS---------------------------------S----------------------S---------------
--------------------------SSSSSS--------------S---S-----SS----------------------
-S-------------S------S----------------------S----------------------------------
------S-------S-S--------------S------------------------------------------------
S-----------------------------S----S----------------------S--------------------S
----------------------SS---------------------------------------------------S----
-S---------S--S-------------------------------------S---------------------------
--------------------------------------------------------S-----------------------
--------------------------S-S----------S-----------S---------------------------S
------------------------S--------------------------------------S-----SS
>forward_299
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---------------------------------------GATGCGGGTGGAAATTTGCA---------------------
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>reverse_2087
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------CGTCATGCCAGAACAGAGCT------------------------------------------------------
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