>input_sequence_75985
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---------------------------------------------------------------------ATGGAAAAGCT
GCTCGCCGTAGTGTGTGTTTCAAGCCTTCTTCTAGCCGCTCTTGCGGACGATGCCTCCTCCCGATCTTCTCTTCAGTACC
CCTCCCTGGACAGTCTACAAGGTCGTGTTCTAGGTCGCAAAGGCCGAGAAGAGCCAGCACACCACCA---TTACCGGCGT
GAAGGCGAGCACGAGCAGCATCATGAGGTCAGTTCACATGTCTCCCCCCAAAAGCTTCAGAAACGCAAAAACAGGGTTTC
TCTTGTGCTTTGCGCAGAGACTCTGCGGCTGTTATTCAGCTGTGTGCCTGTCTCTGCACGAAGCACACACCATTTTCTGC
TCAGAAGAAAATTGTTTTGCTCAGAGGAAAATACATG--GCGATGAG---------------------GTGCACATGTGC
AGGTTGTACCTATGGGAGTGGAGAGTGCTGAAGAGAGGAAGAAGGCAGGCTGGAGGAACGAGGACGAGGACGCGGTTGCG
ACGGAAGGGTTGATCTCCAGCGCGGACTACAGCGGCGTGGCCATGCACGGCCACAGCTCCCTGCCGGCGCACAAAAAGCA
CCCCAAACCATAG-------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G528400
TTCAGTTCTATATTTAACTTCCTCCCAACACGGCCACACGAACTACCGAAAGAGTAGACATGTCACATGAAAGCTGCCGG
----GCACCAGCAAATGGCCAACCAGCTTGAGCCACACTATTGCACTGACAGCGTGCATGCATGCATGCACAGCATATTG
CGCATAGATGAT------GTATAGGCCCATTCCCTCAGACACGATACGTCCCACGACATGCTCAAGGTGAGGCGTGGGTC
GGTGATGGCCGTCCAGACAGCATCGGTCAATTTTGGA-TTTTTTGGGTGCGACTATTGGTGCTGGGTCCTCTCTGGTTTT
GTTGTCAGGTTTTAGCAGGGATCCCCACGAGAAAAAGAAGGCATACGGCAACAAGTAGCCAAATGTGGTGGTTCCCCATG
CCGGCCCCTACTACCAAATTATTGTTGTACACTCCACTGTTAGACATTTCCTCTCGCTCATGACTCCCAGGTTCAGTCAC
ATGTGATGTTATGGCTCACAGACTGAGATAATTAAGATCACATTATG---------------------------------
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-----------------------------------------------------------------------CTAACACAG
AGGGTTGAAAAGATTATACACGCTACACAAAGTAAATCTATATCAATATTATCAACCAAGATTAAGGGTCAATTGTTTTG
GACGATTCTCCCTCCCCAGCTTTTCCAAGAATCGACACTCTTTTTTTTTTTTACAATCCTATCTAGTTATGGTCCAAACA
ATTCTATCTAAAAAACGAAACAAGCTTTAACGAGTCGAGCCAGGCTTGACTTGG--------------------------
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------------------------------------------------------------------CTCAAATTCCAGC-
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----------------------------------------------CCTAATCCTTAGGGGCAAGGAAGACTTTTTGACT
GCCATCGACAATGTCATGCTGACTCCAAGCCGATTACGTGGTGACATTTTCGTTCTTCAAATGGGGCCTAA-TTTACAAA
TATGCCTAAGCCTAGGCGCCAGTATGCATTTTGCATC-----------ATGTGTACCTTAGCAAAGACACGGATGAGAGA
GCGTTCTACAAGAGCTTCCTCTTCTCGTCGCTCTCTCCATTATTGTCATCTGCCACAGGCACCACC---ATGGAAAAGCT
GCTCGCCGTAGTGTGTGTTTCAAGCCTTCTTCTAGCCGCTCTTGCGGACGATGCCTCCTCCCGATCTTCTCTTCAGTACC
CCTCCCTGGACAGTCTACAAGGTCGTGTTCTAGGTCGCAAAGGCCGAGAAGAGCCAGCACACCACCA---TTACCGGCGT
GAAGGCGAGCACGAGCAGCATCATGAGGTCAGTTCACATGTCTCCCCCCAAAAGCTTCAGAAACGCAAAAACAGGGTTTC
TCTTGTGCTTTGCGCAGAGACTCTGCGGCTGTTATTCAGCTGTGTGCCTGTCTCTGCACGAAGCACACACCATTTTCTGC
TCAGAAGAAAATTGTTTTGCTCAGAGGAAAATACATG--GCGATGAG---------------------GTGCACATGTGC
AGGTTGTACCTATGGGAGTGGAGAGTGCTGAAGAGAGGAAGAAGGCAGGCTGGAGGAACGAGGACGAGGACGCGGTTGCG
ACGGAAGGGTTGATCTCCAGCGCGGACTACAGCGGCGTGGCCATGCACGGCCACAGCTCCCTGCCGGCGCACAAAAAGCA
CCCCAAACCATAGGATAGGCCTCCGGCTC-----TTCATTTCGTGTGTAATCTTGTCCAGTTCAATGTCCTGCTCTTT--
--GTGCCTTTAGCAAAGTAG--TAGTAGTCCGGTTTTATGGAATTGGTGTATCTTGGGTTCCTCGCCGTCTTTGTAAAAG
ATGGC----CCACGATTTGATATGGATCTTCGTTAAAAAGAAAAATCGAGATACATAGTAGTCCAGTTTTTGGCCTTTGT
TGCTTGAGGCCGGGTGTG---------CATCGTGTTTATGTCCCCTTGATGCTTCATTTTGAGTTAGTAAAATTCACGCT
TTATCAAAAAATAACTTGTGCCTTTGTTGGTTCGCTGTATGGTAC-AGTCGCTGTTTGTCGGGGGTTGGCTCCGGCGGGC
GGCACTCGATGACGACGATGATCCGTGGGGTGCACCGTGCACCCAGCAGGTTCAACACCACCAAACGCGGAACGCACGGC
ACACGCACTCCACATACGGCGCTGTCGTGGCCACCCAGGGCAAAGCACGGTGAAGTGTGCACGGGTGGGGAACCTGGGAG
GCTCCCATGGGGACTAAGGGGCTGTTTGGATGGTGACCAACACTAGCCTTACCAAAAAATTGGTCACGCCCACGATATTT
GGCTAGCGTTTGGTCTGGTACCATTTTTGGCTCGCCATCGTCGACTTGGGCGCGCCCGCGTACCGTTTTCGCCAACTCGC
GGGCGAAACAGCGGCGCGGAAATCAGCCGCCAAAATATTGGCTGCCAAATCTGGCGCGAGCCAGCCACCGTGATATAAAA
GGCACGATTGATTTTTCCCCACCTGTTCGCCACTTTCCCCATCTCTCTTATCTCCACGCACAGAAGCGCTCTCGATCCAA
TCACCGGGCGGCCGCGTTCTGCGTCGGTGCCAGCTTCTCCGGCGGCCGGCGACCGGCGACGCTGCTCCACCTCTCGCCCT
CCTCTCCCAGTCAAGCTACGCTCCAAGGTCAGCCACTGAAATCCCCATCCAACACTACTCCGATCCCCTTTTCTATGG
>chr2A_1
TTCAGCTCTATATTTAACTTCCTCCCAACAC--------AATCTACCGAAAGGGTAGACATGCCACATGAAAGCTGCCGG
CAGGGCACCAGCAAATGGCCAAGCAGCTTGAGCCACACTATTGCGGTGACAGCATGCATGCATGCATGCACAGCATATTG
CGCCCTACACAGAGGATAGTATAGGCCCATTCCCTCAGACACGATACGTCCTACAACATGCTCAACGTGAGGCGTGGGTC
GGTGATGGCCGTCCAGACAGCATCGGTCAATTTTGGAATTTTTTGGGTGCGATTATTGGTGCTGGGTCCTCTCTGGTTTT
CTTGTCAGGTTTTATCAGG-ATCCCCACGAGAAAAAGAAGCCATACGGCAGCAAGTAGCCAAATGTGGTGGCTCCCCGTG
CCGGCCCCTACTACCAAATTATTG---TATACTCCACTATTG-------------------GACTCCCAGGTTCAGTCAC
ATGTGATGTTATGGCCCACACACTGAAATAATTAAGATCACATTATG---------------------------------
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-----------------------------------------------------------------------CTAACACAG
AAGGTTGGAAAGATTATACACGCTGCAAATAGTAAATCTATATCAATATTATCAAGCAAGATTA----------------
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>chr2D_1
TTCAGCTCTATATTTAACTTCCTCCCAACACGGCCACACAATCTACCGAAAGAGTGGACATGTCACATGAAAGCTGCCG-
---GGCACCAGCAAATGGCCAACCAGCTTGAGCCACACTATTGCACTGACA-----------------------------
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----------------------------------------------------------------GTGGTGGCTCCCCGTG
CCGGCCCCTACTACCAAATTATTG---TATACTCCACTATTGGACATTTCCTCTCGCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATAGCTAAGCTTTATTGACCATAGTCCATATGAAATGGTCTAAAAAAG
GATCAGGGAAGGATGAAACATACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGAGAGTTTAACAAGTAACTACATACGG
AGTAAAATGAGT----------------GAATCTACACTCTAAAATATGTCTATATGCATCCGTATGTGGTAGTCTATTT
GAAATCTCTAAAAAGACAAATATTTAGGAACGGAGGGAGTAGATGTCACCCCTGATCAAAAGTGTTTGAAAACATAGCTA
GCCTATCTGCATCAGCGTTTGATGCTCGAGCTTCAAAAGTAAACTTACAATTAAGTATCATACCTTCCATTTTTCTAAGT
TATTCTTCCCACCAATTTTCTTGTATAAATATTCATGGATAACTACTGCTCCATCTGCAACTCCACCGCACTATGTACCA
CATGTGACTTCTCAATGTTGAAAGATGTGTATTCTCACCCAGAGGTGATCATACAATATTTTGCATTCCCTCACCCGTAG
GTGGTCAGGGCAATGTTTTCCTCCCCTCCAAGCTCCACCGATTAGACCATAGATTCGCCCCCCCCCCCCTACCCTGCCGC
TCTGGCGGCTGGTGGCGGGTAGGGGAATCGTGGTGCCTCGGTTCTAGCTAGTAGTTTATGTTAGGGGTTTTTAGTCCTCG
CGGGAGCGGTGCTCAAACATATGCTGGTGATTCATCTTCGAGTTGGTATTACAAGCTTCGGTCCTCCTCAAATTCGTGCA
TCGAGACAAAGTCCACAGATATCTGGCATAGATTCCTTTTTGTCTCCTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGATTAGGGTTTCTTGTTGTACGTGCGCAAAAGACGAGAGATGTTTGAGGCACTTTAGATCAATT
CAAGAGTTCAACAACTACAACTATGGTTCCAAGGCAAGGCGTTGATCCTATTCCTTAGGGGCAAGGAAGACTTTTTGACC
GTCATCCACAATGTCATGCCAGCTCCAAGCCGATTACGTGGTGACATTTTT-CCCTTCAAATGGGGCCTAAATTTGCAAA
TATGCGT-AGCCCAGGCGCCATCATGCATTTTGCGCAACCATCGCCCGATGTGTACCTAGT-AAAGACACGGATGGGAGA
GCGTTCTACAAGAGCTTCCTCA-----------TCTCCATTATTGTCATCTGCCATAGCCACCACA---ATGGAAAAGCT
GCTCACCGTAGTGTGTGTTTCAAGCCTTCTTCTAGCCACTCTTGCGGACGATGCCTCCTCCAGATCTTCTCTTCAGCACC
CCTCCCTGGACGGTCTACAAGGTCGTGTTCTAGGTCGCAAAGGCAGAGAAGAACCGGCACACCACCA---TTACCGGCGT
GAAGGCGAGCACGAGGAGCAGCATGAGGTCAGTACATC-TGCCCCCACCAAGAAATCCAGAAACCCAAAGACAGAGTTCC
TG-TGTGCTTTGAGCAGAGACTCTGCAGCTGTTATTCAGCTGTGTGCCTGTCTCTGCACGAAGCACACACCATTTTCTGT
TGAGAAGAAATTTGTTTTGTTCAGAAGAAAATGTACTTAGCACCATCAGAGTTTCTCTTGACGGCGAAGTGCACATGTGC
AGGTGGTGCCTATGGGAGCGGAGAGTGGCGAAGAGAGGAAGAAGGGAAGTTGGAGGAACGAGGACGAGGAGGCGGTTGCG
GCGGAAGGGCTGATCTCCAGCGCGGACTACAGCGGCGTGGCCATGCACGGCCACAGCTCCCCGCCGGCGCACAAAAAGCA
TCCCAGGCCATAGGCCTTCCGCCTCCGGATATTATTCAGTTGGTGTGTAATCTTGTCCAGTTCAGTTTCCTCTTCTTTTT
CGGTGCCTTTAGCAAGTACTCCTAGTAGTCCAGTTCTATGGAATTGGTGTATCCTGAT----------TCTCTGTAAAAG
ATACCAAGTCCACGATTTTATATGGATCTTCGTTGAAAAGAAAAATCGAGATACATAGTTGT----------GTCTTTGT
TGATTC--------------------------------------------------------------------------
------------------------------TTCGCTGCATGGTAGGAGTAGCTGTTTGTTGTGGGTTGGCTCCGGGCGGC
ACT------------CGATGATCCGTGGGGTGCACCGTGCACCCAGCAGTTTCAACACTAGC-AACGCAGAACGC-----
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>chr2A_721
CGAGCC--------------------------------------------------------------------------
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------------------------------------------GGCTTGACTCGG--------------------------
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------------------------------------------------------------------CTCAAATTCCAGC-
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----------------------------------------------CCTAATCCTTAGGGACAAGGAATACTTTTTGACT
GTTATCGACAATGTCATGCCGACTCCAAGCCGATTATGACA------TTTT-TTCTTCAAATGGGGCCTAG-TTTGAAAA
TATGCCTAAGCCGAGGTGCCATTATGCATTTTGTGCAACCCTCGCCGATGTGTGTCTG-GT-AAAGACACCGATGAGAGA
GCGTTCTACAAGAGCTTCCTC-----------CTCTCCATTATTGTCAGCTGCCACAGGCACCACCACCATGGAAAAGCT
GCTCACCGTAGTGTGTGTTTCAAGCCTTCTTCTAGCCACTCTCGCGGACGACGCCTCCTCCAGATCTTCTCTTCAGCACC
CCTCCCCGGACAGTCTACAAGGTCGTGTTCTAGGTCGCAGAGGCAGAGAGGAACCGGCACACCACCACCATTACCGGCGT
GAAGGCGACCACGAGGAGCAGCATGAGGTCAGTTCATTTTGCCCCCACCAAGAAATTCAGAGACCCCAAAACAGAGTTTC
CCGTGTAATTTGAGCAGAGACTCTGCAGCTGTTATTCAGCTGTGTACCTGTCTCTGAACGAAGCACGCACCATTTTCTGC
TCAGAAGAAATTTGTTTTGTTCAGAAGAAAATGTATG--GCACCATCAGAGTTTTTTGACGACGAA----GCACAAGTGC
AGGTTGTGCCTATGGGAGTGGAGAGTGTTGAAGAGAGGAGGAAGGCGGGCTGGAGGAACGAGGACGAGGAGGCGGTTGCG
ACGGAAGGGCTGATCTCCAGCGCGGACTACAGCGGCGTGGCCATGCACGGCCACAGCTCCCCGCCGGCGCACAAAAAGCA
CCCCAGGCCATAGGCCTTCCGCCTCCGGATATTATTCAGTTCGTGTGTAATCTTGTCCGGTTCAGTTTCCAGTTCTTT--
--GTGCCTTTAGCAAAGTA----AGTAGGCCGGTTTCACGGAATTGGGGTATCGGGAGCTCCTCGCCGTCTCTGTAAAAG
ATGCCAAGTCCACGATTTTATATGGATCTTCCTTAAAAAGAAAAATCGAGATACATAGTTGT----------GCCTTTGT
TGCTTGAGGCCGGGATGGGTGTGTACTCATTGTGCTTGTATCCCCTTGATGCTTCATTTCAAATTAATAAAATACACCCT
TTATCGGAAAATTACTTGTGCCTTTGT------------TGATTC-AGTAGCTGTTTGTTGGGGATTGGCTCCGGGCGGC
ACT------------CGATGATCCGTGGGGTGCACCGTGCACCCAGCAGGTTCAACACCACCAAACGCAGAACGCACGGC
ACAGGCACTCCACATACAT-----------------AGGGCAAAGCACGGTGAAGTGTGCACGGGTGGGAAACCTGGGAG
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>SNPs
-----S---------------------------------S-S--------------------------------------
-----------------------------------------------------S--------------------------
---SSSSSSS-S---------------------------------------S--S----------S--------------
----------------------------------------------------S---------------------------
S-------------S----S--------------------S---------S--------------------S-----S--
------------------------SSS--S--------S--S----------------SSS-------------------
---------------S----S-----S-----------------------------------------------------
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-S-----S----------------S--S-S-------------------------S---------S-SSSSSSSS-SSS-
SSSS-SSSSSSSSSSSSSSSSSSSSSSS-----S-------SSSS-S-S-S--S-SS-S-SSS--SS-SSSSSS-S-SSS
SSSS-S--------SSS---S-SSSSSS----SSSS---SSS---------S----------------------------
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-S-----------------S------------------------------SS-----------------------S----
------------S--------S------------SSS---------------------SSSS------------------
---------------------SSSSSSSSSSS------------------------------------------------
----S--------------------------------S-----------------------S--------------S---
--------------------------------------------S-------S--S------------------------
---------------S----S---------------SS-SS-S---S----S-SS---------S---------S-----
--S---------S-------------S-----------------------------------------------------
----------S--------S-----S------SS-------SSSSSS---------------------------------
-------S-------------------S------------------------------------------S---------
---------S---------------------------------------------------S------------------
-----SS-------SSSSS-SS-SSSSSS---------S-------------------------S-S-----S-------
-------------------S---------------------------------S--S-S------------S--------
---S--------------S----------------------------------------S--SSSSSSSSSS--------
--------------SSS-------------S---S--S-S-------------------SS-S---S------S---S--
-----SS-----S--------------SSS-------S-----------S---------S---------------SS---
SSSSSSSSSSSSSSS-----------------------------------------------------S-----------
---S-------------SSSSSSSSSSSSSSSSSSS---------------------------------S----------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_212
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--------------------------------CCTCAGACACGATACGTCCC----------------------------
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>reverse_3049
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--------ATGACGACGATGATCCGTGG----------------------------------------------------
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