>input_sequence_76009
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--------------------------------------------------------------------------ATGGCC
TCCTTCCCGCTGGCATCCGCCGCCCGTTCCCTCCCCACCATAGCATCCCACCTCCCGGCAGCCGCGACCACCCGCAGCGT
CTCCATCCCGGCCTCCCCCGTCCCCGCGGCGAAGAACGCCGCCTCCTGCAGCCTCAGCACCAGGAGCCGCCGCAGGCCAA
CCGTTCGACGGAACGCCGCGGAGACCTACGTCCCAGGCTCCGGCAAGTACATCGCGCCGGACTACCTCGTGAAGAAGGTG
TCGGCAAAGCAGCTGGAGGAGCTCGTCAGGGGGGAGCGGAAGGTGCCGCTCATCGTGGATTTCTACGCCACCTGGTGCGG
GCCGTGCGTGCTCATGGCGCAGGACATCGAGACGCTCGCGGTCGAGTACGAGGACAGCGCCTTGTTCGTCAAGGTGGACA
CGGACGAGGAGTACGAGTTCGCAAGGGATATGCAGGTACGGGGACTGCCAACGCTGTATTTCTTCAGTCCGGATCAGGGC
AAGGACGCCGTTAGGACCGAGGGGCTGATTCCTATTGAAATGGTCAGGAACATCATCGAGAATGAGCTGTGA--------
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-----------------------------------
>chr4D_1_TraesCS4D01G073500
ATGCATGTGGGCCATATGTTTAGTTGGTTCCATATGCCATAGGCGTTTGATTGTCGTTTCACGATAGGATTGGTAAATCT
TATTTGGCGAGTGCAACTCATACATAACGCCCGCACGCTC-------------------------------------CCA
CCCTGTTTTGTGTTTTTGGG-CTTCTTACCTATTTTA-AAAATATATTGTTGCCCTTTTTTCAACTCTTTTTATGTTTCT
TTTCA-TTTTTTCGCTATAAAAATCATGATTTTTTTTGGAAATGTTGTGATTTTTTAAATTCGCAAATACTTGTTCAATT
CTGGAATA-TTTTTTAATTTCATGAAATTCTTTCAAATTAATTATTTTTTTAACTCTGCAAACTTTTTATAATCTATAAA
AAGCAGAGGCGTTGTTTTTTTGTTTCCTGAGAAATTTTATTTTTTGAGAATTTTTTCTTGAACTAGTAAGAGCAAATAGA
TGATGTAAAATACATCATCAAATTATAGTTAGAGTAAAATTTACATCATCAAAAAGTGGGTTTTTACACCAT--------
CTCCAACTTCAACAGATGATGTAAAATTTAGATCACTAGAAAACCTCCAACTCCAACAGATGATGT-AAAATTACATCAC
TGCAGAGGCGGCCATGGTGAGGTGCGGTGCAACGACG-TTAGTGGCCACGGGGGTCCGAG-G------------------
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---------------------------ATTGTAGTCGTCGCTAGGTGGTCTACAGATTTGGATGCAATTTTTGTTACTTC
TCATGTTATTGGTGCTACCAGGATGTTTGATGAATACTAGATCGGAAGTTTTTTTCTGCAGAAAAAAAAGCTACTGGTTT
TTCCCTTTTTTTTATCTAAAAAAAAGTGATG----------------------------------------GAGCCAAAG
AGTGAGTGGTGACCGAGCCAGTGC--------------------------------------------------------
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------------------------------------------------------------------CCTAGTGGGCCGGC
TCAGGTGTGCGCTATAGGGGCGCCTCCCGATTGGAAGC---------------AACCAGTGAAAGGAGTCCTCTTCAGTG
CGCACGCACGCAAGCAACCCAAACCCCTGACCCCGAGGATAGGATTTTTGCTCGTCCCCCAAATCTCTCCGGCCATGGCC
TCCTTCCCGCTGGCATCCGCCGCCCGTTCCCTCCCCACCATAGCATCCCACCTCCCGGCAGCCGCGACCACCCGCAGCGT
CTCCATCCCGGCCTCCCCCGTCCCCGCGGCGAAGAACGCCGCCTCCTGCAGCCTCAGCACCAGGAGCCGCCGCAGGCCAA
CCGTTCGACGGAACGCCGCGGAGACCTACGTCCCAGGCTCCGGCAAGTACATCGCGCCGGACTACCTCGTGAAGAAGGTG
TCGGCAAAGCAGCTGGAGGAGCTCGTCAGGGGGGAGCGGAAGGTGCCGCTCATCGTGGATTTCTACGCCACCTGGTGCGG
GCCGTGCGTGCTCATGGCGCAGGACATCGAGACGCTCGCGGTCGAGTACGAGGACAGCGCCTTGTTCGTCAAGGTGGACA
CGGACGAGGAGTACGAGTTCGCAAGGGATATGCAGGTACGGGGACTGCCAACGCTGTATTTCTTCAGTCCGGATCAGGGC
AAGGACGCCGTTAGGACCGAGGGGCTGATTCCTATTGAAATGGTCAGGAACATCATCGAGAATGAGCTGTGAGTTCTGTC
TAGGCAACATAGTGTCTGTTGTAGCTACATTATTTAGCTGAGTCTTGTAGTAGTTCTTAGTATTTATTTAGGTGCAGCCT
GCGGTTGTTGATTCGAGCTTTGTGTT---GCTCGGCCGCAGGTTTGCGTATGCAAGATCTGCATGAGCAGAATGTAGCAT
CAGGGTTCGAGCCCGAGACTAACAAATTGGTTCTCTATTGCACCATTCTTGTGTGCTTTGTCATTGAAATCTTTGTTAGT
TTGTTAATTTTGTATGCACTGGATTTTGTCTTTGATCTTCCTGCGTATAAATTGACTTTAGATGCACTTACTGGTGGTAA
AAAAGAAATACCTCACGTCGCTGCTCACGCAACCCGCTGCTGCCGCCACACTCACGTTCCTCTCCCCCAACCTCGCGCTA
CTGCAGCGCACCGCCGCCACATTTCCTTGGCGGTGCTTGGCTGATGGAGCGTCGGCCACCGCTCATACCGCCGCTGCGAC
CCTGCCTCTCATCTCCTTGGAGTTGTTGCAACAGGAGGACCGCGAGCCGCCGCCTCCCGCACTAGACGACAATGTCTAGG
CCGTCAAGGATATCGTCCTTGACACAGGAGGGGCATGGGCTGCCGAGATGGCCGTCCGCGGTGCGATCATCGTTGTCCTT
CGCGCCCTCTTGGATGCAGTCGCCACCACCACTTGCCCCTGTTGAGCTCATGTCGTCACTGGGAGGAGCGTGCGGCACCA
CCGCGACGGACAGCCTTCCTCTTATATCCGCTGGACAGGGCTGCTGTCCGTGGGCTGCTTGACTCCTCCGCCACCCCTCT
GCCAGGAAGATGGGAATCTCCTGTGGGGAAAGTAAAGGTGGATGGCAGAGAAGCCCCAACGACAGGGTAACCACGGAAAG
AGGAGCCAAGCATAGGAAGGGGTGGCCATAGGAGAACAATGAACAAGGGAGGGGTTTTGTGAACTTTTGGCGGTGACAGG
TTGCTCCCCTGCGAAGTGAAGGCTGCAGCGACAAC
>chr4B_1
ATGCATGTGGGCCATATGTTTAGTTGGTTCCATATGCCATAGGCGTTTGATTGTCG-TTGACGATAGGATTGGTAAATCT
TATTTGGCGAGTGCAACTCATACATAACGCTCGCAGGCTCCCAAGCGATAGCTTGTAATGGGCAAACCTATTAGCCTCCA
CCCTGTTTTGTGTTTTTGGGGCTTCTTACCTATTTAAAAAAAAATATTGTTGCCCCTTTTTCAACTCTTTTTATGTTTCT
TTTCATTTTTTTCGCTATAAAAATCATGCTTTTTTTTGAAAATGTTGTGATTTTTTAAATTCGAAAATACTTGTTCAATT
CCGGAATA-TTTTTCAATTTCATGAACTTCTTTCAAATTAATTGTTTTC-TAACTCTGCAAACTTTTTATAATCTATAAA
AAGCAGAGGCG-TTGTTTTTTGTTTCGTGAGCAATTTTATTTTTTGAGATTTTTTTCTTGAACTAGTAAGAGTAAATAGA
TGATGTAAAATACATCATCAAATTATAGTTAGAGTAAAATTTACATCACCAAAAAGTGGATTTTTACATCAT--------
CTCCAACTTCAACAGATGATGTAAAATTTACATCAATAGAAAATC----ACTCCAAAAGGTGATGTAAAATTTATATCAC
CGCGAAAGCGGCCATGGTGAGGTGCGCTGCAGCGACG-TTAGTGGCCGCGGGGGTCTGAGTG------------------
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---------------------------ATTATAGTCGTCGCTAGATGGTCTACAGATTTGAATGCATTTTTTGTTACTTC
TCATGTTATTGGTACTGCCATGATGTTTGATGAATA---GATCAGAAGTTTC---TTTCTGAAAAAAAAGCTGCTGGTTT
TTCCCTAAAC--------------AGTGCTGCTTTTTTTTATCTCAAAGAAAAGAAAAGAAAGAGTGATTAGAGCGAACG
AGTGAGTGGCGACCGAGCCAGTCCCTAAGGGCATATACAATGGTTCTATCTTAGCAATGCCATATAGGATAAACGATTAG
GTGAAGGAGAGAGAATTCATAAGAAAAGACCTGTCTTCTTTTATTTAAGAGAAGACAAGAGATGACCTCTTAACACAATA
TGTCTCACCACGTTTTTAGGAATAGCTAGTTATTGAAGATTGAAGATAAGACTAAAAGATGATCCATTGTAGACATGTTT
TTTTTATCATCTCTTAATTACATGCAAGACTTAAAATAAGACTATCTTATCAACCATTGTACATGCCCTAATGGGCCGGC
TCAGGTGTGCGCCTTAAA-----CTCCCGATTGCCTCAAAAAGAAAAAGAAAAAACCAGTGAAAGGAGTCCTCTTCAGTG
CGCACGCACGCAGGCAACCCAAACCCCTGACCCCGAGGATAGGATTTT-GCTCGTCCCCCAAATCTCTCCGGCCATGGCC
TCCTTCCCGCTGGCATCCGCCGCCCGTTCCCTCCCCACCCTAGGGTCTCACCTCCCGGCAGCCGCGACCACCCGCAGCGT
CTCCATCCCGGCCTCCCCTGTCCCTGCGGCGAAGAACGCCACCTCCTGCAGCTTCAGCACCAGGAGCT---GCAGGCCAA
CCGTTCGACGGAACGCCGCAGAGACCTACGTCCCAGGCTCCGGCAAGTACATCGCGCCGGACTACCTCGTGAAGAAGGTG
TCGGCCAAGGAGCTGGAGGAGCTCGTCAGGGGGGAGAGGAAGGTGCCGCTCATCGTGGATTTCTACGCCACCTGGTGCGG
GCCGTGCGTGCTCATGGCGCAGGACATCGAGATGCTCGCCGTCGAGTACGAGGACAGCGCCTTGTTTGTCAAGGTGGACA
CGGACGAGGAATATGAGTTCGCAAGGGATATGCAGGTAAGGGGACTGCCAACGCTGTATTTCTTCAGTCCGGATCAGGGC
AAGGACGCCATTAGGACCGAGGGGCTAATTCCTATCGAAATGGTCAGAAACATCATCGAAAACGAGCTGTGAGTTCTGTC
TAGGCAGCATAGTGTCTGTAGTAGCTACATTATTTAGCTGATTCTTGTAGTAGTTCTTAGTATTTATTTAGGTGCAGCCT
GCGGTGGTTGATTTGAGCTTTGTGTTGCTGCTCGGCCGCAGGTTCGCGTATGCAAGATCTGCATGAGCAGAATGTAGCAT
CATTGTTCGAACCTGAGACTAACAGATTGGTTCTCTATTGCACCATTCTTGTGTGCTTTGTCATTGAAATCTTTGTTAGT
TTGTTAA-TTTGTATGCACTGGATTTTGTCTTTTATCTTACTGCGTATAAATTGACTTTAGATGCACTTACTGGTGGTAA
AAAAGAAACACCTCACGTCGCTGCACACGCAACCCGCTGCTGCCGCCACACTCACGTTCCTCTCCCCCAACCTCGCGCTA
CTGCAGCGCACCGCCGCCACATTTCCTTGGCGGTGCTTGGCTGATGGAGCGTTGGCCACCGCTCATACCGCCGCTGCGAC
CCTGCCTCTCATCTCCTTGGAGTTGTTGCAACAGGAGGACCGCGAGCCGCCGCCTCCCGCACTAGACGACAATGTCTAGG
CCGTCAAGGATATCGTCCTTGACACAGGAGGGGCATGGGCTGCC-AGATGGCCGTCCGCGGTGCGATCATCGTTGTCCTT
CACGCCCTCTTGGATGCAATCACCGCCACCACTTGCCCCTGTTGAGCTCATGTCGTCACTGGGAGGAGCGTGCGGCACCA
CCGCGACGGTCAGCCTTCCTCTTATATCCGCTGGACAGGGCTGCCGTCCGTGGGCTGCTTGACTCCTCCGCCACCCCTCT
GCCAGGAAGATGGGAATCTCCTGTGGGGAAAGTAAAGGTGGATGGCAGAGAAGCCCCAACTACAGGGTAACCACGGAAAG
AGGAGCCAAGCATAGGAAGGGGTGGCCATAGGAGAACAATGAACAAGGGAGGGGTTTTGTGAACTTTTGGCGGTGACAGG
TTGCTCCCCTGCGAAGTGAAGGCTGCAGCGACAAC
>chr4A_1
ATGCATGTGGGCCATATGTTTAGTTGGTTCCATATGCCATAGGGGTTTGATTGTTGTTTGACGATAGGATTGGTAAATCT
GATTTGGCGAGTGCAACTCATACACAACGCCCACACGTTGCCGAGCGATAGCTTGTAATGGGCAAACCTATTAGCCTCCA
CCCTGTTTTGTTTTTTGGGA-CTTGTTACCTATTTTT-AAAATATATATTTGCCCCTTTTTCAACTCTTTTTTACTTTTA
CTTTC-TTTTTTTGCTATAAAATCATGA---TTTTTTGAAAATGTTGTAATTTTTTAAATTCATAAATACTTGTTCAATT
CATGAATATTTTTTCAATTTCATGAACTTATTTCAAATTAATTATTTTTTTAACTCTGCAAACTTTTTATAATCTACAAA
AAGCAGAGGT-TTTTTTTTCTGTTTCCTGAACAATATTATTTTTTGAGAATCATTTCTTGAACTAGTAAGAGCAAATAGA
TGATGTAAAATACACCATCAAAT-----------TAAAATTTACATCACCAAAAAATGGGTTTTTACATCATAAAAAAAT
CTCTAACTTCAACAAATGA------------------------CCTCCAACTCCAA------ATGTAAAATTTACGTCAC
CGCGGAGGCGGCCATGGTGAGGTGCACCTCAGCGGTGATTAGTGGCCGCCGGGTCTGAGGAGGCGTCCATGAGGTCCGTT
GGCGGCAGTTAGGGCTGCGCGCGTTTTGGTCGAGTGATGCAAATTTGCATCACTTGATGCCCTATTTTACATCACGAGCA
AATCTCGAGTAAAAAAAAAATTACATCCTGTTGGAGCAGCGTTTTTGTGCCTTGATGATGTGAAATAATATTTTACATCT
ACATTATTAATCGGAGTTGCTCTTTTTTAGGGATTATTGGAGATGCTCTAATTGGCTTCCATGAGGGAAGAACGATGACA
GCGGCGCGCCTTTGGCTCGTTCCAGTTATCGTAGTCGTTATTAGGTGGTCTACAGGCTTGGATGTAATTTTTGTTACTTC
TCATGTTCTTTATGCTGCCATGATATTTGATGAATACCAGATCTGAG----TTTTTTTCTGAAAAAAAACTGCCTGTTTT
TTTCATGAAC--------------AGTGATG----------------------------------------GAGCGAACG
AGTGAGTGGCGACCGAGCCAGTGCCTACAAACCAAAGG------------------------------------------
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-------------------------------------------------------------------GTCCTCTTCAGTG
CGCACGCACGCAAGCAACCCAAAGCCCTGACGCCGAGGATAGGATTTT-GCTCCTCCCCCAAATCCCTCCGGCCATGGCC
TCCTTCCCGCTGGCATCCGCCGCCCGTTCCCTCCCCACCATAGCGTCCCACCTCCCGGCAGCCGCGACCACCCGCAGCGT
CTCCATCCCGGCCTCCCCCGTCCCCGCGGCGAAGAACGCCGCCTCCTGCAGCCTCAGCACCAGGAGCCGCCGCAGGCCAG
CCGTTCGACGGAACGCCGCGGAGACCTACGTGCCAGGCTCCGGCAAGTACATCGCGCCGGACTACCTCGTGAAGAAGGTG
TCGGCCAGGGAGCTGGAGGAGCTCGTCAGGGGGGAGCGGAAGGTGCCGCTCATCGTGGATTTCTACGCTACCTGGTGCGG
GCCGTGCGTGCTCATGGCGCAGGACGTCGAGACGCTCGCGGTCGAGTACGAGGACAGCGCCTTGTTTGTCAAGGTGGACA
CGGACGAGGAGTACGAGTTCGCGAGGGATATGCAGGTACGGGGACTGCCCACGCTGTATTTCTTCAGCCCGGATCAGGGC
AAGGACGCCGTTAGGACCGAGGGGCTGATTCCTATTGAAATGGTCAGGAACATCATCGAAAACGAGCTGTGAGTTTTGTC
TGGGCAACGTAGTGTCTGTAGTAGCTACATTATTTAGCTGAGTCTTGTAGTAGTGATTAGTATTTCTTTAGGTGCAGCCT
GCGGTGGTTGATTCGAGCTTTGTGTTGCTGTTCGGCCGCAGGTTCGCGTATGCAAGATCTGCATGAGCAGAATGTAGCAT
CAGGGTTTGAGCCTGAGACTAACAAATTGGTTCTCTATTGCACTATTCTTGTGTGCTTTGTCATTGA-------------
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>SNPs
-----------------------------------------------------------S--------------------
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-------------------------------------------------------S------------------------
----------------------------S---------S------------------------S----------------
-S------------S-----------S-----------------------------------------------------
-------------S-----------------S------------------------------------------------
------------------------------------------------S-------------------S-----------
------------------------------S----S--------------------S--S----------S---------
S--S----------------------S----S---------------S--------S-----------------------
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----------------S---S----------------S-----S-----------S-S-S------------S-------
------SSSSSSSSSSSSSSSSSS---------------------------------------------------S--S-
---------S----------------------------------------------------------------------
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----------------------------------------------------------------------S---------
------------SS--SSSSSSS----------SSSSS------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------S-----------------------------------
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-----S---S----------------------------------------------------------------------
------------------------------------------------------------------S-------------
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-----------------------------------------------------------S--S-----------------
-------------------S------------------------------------------------------------
-----S--------------------------------------S-----------------------------------
-------------S------------------------------------------------------------------
-------S-------------------------S-----S----------------------------------------
--------S---------------S-------------------------------------------------------
----------------------------------------------------S---------------------------
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--------------------------------------------S-----------------------------------
-S----------------S--S--S-------------------------------------------------------
---------S----------------------------------S-----------------------------------
------------------------------------------------------------S-------------------
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>forward_1539
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-------------------------------------------------------------------------------C
TCAGGTGTGCGCTATAGGG-------------------------------------------------------------
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>reverse_3101
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------------------------------------------------------------GACAGGGTAACCACGGAAAG
A-------------------------------------------------------------------------------
-----------------------------------
