>input_sequence_76000
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---------------------------------------------------ATGGAGGTCGTGCCCGACAATGCCGCCGG
CGTTGCGGCGGCCGAGCAGTACCGTGGGGTGAGGAAGAGGAAGTGGGGTAAGTGGGTGTCCGAGATCAGGGAGCCCGGCA
AGAAGACGCGCATCTGGCTTGGCAGCTTCGAGTCGCCGGAGATGGCCGCCGTGGCGCACGACGTGGCCGCGCTCCGGCTA
CGGGGGCACGAGGCCAGACTCAACTTCCCGGGCCTCGCCCACCTCTTCCGCCGGCCTGACACTGCCGAGCCCGACGACGT
CCGTGCGGCCGCGCTGGAGGCCGCGGCCCAGGTCCGGTTCAGGCCCGACCTCGTGCTACAGCCGGGCGGCTGTGGCAGCA
GCGGCGGCGGCGGCTTCCCTGACCGGCTCGATGACGTGGCGTGGAATGCCCTGCTTCGCTCTGATGATCTGGAGCCCGAG
TCGCCCAACATGTGGGCGGAGCTGGCGGAGGCCATGCTGTTGGCCCCACCTGTCTGGGAGGGCAGCGCGGTCGACAATGA
CGAGTGGTCCCAAGGCTCGCTCTGGGACCCATCTTGCTGGAGCTACTGA-------------------------------
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>chr4A_1_TraesCS4A01G227400
ACCCGTGTTGTGAGAATGGATATGTGCCGGCGCCGAGCGTAGACTAGTTTTACCTTAGTCTGGTATAGCTTTTAGTTAAA
AAGTCTCCAGAATGTAACGAATGTCGTCTGGTTTGGGTTTGTATGAATTCCTCTGTATTTCCATGAATTTTGTCCGGTTA
GTTCAAAAAGTTATTGAAATGTATGCGTACAGTGTTGGATGGCGGCCTCCGACATGAGTGTCTGCGGACTGGCCCTCCCT
GTCCGCGGACGGATGCGGGAGGAAATTTACGGGTCGGCGTTGAAGATGCCCTTAGCTTCTACCTATAGTATTTGCTTTCA
TAAAAGTTGACACTAGCCACTTTATAGTGCCATATATCCTTTTCCACAAAAAAAACAAGTAGCGACATATGACAAAATTC
GTGGTTGAGCTATTGACATGCACACAACATTGATGTTGTAATAGTACATGTAAAAATAAAAGAAGTTACAAGGCCAAGCC
ATTGAAGCGTGATAATAAGCACATGCATAGTGCATCACATCATAACAAACTCCAAAACCATTGCACTGTCGAGGAAGCTC
CCTCCCACAAAGCAAACCAACATCTCCTAATCCTGCTGCCGGTGGATAATGCACCATCGCGGTATCTCTCTCTTTCTATA
TCCCAACACACCCATATGGCCATTTATATTTTTTACAAAGAAAAACAGGGAGGCGACACGTATCAGACTCCAGCTGTCTC
CACCCAGCTCAAACACCACCTCCCG-----------CCCCATGCATGCACCCATGCACTTCAAGTTTTCAACACACCTCT
TCTTCTCTCTCATCTTCACTCCCGCACACCTCACCATCTCTGCATCTCTCTTTCTAGTCGATCTCTGCCCTTTCTATCCC
TTCCCTATATATACCCACACGCACGCCTCCAATCCAACACCAACTTAGAGCTCACGCTGCGACACTCCTGCAGCAAACAA
CTTCTTGTGCTTACACAGGCGCATCACATAGCTTCGATCGTCATTGCTGCGATGGAGGTCGTGCCCGACAATGCCGCCGG
CGTTGCGGCGGCCGAGCAGTACCGTGGGGTGAGGAAGAGGAAGTGGGGTAAGTGGGTGTCCGAGATCAGGGAGCCCGGCA
AGAAGACGCGCATCTGGCTTGGCAGCTTCGAGTCGCCGGAGATGGCCGCCGTGGCGCACGACGTGGCCGCGCTCCGGCTA
CGGGGGCACGAGGCCAGACTCAACTTCCCGGGCCTCGCCCACCTCTTCCGCCGGCCTGACACTGCCGAGCCCGACGACGT
CCGTGCGGCCGCGCTGGAGGCCGCGGCCCAGGTCCGGTTCAGGCCCGACCTCGTGCTACAGCCGGGCGGCTGTGGCAGCA
GCGGCGGCGGCGGCTTCCCTGACCGGCTCGATGACGTGGCGTGGAATGCCCTGCTTCGCTCTGATGATCTGGAGCCCGAG
TCGCCCAACATGTGGGCGGAGCTGGCGGAGGCCATGCTGTTGGCCCCACCTGTCTGGGAGGGCAGCGCGGTCGACAATGA
CGAGTGGTCCCAAGGCTCGCTCTGGGACCCATCTTGCTGGAGCTACTGATCGCACAACTCTTGGTTCGTAGAGGTCGGAA
TTAATCAAAAATTTCCGAAAGACAACAGAAAATTTAGGGATTCCATCGAGCTTAATTTCCGAACAAATTTAAGTATCGGT
AGCTTAAGGG-ATTCTTATGATAGTTTGTCAGTATTGTGAGTGTGGCATTTCTTTGTACTACAACACGTGCGCGTGGAAT
TCAGTTGGACACAATAATTAAGTTCCACTGAGAATCAAACCTCCTTTCTAATTACTGGCGCAATCAAATAAATATGAATT
GCAATATACATCTGGCGTTCCCTTGGAAAGGTAACCTGAGAGAACAATCATTCCCCAGACAGAAAGGATCAAACGAACAT
TTTCGTTCGCTAAAGAAACTCACTGCCAGTGAACCCTCTAGAATTGTCATGCAAAAATAGATAAAATTGTTGTG-TTGTT
GTAAAGGATTTGCCTAAAGTAAAATTTGC-----------CAAAGATTGTCAGAAAATTGCCATGCTACAGCAGAGTTCT
TCCATGGGTTTTGGGAAAATCGTCATGATTGAAACATGGAGATTTGCCACTTAAAAAAAAAGAAATGACGAAAATTGCCA
TGCTCAAGATTTGTCGTCTTGCGACATCAACGAAAAAAAATGTGGGAATTGCCATGCTGTACAAACATAAAATGACATTC
CCGAATGTGTTCGCTCATATTGTCATCCCAAGC-AAATCAAATACTGTTGTTATCATGTTGTTCGCTTAGAGGGTGCACG
GGATCTGGCGGTGCATAGGGTATTCGTGCCGAAAACCTATAAAACTAACGTCACTTGTATTAGCATTTGAGATAAATTTT
GCTGTCATGAGAATTTGTAGGATTAACTGAAAACCAAACCTCGTTTCCGTTGTTTCAGAATCATTTGAATTAAGACAGGA
-TTCCATGGAAGGTTGTGACGCGCGAGGAAATTTCCGTAGAATGACGATG-CAGATATACTACCGCGACAAGATGGTACG
CGTTATCCCACTGTTTCGTCCTCGC
>chr4B_3
--CCATGTCGTGACAATGGATATGTGCCGGCGCCGAGCATAGACTAGTTTTACCTTAGTCCGGTATAGCTTTGAGTTAAA
ATGTCTCCAGAATGTAACGAATGTCGTCTTGTTTGGCTTTGTATGAAATCCTCTGTGTTTGCC-GAATTTTGTCCGGTTA
GTTCAAAAAGTTGTTGAAATGTATGCAGACAGTGTTGGATGGCGACCTCCGGCATGAGTGTCTGAGTACTGGCCCACCAT
GTCCGCGGACGGATGCGGGAGGAAATTTGCGGGTCGGCGTTGGAGATGCCCTTAACTTCTACCCACAATATTTGCTTTCA
TAAAAGTTGAAACTAGC----------TTCCATATATCCTTTTCCACAG-AAAAACAAGTAGTGACATATATC-AAATTC
GTGGTTGAGCTATTGACATGCGCACAACATTGATGCTGTAATAGTACATGTGAAAATAAAAGAAGTTAGAAGGCCAAGCC
ATTGAAGCGTGATAATAAACACATGCAGAGTGCATCACATCATAACTAACTCCAAAACCATTGCACTATCGAGGAAGCTC
CCTCCCACAAAGCAAACCAACATCTCCTAATCCTGCTGCCGGTGGATAATGCATCATCGCGGTTTCTCTCTCTTTTTATA
TCCCGACACACCCATATGGCCATTTATATTTTTTACACAGAAAAACAGGGAAGCGACACGTATCAGCCTCCAGCTGTCTC
CACCGAGCTCAAACATCACCTCCCTTGTCCTCCCGCCCCCATGCATGCACCCATGCACTTCAAGTTTTCAACACACCTCT
TCTTCTCTCTCATCTTCACTCCCGCACACCTCACCATCTCTGCATCTCTCTTTCTAGTCGATCTCTGCCCTTTCTA----
-TCCCTATATATACCCACACGCACGCCTCCAATCCAACAC-AACTTAGAGCTCACACCGTGACACTCCTGCAGCAAAGAA
CTTCTTGTACTTACACAGGCGCGTCACATAGCTTCGATCGTCATAGCTGCGATGGAGGTCGTGCCCGACAA---CGCCGG
CGTTGCAGCGGCCGAGCAGTACCGTGGGGTGAGGAAGAGGAAGTGGGGCAAATGGGTGTCCGAGATCAGGGAGCCCGGCA
AGAAGACGCGCATCTGGCTTGGCAGCTTCGAGTCGCCGGAGATGGCCGCCGTGGCGCACGACGTGGCCGCGCTCCGGCTA
CGGGGGCACGAGGCCAGGCTCAACTTCCCGGGCCTCGTCCACCTCTTCCGCCGGCCGGACACCGCCGAGCCTGACGACGT
CCGTGCGGCTGCGCTGGAGGCCGCGGCCCAAGTCCGGTTCAGACCCGACCTCGTGCTACAGCCGGGCGGCTGTGGCAGCA
GCGGCGGCGGCGGATTCCCGGACCGGCTCGATGACGTGGCGTGGGATGCCATGCTTCGCTCTGATGATCTGGAGCCCGAG
TCGCCCAACATGTGGGCGGAGCTGGCGGAGGCCATGCTGTTGGCCCCGCCTGTCTGGGAGGGCAGCGCGGTGGACAATGA
CGAGTGGTCCCAAGGCTCGCTCTGGGACCCGTCTTGCTGGAGCTACTGATCGCACAACTTTTGGTTCGTAGAGGTCGAAA
TTAATCAAAATTTTCCGAAAGACAACAGAAAATTTAGGGATTCCATCGAGCTTAATTTCCGAACAAATTTAAGTATCGGT
AGCTTAAGGGGATTCTTATGATATTTTGTCAGTATTGTGAGTGTGGCATTTCTTTGTACTACAGCACGTGCGCGTGGAAT
TCAGTTGGACACAATAATTAAGTTCCACTGAGAATCAAACCTCCTTTCTAATTACTGGCGCAATCAAATAAATTTGAATT
CCAATATACATCTGGCGTTCCCTCGGGAAGGTAAGTTGAGAGAACAATCATTCCCCAAATAGAGAGGATCGAACCGTTCG
TT----------AAAAAACTCACTCCCAGTGAACCCTCCAGAATTGTTATGCGAAAATAGATAAAATTATTGTG-TTGTT
GTAAAGGATTTGCCTAAAGTAAAATTTGACATGTTGTATACAAAAATTGTCAGAAAATTGTCATGCTACAACAAAGCTTT
TCCATGGGTCTTGGGGAAACCGTCATAATTGAAGCATGGAGATTGACCAGCCTAAATAAAAGAAATGATGAAAATTGCCA
CGCTCTAGATTTGTCGTCTAGCTACATCAACGAAAG-AAATATGAGAATTACCATGTTGTACAAAGATAAATTGA-----
---AATGTGTTCGCTCATACAGTCATCCTGAGCGAACTCAAATATTGTCGTTATCACGTTGTTCGCTTAGAGGGTGCACG
GGATTTGGCGGCGCATAGGATATTCGTGCGGAAAACCTATAAAACTAGCGTCAGTTGTA-CAGCATTAGAGATAAATTTT
GCTGCCATGAGAATTTGCAGGATTAACTGAAAATCAAACCTCGTTTCCGTTGTTTCAGAATCATTTGAATTAAGATAGGA
-TTCCATGGAAGTTTGTGACGCGCGAGGAAATTTCCGTAGAATGACGATG-CAGATATACTACCGCGACAAGATGGTACG
CGTTATCCCACTGTTTCGTCCTCGC
>chr4D_3
--CCATGTCGTGAGAATGGATATGTGCCGACGCCGAGCATAGACTAGTTTTACCTTAGTCCAGTATAGCTTTTAGTTAAA
AAGTCTCCAGAATGTAACGAATGTCGTCTGGTTTGGGTTTGTATGAAATCCTTTGTGTTTGCATGAA-TTTGTCCGGTTA
GTTCAAAAAGTTGTTGAAATGTATGTGGATAGTGTTGGATGGCGGCCTCCGGCATGAGTGTCTGCGGACTGGCCCACCCT
GTCCGCGGACGGATGCGGGTGGAAATTTGCAGGTTGGCGTTGGAGATGCCCTTAGCTTCTACCCACAATATTTGCTTTCA
TAAAAGTTGAAACTAGCCACTTTGTAGTTCCATATATCCTTTTCCATATAT---------------------CAAAATTC
GTGGTTGAGCTATTGGCATGCACACAACATTGATGTTGTAATAGTACATATGAAGATAAAAGAAGTCACAAAGCCAAGCC
ATTGAAGCGTGATAATAAGCACATGCATAGTGCATCACATCATAACTAACTCCAAAACCATTGCACTGTCCAGGAAGCTC
CCTCCCACAAAGCAAACCAACATCTCCTAATCCTGCTGCCGGTGGATAATGCATCATCGCGGTTTCTCTCTCTTTTTATA
TCCCAACACACCCGTATGGCCATTTATATTTTTTACAAAGAAAAACAGGGAAGCGACACGTATCAGCCTCCAGCTGTCTC
CACCCAGCTCAAACACCACCCCCCG-----------CCCCATGCATGCACCCATGCACTTCAAGTTTTCAACACACCT-T
TCTTCTCTCTCATCTTCACTCCCGCACACCTCACCATCTCTGCATCTCTCTTTCTAGTCGATCTCTGCCCTTTCTA----
-TCCCTATATATACCCACACGCACGCCTCCAATCCAACACCAACTTAGAGCTTACACTGCGACACTCCTGCAGCAAAGAA
CTTCTTGTACTTACACAGGCGCATCACATAGCTTCGATCGTCATTGCTGCGATGGAGGTCGTGCCCGACAATGCCGCCGG
CGTTGCGGCGGCCGAGCAGTACCGTGGGGTGAGGAAGAGGAAGTGGGGTAAGTGGGTGTCCGAGATCAGGGAGCCCGGCA
AGAAGACGCGCATCTGGCTTGGCAGCTTCGAGTCCCCGGAGATGGCCGCCGTGGCGCACGACGTGGCCGCGCTCCGGCTA
CGGGGGCACGAGGCCAGACTCAACTTCCCGGGCCTCGCCCACCTCTTCCGCCGGCCGGACACTGCCGAGCCTGACGACGT
CCGTGCGGCTGCGCTGGAGGCCGCGGCCCAGGTCCGGTTCAGGCCCGACCTCGTGCTACAGCCGGGCGGCTGTGGCAGCA
GCGGCGGCGGCGGCTTCCCGGACCGGCTCGATGACGTGGCGTGGAATGCCCTGCTTCGCTCTGATGATCTGGAGCCCGAG
TCGCCCAACATGTGGGCGGAGCTGGCGGAGGCCATGCTGTTGGCCCCACCTGTCTGGGAGGGCAGCGCGGTGGACAATGA
CGAGTGGTCCCAAGGCTCGCTCTGGGACCCATCTTGCTGGAGCTACTGATCGCACAACTTTTGGTTCGTAGAGGTCGAAA
TTAATCAAAATTTTCCAAAAGACAACGGAAAATTTAGGGATTCCATCAAGCTTAATTTCCGAACAAATTTAAGTATCGGT
AGCTTAAG-GGATTCTTATGATATTTTGTCAGTATTGTGAGTGTGGCATTTCTTTGTACTACAGAACGTGCGCGTGGAAT
TCAGTTGGACACAATAATTAAGTTCCACTGAGAATCGAACCTCCTTTCTAGTTACTGGTTCAATCAAATAAATTTGAATT
CCAATATACATCTAGCGTTCCCTCGGGAAGGTAACCCGAGAGAACAATCATTCCCCAAATAGAGAGGATCGAACGAACGC
AAAA--------AAAAAAATCATTCCCACCGAACCCTCCAGAATTGTTATGCGGAAATAGATAAAATAATTGTGTTTGTT
GTAAAGGATTTGCCTAATGTAAAATTTGACATGTTGTATACAAAGATTGTCAGAAAATCGTCATGCCAGAACAGAGCTTT
TCCGTGGG-TTTGGGGAAACCGTCATGATTGAAGCATGGAGATTTGCCAGCCC-AAAAAAAGAAATGATGAAAATTGCCA
TGATCAAAATTTGTCGTCTTGCTACATCAAGGAAAG-AAATGTGAGAATTGGCATGTTGTACAAAGATAAATTGGTATTC
CCGAATGTGTTCGCTC---------------------TCAAATACTGCCGTTACCACGTTGTTTGCCTAGAGGGTGCACG
GGATCTGGCGGCGCATAGGGTATTTGTGCGGAAAACCTATAAAACTAACGTCAGTTGTA-TAGCATTTGAGATAAATTTT
GCTGCCATGAGAATTTGTAGGATTAACTCAAAATCAAACCTCGTTTCCGTTGTTTCAGAATCATTTGAATTAAGATAGTA
TTTCCATGGAACTTTGTGACGCGGGAGGAAATTTCCGTAGAATGACGATGCCAGATATACTACCGCGACAAGATGGAACG
CGTTATCCCACTGTTTCGTCCTCGC
>SNPs
SS--S---S-----------------------------S---------------------S-------------------
-----------------------------------------------S--------S---S-------------------
------------S--------------S-----------------------S-----------------------S----
----------------------------S-------------S--------------------S-S-S------------
----------S------------S----S-------------------S-------------S-------SS--------
---------------------------------------------------S----------------------------
----------------------------------------------S---------------------------------
-----------------------------------------------------S---------S-----------S----
---------------------------------------------------S--------------S-------------
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----------------------------------------------------------------------------SSSS
S------------------------------------------------------S---------------------S--
--------S-----------------------------------------------------------------------
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--------------------------------------------------------S--------------S--------
---------S----------------------------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------------------------------------S--------
-----------------------------------------------------------S-----------------S--
----------S---------------------------------------------------------------------
-----------------------S---------------------------------------S----------------
-------------------------------------------------------------------------S------
S----------------------S--S------------------------------S-S---S------S-------SS
--SSSSSSSSSS--S---------S-------------S--------S----S---------------S-----------
----------------------------S-------------------------------S---------S-----S-S-
---------------S---S-------------S---------------SSSS---------------S-----------
----------------------S------------SS-------S-----------S--------S-----S---S----
-------------------SS-------SS------S-----------S-------S-----------------------
-----------S-----------------S-----------------------S-----S--------------------
----S----------------------------S-----------------------------------------S----
------------S-------------------------------------------------------------------
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>forward_283
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-----------------------AATTTACGGGTCGGCGTTGA-------------------------------------
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>reverse_1512
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-----------------------------------------------------------------------CGACAATGA
CGAGTGGTCCC---------------------------------------------------------------------
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>forward_707
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-----------------------------------------------GGGAGGCGACACGTATCAGA-------------
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>reverse_1580
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-----------------------------------------------------------CTTGGTTCGTAGAGGTCGGA-
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