>input_sequence_76003
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------------------------------------------ATGGCTCCCAGATCGGAGCACGCCGGCGGGAGCGCCTC
GGCGGCAGCGGCGGCGGCGGCC------GCGGCCGCCCAGAGCCACGGATCCGGGCTCGACTCCATGGACCCCTTCTTCC
ACGCGCTCCGCGTGGTCCCCTTCGCCTTCCTCCAGCCGCCGCGCACCCGCCTGAAGCTGCCGTCCAACCTGGCGCTCCCG
TCCCCGATGGTCGTCTTCTCCCTCATCCTGTTCACCTACTTCGCCGTCGTCTCCGGCCTCGTCTACGACGTCATCGTCGA
GCCCCCGGGCATCGGCAGCTCGCAGGACCCGGCCACCGGCGCCGTCCGCCCCGTCGTCTTCCTCCCAGGCCGCGTCAACG
GCCAGTACATCATCGAGGGCCTCTCCTCCGGCTTCATGTTCCTCCTCGGGGGCGTCGGGGTCATCCTCCTCGATCTGGCG
GTCGACCGCACCAGGCCCCGCAGCCTGCGCGTCTCCTTCGGCGGCGCCGGCGTCGCCGCCATCGTCATCGCCTACGCCAT
GGCCATGCTCTTCCTCCGCATCAAGATACCCGGATACCTATGGTGA----------------------------------
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>chr4A_1_TraesCS4A01G395900
GGGCCGCCGGGCAGGGTGGCCGGAGGCCGGCGGCGGCCGGATCTGGGGAGGGGAGCTGAAAACTCCCAGGGGAGCTGAAA
ACTCCCTCCCGCGCGAAACTGACGAGAGAACCGGGTCGGGGAGGGGTCGGGCTGCCAACCCCTGTTTCTACAGGCTGGGA
AGGAGAATAGGGGTTGAGCCTCTAAAAAAATTTAAGGGTTTAAGGGTTAAGGGGTTCTATTCTTTACGATTTTTTCGTCT
CAACCCGTAAAAAAGCGGTTATTTTTGAGGGTTTGAGGGTTTAGGGGTACTACTAGTAATGCTCTAAGGAAATACTTGTT
TGCCTCTTGTAGAGGTTTATTGTAAATGCCTTCAAGTTATCTCTGTTTGCGAGTGGAAGTGTTGTGACGGTGAAAATCTT
CAAGTGTGCTTGTATCTCTTTACGGAGGGAGTAATAATGAAGTACGGATATCTTATCTATGTAATAAGTGTTTATGTGGG
GGTGAAGCTAATTTAAGATACGTACCAATGTCTTAGTCCGGCATCACGCACATCCACCATCACCCTGCATAGCTGCTGCC
GAAGTACGATGACGATTAAGGGTCTCAGAGTGGATGTGGCGTAAAAAAGAACGCACTTGTTTTGGATAGGGTTTACCGAT
ACACAATGAAACATTAAGGTACACCTTGGACGGGAATAAAAATCCTAATAATACACTTTAAAACAAGATAAATTCTGGAA
AACAGTAAAAATGAAAGTACATAACGAATCTCAAAGCAAGCACGGACGGTGCATCCATCCACGATAGAATTGCTTTTCTC
AATTTGTTAGTCGATACTCTGTTTTTTCAAACTGTTAGTCGACATACTCACTAGTGCGTGGTGCTAAAAAAAACTAGTTT
TTTAAGGCAAAAAAAAAAACCTAGTGCGTGCTCTGCTTTAAGATGTGTGCGATCCGGCTTCATCACCAC--TGACCATCC
CCCACGGCCCACACACACCAGACCCAAATCCCCCAAGTCTCCATGGCTCCCAGATCGGAGCACGCCGGCGGGAGCGCCTC
GGCGGCAGCGGCGGCGGCGGCC------GCGGCCGCCCAGAGCCACGGATCCGGGCTCGACTCCATGGACCCCTTCTTCC
ACGCGCTCCGCGTGGTCCCCTTCGCCTTCCTCCAGCCGCCGCGCACCCGCCTGAAGCTGCCGTCCAACCTGGCGCTCCCG
TCCCCGATGGTCGTCTTCTCCCTCATCCTGTTCACCTACTTCGCCGTCGTCTCCGGCCTCGTCTACGACGTCATCGTCGA
GCCCCCGGGCATCGGCAGCTCGCAGGACCCGGCCACCGGCGCCGTCCGCCCCGTCGTCTTCCTCCCAGGCCGCGTCAACG
GCCAGTACATCATCGAGGGCCTCTCCTCCGGCTTCATGTTCCTCCTCGGGGGCGTCGGGGTCATCCTCCTCGATCTGGCG
GTCGACCGCACCAGGCCCCGCAGCCTGCGCGTCTCCTTCGGCGGCGCCGGCGTCGCCGCCATCGTCATCGCCTACGCCAT
GGCCATGCTCTTCCTCCGCATCAAGATACCCGGATACCTATGGTGAGGCCTAGAAATCATCTCCCT-ACTTCATTATG-C
CAGATCCGCCATCAGATCTGAGGATACTACTAAGCTGTTGCTCATGACTCTAGTAGTGTACAATTTAAGTTATGTTACCT
TAGGATGTTGGGTCGCACTCAAATTTCAGTCGGTGATCAGAGGATTATCTATTTCAAATGATAGTAAACTGTTGTGTGTT
CCTTTTTCCTGAAACTGTGATTGCGTGATAATGCTGCTGTCAAGATCCATTTTCTATTTAGTGTATCTGTGCAGTTTCAG
AGAATCTTTCTTGTTTTGCGTTGTGTGGTAAGATATTTCTCATAAATCAGTTATAGATGCGACCATACAAGTGTAAGAAT
AGTGTACTAGGTCCGTCCTTCCGTAGTAATAAGCCAAATGACAAGTGTGTAATGCAGATGATTTCTGTCTAATATTTTCC
TGAAATACAGTCTGTTCAAAAAGGCCGCCTAGTTTGGGTCTTGGCTAGGATAATGTTAAATACTCCCTCCGTAAAGAAAT
ATAAGAGCGTTTAGATCACTAAACGCACTAAACGCTCTTATATTTCTTTACGGAGGGAGTAGTTTACTAGGTCTGTCGTA
ATAAGCCAAATGACAGCTGAATAACGTAGATGATTTTTGTATAACAGTTTCCTGAAAGAGTGTTCTAAAAGGAGCCTAGT
TTGGGCCTTGGATAGCATAATGGAAATAATTTACTAGGTCTGTAGTGATAAGCCAAAGGGCAAGAGTAATGTAGATGATT
TTGTCTAATATTTTCCTGAAAGGTGAAGTGTTTTGTACGGCGGCCTAGTTTGGCCCTGGGCTAGTATAATGGAAATAGTA
TACTGGGTCCATAGTATAAATGCAAAGGGCAAGTGAGACATGTAGAAATATAAGAGCGTTTAGATCACTCTTATATTTCT
TTACGGAGGGAGTAGATGATATTGTTTAATATTTTCCTGAAAGGTGAAGTTTTCTAAAAGGCGGCCTAGCTTGGGCCTCC
GCTCTTAT
>chr7D_915
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----------------------------------GCTTTAAGATGTGTGCGATCCGGCTTCATCCCCACGCTGACCATCC
CCCACGGCCCACACACACCAGACCCAAATCCCCCGAGTCTCCATGGCTCCCAGATCGGAGCACGCCGGCGGGAGCGCCTC
GGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCCGCCCAGAGCCACGGATCCGGGTTCGACTCCATGGACCCCTTCTTCC
ACGCGCTCCGCGTGGTCCCCTTCGCCTTCCTCCAGCCGCCGCGCACCCGCCTGAAGCTGCCGTCCAACCTGGCGCTCCCG
TCCCCGATGGTCGTCTTCTCGCTCATCCTGCTCACCTACTTCGCCGTCGTCTCCGGCCTCGTCTACGACGTCATCGTCGA
GCCCCCCGGCATCGGCAGCTCCCAGGACCCGGCCACCGGCGCCGTCCGCCCCGTCGTCTTCCTCCCCGGCCGCGTCAACG
GCCAGTACATCATCGAGGGCCTCTCCTCCGGCTTCATGTTCCTCCTCGGGGGCGTCGGGGTCATCCTCCTCGACCTGGCG
GTCGACCGCACCAGGCCCCGCAGCCTGCGCGTCTCCTTCGGCGGCGCCGGCGTCGCCGCCATCGTCATCGCCTACGCCAT
GGCCATGCTCTTCCTCCGCATCAAGATACCCGGATACTTATGGTGAGGCCGAAAATTCATCTCCCCCACTTCGTTATG-C
CAGATCCGTCATCAGATCTGAGGA---TACTAAGCTGTTGCTGATGACTC---TAGTGTACAATTTAAGTTATGTTACCA
TAGGATGTTGGGTTGCACTCAAATTTCAGTTGGTGATCTGAGGATTATCTATTTCAAATGATAGTAAACTGTTATGTGTT
CCTTTTTTCTGAAATGGTGATTGCATGATAATGCTGTTATGAAGATCCATTTTCTGTTTGCTGTATTTGTGAAATTTCAG
AAAATC--------------------------------------------------------------------------
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>chr7A_926
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---------------------------------------------TGTGCGATCCGGCTTCATCCCCCCACTGGCCATCC
CCG--------CACTCACCAGACCCAAATCCCCCAAGTCTCCATGGCCCCCAGATCGGAGCACGCCGGCGGGAGCGCCTC
GGGGGCAGCGGCGGCGGCGGCG------GCCGCCGCCCAGAGCCACGGATCCGGGTTCGACTCCATGGACCCCTTCTTCC
ACGCGCTCCGCGTGGTCCCCTTCGCCTTCCTCCAGCCGCCGCGCACCCGCCTGAAGCTGCCGTCCAACCTGGCGCTCCCG
TCCCCGATGGTCGTCTTCTCGCTCATCCTGCTCACCTACTTTTCCGTCGTCTCCGGCCTCGTCTACGACGTCATCGTCGA
GCCCCCCGGCATCGGCAGCTCCCAGGACCCGGCCACCGGCGCCGTCCGCCCCGTCGTCTTCCTCCCCGGCCGCGTCAACG
GCCAGTACATCATCGAGGGCCTCTCCTCCGGCTTCATGTTCCTCCTCGGGGGCGTCGGGGTCATCCTCCTCGACCTGGCC
GTCGACCGCACCAGGCCCCGCAGCCTGCGCGTCTCCTTCGGCGGCGCCGGCGTCGCCGCCATCGTCATCGCCTACGCCAT
GGCCATGCTCTTCCTCCGCATCAAGATACCCGGGTACCTATGGTGAGGCCGAAAAATCATCTCCCC-ACTTCGTTATGCC
CAGATCCGTCGTCAGATCTGAGGA---TGCTAAGCTGTTGCTGATGACTC---TAGTGTACAATTTAAGTTATGTTACCA
TAGGATGTTGGGTTGCACTCAAATTTCAGTTGGTGATCTGAGGACTATCTATTTCGAATGATACTAAGCTGTTG------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------S---------------
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---------------------S---------------------------------S------------------------
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--------------------S---------S-------------------------------------------------
------S--------------S--------------------------------------------S-------------
-------------------------------------------------------------------------S------
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--------------------------------------------------S-S------------S------S-------
--------S---------------SSS---------------S-------SSS--------------------------S
-------------S----------------S-------S-----------------------------------------
-------S------SS--------S-----------S-S-S--------------S---SS-----S----S-S------
-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_786
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----------------------------------------------CGGTGCATCCATCCACGATA--------------
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>reverse_2351
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------------------------------TTTTGTACGGCGGCCTAGTT------------------------------
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