>input_sequence_75997
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----------ATGCCAAACAAAGTCTACTCGATCGACATGAGTCCGTCGCTTCCTGTACTCCTCCCGCTCCTACTCGCCA
CCTTCTTTGCCATCGCCCATGCCGAAGCCGACACGGCCGCCGTGCCGTTACCAAGCCTAGCTACGTATCCGACGCCGGCT
TGGACACCCGTGTCCCCACCGCCACCTTCTACACCGGAGTGGTCGCCAGTGTCCA-------------------------
--------CGCCTCCACCTCCGCCACCGGCGTGGACGCCCGTGTCCTCCCCACCACCTCCACTGCAGGC-----------
-GTCCCCGCCACCACCTCCACCGCCGGCGTGGACGCCCGTGGCGGACGTGAACGTTCAGTCGATCAAGCAGGTCGGGCAG
TTCGCCGTCCGCATCCACGCCCTCCATGTGGAGGTAGACCTGGTGTTCGTGAAAGTCGTCAGCTGCCGGACCCAGCCGTC
GAGCGACGGGTTCATCTACCAGCTGGTGGTCGCCGTGACGGGCTCCGGCGCCGAGTCGCCGCAGTACGACGCGGTCGTGT
GGGGCATCCTTGGGACAATGCGCTGGGAGCTCCGGTCCTTCAAGCCAAAGTAA---------------------------
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>chr4A_1_TraesCS4A01G015300
TCACAGACTTTGTCTTCGACCAATGTTACTTACTTAGCTGTCATGCGATGCCATGGG-----CTCATGGCCACGTACGTT
CGTGATGGCTTCCTCGAAATCAAAATTGAAAAG---AAAACCTGCGTACGTGCCTCCCTACTCGTGTGAATCGTGCTTAA
CTTCAAGCGGAGCACCGCCGTGTCTAATGCCAAAGTCAATGATCTTAATTACCTACTACGTGGCCTCAGTTGTAACACCG
AGATCCAATGT---------------------------------------------------------------------
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--------------------TCACTGCAACCGACGGTGAGAAACTTAGGACAAGTAGTGTTCTGCCC--CCGGCCGGCCT
TGATAGTGGAGCCGACTTGCTTGGACATGACAGCCAAGCTCAATCTAGGACTAGCCTTGCCCAAGTTTGTGAGAACCAAT
GTACACTTGTACTAACTT-ACCACTCTCCAGCTAAGTTGATGGCCACCTTGCAGCTCT----TTTTTTTATCATGGCGAT
GCATATAT-------------------ATGTGCGCGTGGTGGCATATGGGGTAATGCATTTCTCGCAAAATATTGGTCGC
TGACCTGACTGAGCAGAGCAGAGCAGGTCAATCGCCTCGATCCCACCTCCGCGGTTCAGCCCGGCCGTAGACTATCGCGC
GCAGTGCATGGGGCTTCTCGTTGTA---------TGCATGTCGATTGATCAACCGCGTTTGT------------------
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-------------------------------------------------CTTACTTCCAGCTGGCGCTGTACGTTTATCA
AAAACTCCCCAATTGCAGAGATGC----------ATCAGAGATCGATGTCCAAAAGCTAATTATTAAGTTTGTAACG---
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-------------------------------------------------------------------------AAAAGAA
CTTACCACTTGATCAGCCAGAGACACTCG-AAGTCCACGTGTTCACTCATTGGTATTCGTATACATAGAGTACGTAGTAC
G----TTCTAGCTAGCCATTTTGTGAAAACGTACGTAGCCCCATGCTATAAATGGGGCACAAGTGAAGTGATCTTTCCAA
CTCCAGCACGTCCCGTTCTAGCCCCTCTTTTCTAGCTCGAGCTACGGTAGGAGCTGTAGGCAGCCGGTGTGCATCCACAC
GGCCGTAACGATGCCAAACAAAGTCTACTCGATCGACATGAGTCCGTCGCTTCCTGTACTCCTCCCGCTCCTACTCGCCA
CCTTCTTTGCCATCGCCCATGCCGAAGCCGACACGGCCGCCGTGCCGTTACCAAGCCTAGCTACGTATCCGACGCCGGCT
TGGACACCCGTGTCCCCACCGCCACCTTCTACACCGGAGTGGTCGCCAGTGTCCA-------------------------
--------CGCCTCCACCTCCGCCACCGGCGTGGACGCCCGTGTCCTCCCCACCACCTCCACTGCAGGC-----------
-GTCCCCGCCACCACCTCCACCGCCGGCGTGGACGCCCGTGGCGGACGTGAACGTTCAGTCGATCAAGCAGGTCGGGCAG
TTCGCCGTCCGCATCCACGCCCTCCATGTGGAGGTAGACCTGGTGTTCGTGAAAGTCGTCAGCTGCCGGACCCAGCCGTC
GAGCGACGGGTTCATCTACCAGCTGGTGGTCGCCGTGACGGGCTCCGGCGCCGAGTCGCCGCAGTACGACGCGGTCGTGT
GGGGCATCCTTGGGACAATGCGCTGGGAGCTCCGGTCCTTCAAGCCAAAGTAAGGCTCGAGGATATATCGTGCACTCGTG
------CGTACATGCATCGGTGCATGAATGTGCGGCTGGGGTGTCCTAGGGTGCACCCTGTTTCTTTCGTGATTTGCATC
AGAATGTTTGGAGAATTTGAGTGTAACTGATCAATTGTTGTTTGGTTGTTCGTGTTTAGTCCTCAGTTTATCCATACTCA
ACTCACCCGTTGCACCATCTACCAGGCTTCCGAGAGTTAACTCAATCGTGTCTGTTTTACGACTCTTCTGCTTC---TGT
GTTTTTTCTCATTTTGTCACCTTGTGGTGTGGGTGCTTCTCTTTTGAGTATAATAAAGCTATATTCTCAACATGTGAGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAACCCTGCCCCGTCCCCCGCGGGCGA-CCGGGTGGCGACGC
CACCCCCTACCACGGCTCTCCTCCGCCACTTCCTCACCTGTCGCCGCCGCCAGCGGT---CATATCTGCCAGAGCATATA
TGTAGCATCCCGGGATCGACGCAATATGGATCTAGCCATCTCCACTAGCCTCTGGATAGATT-GATCCCAAGAACACTAA
AGCTTCACACAACTAACATGCCAAAACGTGTCTGTCATGTGGAACAATTGATATCACAACACATA--ACAAAACATAATC
TGTGTGGGAGGCCTTCATGGTCGGTGAGGGAGCGGTTCCTCAATAATCGTGTTGCTCCGTCCTCACATGATTCTCCCCCT
ATTGTGCCAGTCCTATCCTGATTTGGGTC
>chr4B_1
TCACAGACTTTGTCTTCGACCAATGTTACTTACTTAGCTGTCATGCCATGCCATGGG-----CTCATGGCCACGTACGTT
CGTGATGGCTTCCTCGATATGA------AAATTGAAAAAACCTGCGTACGTGCCTCCCTACTCGTGTGAATCGTGCTTAG
CTTCAAGTGGAGCACCGCCGCGTCTAACGCCAAAGTCAATGATC----TTACCTACTACGTGGCCTCAGTTATAACACCG
AGATCCATTGT---------------------------------------------------------------------
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--------------------TCACTGCAACCGACGGTGAGAAACTTAGGACGAGTAGTGTTCTG-CC--CCGGCCGGCCT
TGATAGTGGAGACGACTTGCTTGGACAGGACATCCAAGCTCTATCTAG------CCTTGCCCAAGTTTCTGAGAGCCAAT
GTACACTTGTACTAACTTAACCACGCTCCGGCTAAGTTGCTGGCCACCTTGCAGTTCCTTCCTTTTTTTATCATGGCGGT
GCATAATACCCAAGTGGAGTATATGTGATGTGCGCGTGGTGGCATATGGGGTAGTGCATTTCTCGCAAAATATTGGTCGC
TGACCTGACTGAGCAGAGCGGAGCAGGTCAATCGCCTCGATCCCACCTCTGCAGTTCAGCCCGGCCGTAGACTATCGCGC
GCAGTGCATGGGGCTTCTCGTTGTA---------TGCATGTCGATTGATCAACCGCGTTTGTCTTACTCAAGGTTTTGGT
TACCGAATGAGGTAATTTTACCGAGGGGGACTGATAAATGTGGTTACCACGGTTACCGAGAAATACCGACAAATTCCGAG
AATATTTCGAGCGAATTTTATAGTTGAATTTTGAATTCAAATAAGAAAATGAACGAATATTCAAACCAGAGACCTCTCAA
AACAGGAACTAGGTTGCTACCAACATGCCATATCCAACTTTCATTGCATTAATTAGACCCTACATACCTTACTGTAAATC
GAGTGTTTAAATTCAAAAATTTCAAAAAATTGATATTTTTTGCTCGGTATGACGATTTACCGAGGGGCACGGAAATACGT
GGTAACCATGGGAAATCTTGAAATTTCGACTGGTAACCAAAACCTTGGTCTTACTTCCAGCTGGCGCTGTACGTTTCTCA
AAAACTCCCCAGTTGCAGAGATAG----------ATCAGAGATCGATGCCCAAAAGCTAATT------------------
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---ACTCCTTGATCAGCCAGAGACGCTCG-AAGTCCTCGTGTTCACTCACTGGTATTCGTACGTG--GAGTACGTAGTAC
G----TTCTAGCTAGCCATTTTGTGAAAACGTACGTAGCCCCATGCTATAAATGGGGCACAAGTGAAGTGATCTTTCCAA
CTCCAGCACGTCCCATTCTAGGCCTTTTTTCTGTCTCGAG--TACGGTACGCGCTCTAGCCAGCCAGTGTGCATCCACAC
TGCCGTAGCCGTGCCAAACAGAGTATACTCGATGGACATGAGGCCGTCACTCCATGTACTCCTCCCGCTCCTACTCGCCA
CCTTCATTGCCATCGCCCATGCCGAAACCGACACGGCCGCCGTGCCGTCACCAAGCCTAGCTACGTATCCGACGCCGGCT
TGGACACCCGTGTTCCCACCGCCACCTCCAACACCGGAGTGGTCGTCAGTGTCCACGCCGCCGCCACCGGCGTTGACGCC
CCTGTCCCCGCCGCCACCTCCACCACCGGCGTGGACGCCCGTGTCCTCCCCGCCACCTCCACCGCAGGC-----------
-GTCCCCGCCACCACCTCCACCGCCGGCGTGGACGCCCGTGGCAAACGTGAACGTTCAGTCGATCAAGCAGGTCGGGCAG
TTCGCCGTCCGCATCCACGCCCTCCATGTGGAGGTAGACCTGGTCTTCGTGAAAGTCGTCAGCTGCCGGACCCAGCCGTC
GAGCGACGGGTTCATCTACCAGCTGGTGGTCGCCGTGACGGGCTCCGGCGCCGAGTCGCCGCAGTACGACGCGGTCGTGT
GGGGCATCCTTGGGACAATGCGCTGGGAGCTCCGGTCCTTCAAGCCAAAGTAAGGCTCGACGATATATCGTGCACTCGTG
GGACTGCGTACATGCATCGGTGCATGAATGTGCGGCTGGGGTGTCCTGC-GTGCAGCCTGTTTCTTTCGTGATTTGCATC
AGAATATTTGGAGAATTTGAGTGTAACTGATCAATTGTTGTTTTGTTGTTTCTATCTGGTCCTCAGTTTATCCATACTCA
ACTCATCCATTGCACCATCTATCATGCTTCCGAGAGTTAACTCAATCGTGCCTGTTTTACAACTCTTCTGCTTC---TGT
GTTATT-CTCATTTTGTCACCTTGTGGTATGGGTGCTTCTCTTTTGAGT---ATGAAGCTATAATCTCAACATNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------CCTTGCCCCATCCCCCGCGGGCGACCCGGGTGGCGGCGC
CACCCCCTACCACGGCTCTCCTCAGCCACTTCCTCACCTGCCGCCGCCGCCGCCAGTGGCCATATCTGCCAGAGCAAAGC
TGTAGCACCCCGGGATCGACACAATGTGGATCTAACCATATCCACTAGCCTCTACATAGAATCGATCCCAGGAACACTAA
AGCTTCACAGAACTAACATGCCAAAACGTGTCTGTCATGCGGAACAATTGATATCACAACACAGATGACAAAACACGATC
TGCGTGGGAGGCCTTCATGATTAGTGAGGGAGTGGTTCCTCGATAATGGTGATGCTCCGTCCTCACATGATTCTCCCCCT
ATTGTGACAGTCCTATTCCGATTTGGGTC
>chr4D_8
-------CTTTGTGTTCGACCAATGTTACTG----AGCTCTCATGCGATGCCATGGGCTCATCTCATGGCCACGTACGTT
CGTGATGGCTTCCTCGGAATGA------AAAAG---AAAACCTGCGTACGTGCCTCCCTACTCGTGCGAATCGTGCTTAA
CTTCAAGTGGAGCACCGCCGTGTCTAATGTCAAAGTCAATGATCTTACCAG-------CGTGGCCTCAGTTGTAACACCG
TAATCCATTGTTCAGAGCAACTCCAACGCAGGGACCCAAACGGACACAGATTTTGTTTCTTTTTTGTCCGTTTGGGTCTC
CTGTCCGCCAAGCGGACGTGGGGCGGACATTGCGGGTATCCAACGGGAGAGCACAAAAGCGGACAGAGCGGACAGGGAGC
AGCGAGGCAAGCTGGGGCGAACGGCGAGGCGAGCTGGGGCGAGCTGCAGGGCGTCCACTCCAGCCGCCGCCGTGCCTCCG
CTTCCCCTCGCGGCGGTGACGGCTTCCACCAGGCGCTCTTCGCTGTGGTGCTCGACGGCGTTGCCGTGGACGCGGCGCGT
CAGGCGGGACGGGCTGGCCTCCGCGCGCCGCCAGGCCTCTCCACTCCAACGACCGGCCGATGTGCCTCTTCGCTTCCCCT
CGCGGCCGCCGGGCCCCTCCGCACGCCGCCCGTCCGCTTCCCCTCGCGGCCGCCGGGCCCCTCTCCGCGCCGTCCGTCCG
CTCCCCATCGCGCCGCCGGGCCTCTCCAGCCGGAATCGGCCGACGTAGCGGAGGCAACAGAGGGGATCGAGAGAGAAAGT
TGTACGAGAGATGCGTGCTAGCGCAGCTGTGTGCGGTCGCTAGTAGGTAGGACCAGGGCGGACACGAGCGGGCGGTAGCG
AGCAACGAGAGCGTCCGCTTCTGTCCGCTTCGTACCCATTTATTCCCAGATTTGGGTCAAGTTTGGGTCGGAAATGGACA
GCAGGCGGACACGGACGTCCATTTGGGTCGCCCAGTTGGGCCAAGTTTTACGTCCGGATGACCAAAACGGACAAAATGGG
TCGGCCCCTTGAAGTTGCTCTCACTGCAACCGACGGTGAGAAACTGAGGACGAGTAGTAGTTCTGCCGACCGGCCGGCCT
TGATAGAGGAGACGACTTTTTTGGACAG-----CCAAGCTCGATCCAGTCT-----TTTCCCATGTTTGCGAGAATCAAT
GTACACTTGTACTCCTAACTTTACACTTGTA-------------CACCTTGCAGTGTGTATATATGGGCAAG--------
----------------------------TGTGCGCGTGGTGGCATATGGTATAGTGCATTTCTCGCAAAATATTGGTTGC
GGACCTGACTG---AGTGCAGAGCAGGTCAATCGTCTCGATCCCAGCTCTGTA---CAGCTCGGCCGTGGACTAT-----
--AGTGCATGGGGCTTCTCGTTGTAAGTTGTTGATGCATGTCGATCCATCAACCGCGTTT--------------------
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-----------------------------------------------GTCTTACTTCCAGCTGGCGCTGTACGTTTATG-
--AACTCCCCAGTTGCAGAGAGAGAGAGAGAGATATCAGAGATCGATGTCCAAAAGCTAATTGTTAAGTTTGTAACAAAA
GAAGAGTTAAATACACTACAGGTGCCCTAACTTATCCGGTGCGGTCAGTTTGGTGCCTAAACTTGAAAAATACACAAAAG
TGATGTCGTAACTTGTCTGGGCGTTCAAATACGGTGCCTCTGGACGTATGCCGCCGTATCGAGTGCCCGCTGGCATTCTA
GTCTGTCGCTAGGCCACATGTCAGCGGTTGCCTACACACGTTGTGAGCTATGCATGTTGTTTTTTTACAGGAATGCTCCT
AGATTTTATTAATTTTCGCAAAAAATACCCCTTGATTTTAATTTTTTTTTGCGGGAGTCAGCGTACAGGGACTTCGAACA
TGGGATATGTCGTTGCCGACCAGGCGGCCACGGTCTGGTTTTGCGCGTAATTATCAGCAAGCAATTTATATAGATGATTG
CACGTATCGCTCTGCATATGCTTCTACTGGAGTAATTTTCTTTATATTTATTCCAAGTTACTATCTTGTCTTTCTTCGAG
TGATGTTTCTGTTTAGTTTTCATGATACATAAATTTTTTCATGTGAAAAAATAAAATAATTATCAATATATAATTTTGTT
TATTTGTATCTCTATTCTATTTCCATTATAGTGTACTTTCAAGAGATAAACACGAAATTTTTCTAAAATTGATGTGCAAT
TAAAGAGTTGAACGTTTAAAAACATGGTGAGCATATTTTGAAAGACACGTTCACGTTCTTGTTCATTTTTCATTTTAATA
TTATTTTAGAAAATGTTCACCTTGTTTTCTGAAAATGTTGAATGTGTATTAAAAATATTGTGTAATATTATTCTTAAATT
TCTACAAACACGCTCATGTTAGTACATTTCTGGAATTTATTATTGTCACACAATAATATTTAATACACGTTGAACAGTTT
TTAAAATACAATATTGTCAATTTTCAATAATTGTGTACTTTAAAAATAGAATGAAGATACACAATAATTGTTCGTGCTTA
TGGCCCTCAATGAAGATGCATAAATTTACACAATAATTTTTAATATACGTTCAACTTTTTATGTCCACATAAATTTTAGA
AAAAATTCATGTTTATCTCTTCAAGGTACACAATAATGAAAATAGAGTAAAGATATAAAATAAACAATAATTACAGATTG
ATAATTATTTTATTTTTCATATAGGAAAATTTATGTATCATGAAAATTAAACAGAAACTTCACTCAAAAAATATGTGCAA
AGCGATACGCGGAATCGTGCATATAAGTTGCTAGCTAGCAGTTAAATGTAAACCAAAGTGTGGCCTCTTGGTCCACTTGT
TTGTTAGGCAACCAGGATGTCCGTGGTTTGAATTCTTTTCATGCCGGCTTGTGTTTATATTTTTGTGAGAATTAATTGAA
GTACAAACGCGTTTCCGTAAAAAAAAGCTTGCGTCCAGCATGCGTAACGATTTTTTCCAAGAATTAACTAAGTCCAGGGA
CATTTCTGTAAAAAAAACTACACGCACGGCTCACAACACGCCCGCAGCCACTGATATGTGGCCCAGAGACACGCTGACAT
GCCCCACGGGCACTTGATACGGCGGCATACGTCTAGAGGCACCGTATTTGAACGCCTAGACAAGTTACGTCACCACTTTT
GTGTATTTTTCAAGTTTAGGCATCAAACTGACCGCGCCGGCAAGTTAAGGCACCTGTAGTGTATTTAACTCCAAAAAGAA
CTTACCACTTGACCAGCCAGGGACACTTAAAAGTCCTCGTGTTCACTCGTTGGTACATA-----------TACGTAGTAC
GCTCCTTCTGGTTAGCCATTTTGTGAAAACGTGCGTAGGCCCATGCTATAAATAGGACACGAGTGAAGTGATCTTTCAAA
CTCCAGCACGTCCCGTTCTAGCCTCTCTTTTCTAGCTCAAGCTACGGCGCGCGCTCTAGCCAGCCAGTGTGTATC-----
------------------------CTACTCGATCGACATGAGGCCGCCGCTTCCTCTGCTCCTCCCGCTCCTACTCGCTA
CCTTCTTTGCCATCGCCCATGCCGAAACCGACACGGTCGCCGCGCCGTCACCAACCCTAGCTACGTAT------------
---------------CCACCTCCACCTCCA--------------------------------------------------
-------------------CCACCACCGGCGTGGACGCCCGTGTCCTCCCCACGATCTCCACCGCAGGCGTCCACGACCG
TGTCCCCGCCACCATCTCCACCGCCGGCGTGGACGCCCGTGGCGAACGTGAACGTTCAGTCGATCAAGCAGGTCGGGCAG
TTCGCCGTCCGCATCCACGCCCTCCATGTGGAGGTAGACCTGGTGTTCGTGGAAGTCGTCAGCTGCCGGACCCAGCCGTC
GAGCGACGGGTTCATCTACCAGCTGGTGGTCGCCGTGACGGGCTCCGGCGCCGAGTCGCCGCAGTACGACGCGGTCGTGT
GGGGCATCCTTGGGACAATGCGCTGGGAGCTCCGGTCCTTCAAGCCAAAGTAAGGCTCGAGGATATATCTATCGTGCACT
CA--TGCGTACATGCATCAGTGCATGAATGTGCGGCTGGGGTGTCCTCGGGTGCACCCTGTTTCTTTCGTGATTTGCATC
AGAATGTTTGGAGAATTTGGGTGTAACTGATCAATTGTTGTTTGGCTGTTCGTGTCTAGTCCTCATCTTATCCATACTCA
ACCCACCG---------TCTATCATGCTCGCGAGAGTTAACTCAATCGTGTCTGTTTTACAACTCTTTTTGTTTGTGTGT
GTTTTT-CTCATTTTGTCACTATGTGGGTG--------------------------------------------------
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>SNPs
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--------------------S-SSSSSS----------------------------------------------------
-------S---------------------------------------S--------------------------------
-------S------------------------------------------------------------------------
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---------------------------------------------------S------------S---------------
-----------S---------------S----S--------S------SSSSSS--------------------------
------------------------S----S---------S--------------S--S--------------------S-
-----SSS---------------------------------------------S--------------------------
-------------------------------------------------S--S---------------------------
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-----------S----------SS--------------------------------------S-------------S---
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------------------------------------S------------------------SSSSSS-------------
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--------------------------------------S----------S-S---S---S-----S--------------
S------S-SS---------S---------------------S-------------------------------------
--------------------------S---------------------S-------------------------------
-------------S-------------S-S---------------S----------------------------------
------------S--------S----------------------------------------S-----------------
--------------------------------------------S-----------------------------------
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-----------------------------------------------S--------------------------------
-------------------------------------------------------S------------------------
--------S------------S--S-----------------------------------S-------------------
------S---------------------S--------------------SSS--S--------S---------SSSSSS-
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------------------------------SSSSSSSSSSS--S------S-------------------------S---
-----------------------S----------------S----------SS-S---------------------S-SS
-------S------------S----S--------S----S-------------SS-----S---------S---------
---------S-----------------------------S-----------------------S-----------SS---
--S----------------S-SS---------S--------S-----S---S----------------------------
------S---------S-S----------
>forward_1334
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----------------------------------CGTGGTGGCATATGGGGTAA--------------------------
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>reverse_4729
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--------GTTGCACCATCTACCAGGCT----------------------------------------------------
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