>input_sequence_75983
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-------------------------------------------------ATGGCATCTTCTACTCTGAAACCAGGTGTGC
CTGTCACTCTGCAAGAGCTAGCGCCCTCCTCGGAGATGTTCAAGCAAGGGGCGTCCCTCCGGGTAACAGGAATGTATGTC
TGCCGGTTACTTTTATTTCTCCTCAAAACTACAAGTT----TTAACCGTGCTAGCCTTCTTGTCTTGCAATTCTCTAGCC
TTCAGTCATACGATGTGGACTCTGCGATTGCTGTCATTCGAGATGGCAGCGCGACGCTGAAGGTCGACGCCCAGCACCTG
CGGGACATCAGTTTCCGCAGCGGTTCTATGTTCCAGTTCATTGGTGAGCTCCTGATCCGGCCGAACGATGACGTAATTCT
CTGTCCTTCTCCAGCTTCTGTTAGTGAATTATATATAGCTGGTATCGTTGGAACAATGATGCTACATCGATCGAATCTGT
TGCTTACGGGCATCCTGCAGGCGATTCTGCAAGCACGT---------AACGTCGATGGCCTTGACCTGAACCTTTACCAG
CAGTCTCTCATCATCCGACGGCAGCATGAAGCCAGACTGCTGAGCTCCAGGAGCGCGTGA--------------------
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>chr1D_1_TraesCS1D01G442000
TGTTTAGATAAACAACATTCTTTATGCAAGTAGTGATGCTTTTTTATAATTTATTCATGTAGTGATGTTTTTGTTAATTT
ATTCAAGCAGTGATGTTCAAAGGGAATACAAAGGTACATTTCGTCCAAAATCTAACGTGGTGGTGGCTGGACAGTAGTGT
GATCGGTCGGTCACCAGCGGATGACTCGGCCTGTGCGTTTCCCTGGCAATTTGACGCCGTTAGCGTCATATAGGGATTTT
CGGTTTTCCAGTGCCAGTGCCAGTACCAGTACAACAAAAAGAAAAAAAGTACA------GTACCAGTACAGGTGCTCCTC
GTCTCCTCCCGTTTCCATCCGCCGCCGTTCGCCGGAATCTCTCCCCCGCCGCCGTCCTTCCA-CCCATCCTCCCCCAGGC
GATCTTCGCGTCTCCGACCCAATCCCTCCCTCCCTCCCGTCCA----CCAGTTTCCGTCCTCGTGCCTCGAGCGGCTGTA
CTGTTTGCGCGCATT-GGCGAGGCCGCCTCGCCGGCGACGCGCGGTGGAGGAGCAG------------------------
------GAGGCAATCTTTGCCAGGGCTGTGGATTTCATCAGGCAGCCCGTGCGCATTAGGGTACGTTGTTAGCGGTTTCT
GTCAGGTGCAAAAATAAGGATTGAGTCAAGTTTCAGAT-----TAGATCTCATGCCAGAATGTTGGAATCACTGTATGTA
CTGTAT---------GCGAATGGGATTGGAATTGCATGTTACTGATTTGAAGCCCTTCTTTGGTAGCTGATACATTTTGC
CTCCTTCCCCATAATTGAGATTACGAATTTACAATGCTA---GATCAGTATGCAGCAGTAGCATGCATATTGCAGTCTCA
TGTATCTGAACAGGTATAATGTTGAGTAGCAGGGTAAATGTTGATACAGTCAAACAGTATCAGTACCATAGTTGTATTAA
CTACCGGTGTACAATCTTGTAATGTTGAAG-CAGTATCAGTACTTTTCTTGATTGCGAAGACTGTCG-------------
-------CCTCATTTTGCCT-------GTTCCCCGTGTGCTAGC--TAGATGGCATCTTCTACTCTGAAACCAGGTGTGC
CTGTCACTCTGCAAGAGCTAGCGCCCTCCTCGGAGATGTTCAAGCAAGGGGCGTCCCTCCGGGTAACAGGAATGTATGTC
TGCCGGTTACTTTTATTTCTCCTCAAAACTACAAGTT----TTAACCGTGCTAGCCTTCTTGTCTTGCAATTCTCTAGCC
TTCAGTCATACGATGTGGACTCTGCGATTGCTGTCATTCGAGATGGCAGCGCGACGCTGAAGGTCGACGCCCAGCACCTG
CGGGACATCAGTTTCCGCAGCGGTTCTATGTTCCAGTTCATTGGTGAGCTCCTGATCCGGCCGAACGATGACGTAATTCT
CTGTCCTTCTCCAGCTTCTGTTAGTGAATTATATATAGCTGGTATCGTTGGAACAATGATGCTACATCGATCGAATCTGT
TGCTTACGGGCATCCTGCAGGCGATTCTGCAAGCACGT---------AACGTCGATGGCCTTGACCTGAACCTTTACCAG
CAGTCTCTCATCATCCGACGGCAGCATGAAGCCAGACTGCTGAGCTCCAGGAGCGCGTGATCCAAAGCTGTGAACCAT--
-TCTCGTGGCCTCAGTTCAGTTCCTCTGAAGTA-------CATGAGGGCAGAATCACCTGACCCGTGATGATCCTGTGCT
TCGGTTTGTTAGATGGGTGCAAGCCTGCAAAGTAGTTCTAGTAGTTGTTAACTGAATTTTCTTAGCATAGATTATTCCCC
TAGGCTATTTTTGCTATTCACAACTCCAGGAGCTCTTATTATCTCAGGGCTTACAGATCTCTTTCTGAACAATC------
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--GGAGTGTCCTTCCTGTATGAGATTACCTTCTCTTTTACATTTTGTGACAATAGATGCTCTGCAATTTGGTCCTGAATT
TTGTGAACAGAACAGCTACATTACGCCACTACATCACTTAAAAAAAATCTATCGTGCGTTGGCGAGTCAGGAACATCGGA
CTGATGAGGAGAGGACTATTGTGGCCCTGCGCTATGGCGGCTTCACCGACACGCCACGGCCAGTGCTCGAGGAAGGGGGA
AGAGCGGGCCCGGTCTGCGGCGTGGCCGAGGATTTACTGGGTCCTAGGGCTCCTCCGTCCTCCAGGACGACGGCGGCCCG
CCGGTTGGTATGCATGCATCAACCCTTCAGCCGATTGCAACTAGTTTTATTTACCCCCATCAGCAACTCTAGTCTGTAGA
TGCCTTGGTTTTGTTTGCAACTGGAAAACATTACATATGAACAGTCTACACCAGTACTCACTGGTGACCGGCACTTCATA
TGACGAAGCAACCATACAGCTCAGTTAAAAGTTTCTGAATTAAGCTTCTCAGAGAAGGCAAGATAGAATCTGTATCTGGA
GTTATATCTAACAAACCTTGTACGGTCTTTGATTTGGTTTTGTTTTGTTTGCAGCTGCAGGTGAGGAAAATAGTATGGTG
GA---CACAGTTCAAAATTCTGAATTGTGCTTCATTGACGAAGCCCATAAAGTTCAGGTCAGTTCAAAATTCTGAATTAT
GTTTCTCAAACAAGACAATAAAAAGCTAAAATTTGGATTTA
>chr1A_1
TGTTTAGATAAACAACATTCTTTATCCAAGTAGTGATG-TTTTTTATAACTTATTCAAGTAGTGATGTTTT--TTAATTT
ACTCAAGTAGTGATGTTCAAAGGGAATACAATGGTACATTTTGTCCAAAATCTAAC---GTGGTGGCTGGACAGTA--GT
GATCGGTCGGTCACCAGCGGATGACTGGGCCTGTGCGTTTCCCTGGCAATTTGACGCTGTTAGCGTCATATATGGGTTTT
CGGTTATCCAGTGCCAGTACCAGTTTATATAACC--------AAAAAAAAAAA------GTACCAGTAGTGGTGCTCCTC
GTCTCCTCCCGTTTCCATCCGCCGCCGTTCGCCGGAATCTCTCCCCCGCCGCCGTCCTCCCA-CCCATCCTCCCCCAGGC
TATCTTCGCGTCTCCGACCCAATCCCTCCCTCCCTCCCTCCCGCTCGCCAGTTTCCCTCCTCGTGCCTCGAGCGGCTGGA
CTGTTTGCGCGCATT-GGCGAGGCCGCCTCGCCGGCGACGCGCGGTGGAGGAGCAG------------------------
------CAGGCAATCTTTGCCAGGGCTTTAGATTTCATCAGGCAGCCCGTGCGCGTTAGG-TACGTTGTTAGCGGTTTCT
GTCAGGTGCAAAACTAGGGATCGAGTCAAGTTTCAGATTACTGTAGATCTCATTCCAGAATGTTGGAATG---------A
CTGTAT---------GGGATTGGGATTGGAATTGCATGT--CTGGTTTGAAGCCCTTCTTTGGCAGCTGA-------TGC
CTCCTTCCCCGTAATTGAGATTAT--------AATGCTA---GATCAGTATACAACAATAGTATGCATATTGCAGTCTCA
TGTATCTGAACAGATGCAATGTTGAGCAGCAGGGTAAATGTTGATACAGTCAAACAGTATCAGTGCCATAGTTGTATCAA
CTTCCAGTGTACAATCTTGTAATATTGAAA-CAGTATCAGTACTTTTCTTGATTGCGAAGACTATCACCGGAGACTAGAC
ATAACCCCCTCATTTTGCCTTTCATCAGTTCCCCGTGTGCTAGC--TAGATGGCATCTTCTACTCTGAAACCAGGTGTGC
CTGTCACTCTGCAAGAGCTGGAGCCCTCCTCGGAGATGTTCAAGCAAGGGGCGTCCCTCCGGGTAACAGGAATGTATGTC
TGCCAGTTACTTTGATTTCTCCTCAAAACTACAAGTT----TTAACCGTGCTAGCCTTCTTGTCTTGCAATTCTCCAGCC
TTCAGTCATACGATCTGGACTCTGCGGTCGCTGTTATTCAGGATGGCAGCGCAAGGTTGAAGATCGACACCCAACACCTG
AGGGACATCAGTTTTCGCAGCAGCTCTATGTTTCAGTTCATCGGCGAGCTCCTGATCCGGCCGAACAACGACGTAGCTCT
CTGTCCTTCTCCTGCTTTTGTCAGTGAATTATATATAGCTGGTATCATTGGAATAATGATGCTACATCG----AATCTGT
TGCTCACGGGCATCCTGCAGGCGATTCTGCAAGCACGTGTGGGAAGGAACGTTGATGGCCTTGACCTGAACCTTTACCGG
CAGTCTCTGATCGTCCGACGGCAACATGAAGCCAAACTACTGAGCTCCAGGAGGCCATAATCCAAAGCTGTGATCCAGCA
GTCTCATGCCCTCAATTCAGTTCCTCTGAGGTA-------CATGAGGGCAGAATCACCTGACCCGTGATGATCCTGTGCT
TTGGTTTGTTAGATGGGTGCAAGCCTGCAAAGTAGTACTAGTACTTGTTAACTGAAATTCCTGAGCACAGATTATTCCCG
TATCCTTGTTAAGCTAT-CACAACTCTGTAAGCACTTATTATCCGAGGGTCTACATATCTGTTTCACAACGTTTTGTGGG
CTGGCAAGTGCATTCCCTTTGCAGCAGAGGTGTTGTTTGACAGATGTAGCTGCAGGGTGATATCCTATCATTCTGAACAA
CTGGAGTGTTCTTCCTGTATGAGATCACCTTCTCTTTTACATTTTGTGACAATAGATGCTCTGCAATTTGGTCCTGAATT
TTCTGAACAGAACAGCTACACTACACCACTACATTACTTTAAAAATCTATACTGTA--TTGGCGAGTCAGGAACATCGCA
CTGATGAGGAGAGGACTATTGTTCGGGGAACAGG------------------------------------GGAAGGGGCA
AGAGCGGGGCCGGTCTGCGGCGTGGCCGAGGATTTACTGGGTCCTAGGGCTCCTCCGTCCTCCAGGATGACGGCGG----
-------------ATGCATCAACCCTTCAGCCGATTGCAACTAGTTTTATGTACTCCAATCAGTAACTCTAGTCTGTAGA
TGGCTTGGTTTTGTTTGCAACTGGAAAACATTACATATGAACAGTCTGCACCAGTACTCACTGGTGAACGGCACTTCATC
TGACGAAGCAACCATACAGCTCAGTAAAA-GTTTCTGAATTAAGCTTCTCAGAGAAGGCAAGATAGAATCTGAATTTGGA
GTTACATCTAACAAACCTTGTATGGTCTTTGATTTGGTTTTGTTTTGTTTGCAGCTGCAGGTGAGGAAAACGGTAAATAA
GGTGGCACAGTTAAAAATTCTGAATTATGCTTCATTGACGAAGCCGGTAAAGTTCAGGTCAGTTCAAAATTCCGAATTAT
GTTTCTCAAACAAGACAATACAAAGCTAAAATTTGGATTTA
>chr1B_140
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-----------------------------------------------------------GTGGTGGCTGGACAGTA--GT
GGTCGGTCGGTCACCAGAGGATGACTGGGCCTGTGCGTTTCCCTGGCAATTTGACGCCGTTAGCGTCATATAGAGATTTT
CGCTTTTCCAGTGCCAGTACCAG----TATAACA--------AAAAGAAGAAAAAAAAGGTACCAGTACAGGTGCTCCTC
GTCTCCTCCCGTTTCCATCCGCCGCCGTTCGCCGGAATCTCTCCCCCGCCGCCGTCCTTCCA-CCCATCCTCCCCCAGGC
GATCTTCGCGTCTCCGACCCGA-----------------------------------TCCTCGTGCCTCGAGCGGCCGGA
CTGTTTGCGCGCATT-GGCGAGGCCGCCTCGCCGGCGACGCGCGGTGGAGGAGCAGAGCAGGAGGGGGAAGGAGTAGGTC
AGCACAGAGGCAATCTTTGGCAGGGCCGTGGATTTCATCAGGCAGCCCGTGCGCATTAGG-TACGTTCTTAGCGGTTTCT
GTCAGGTGCAAAAATAAGGATCGAGTCAAGTTTCAGAT-----TAGATCTCATGCCAGAATGTTGGAGTC---------A
CTGTATGCACTGTATGGGAATGGGATTGGACTTGCATGT--CTGATTTGAAGCCCTTTTTGGG-AGCTGATACATTTTGC
CTCTTTCCCCGTAATTGAGATTAC--------AATGCTACTAGATCAGTATGCAGCAGTAGTATCCATATTGCAGTCTCA
TGTATCTGAACAGGTATAATGTTGAGCAGCAGGATAAATGTTGATACAATCAAACAGTATCAGTGCCATAGTTGTATTAA
CTACCAGTGTATAATCTGGTAATGTCGAAA-TAGTATCAGTACTTTTCTTGATTGCAAAGAATGTCACCGGAGACCAGAC
ATAACCCACTCATTTTGCCTTTCATCAGTTCCCCGTGTGCTAGGAGTAGATGGCAACTTCCACTCTGAAACCAGGTGTGC
CTGTCACTCTGCAAGAGCTAGCGCCCTCCTCGGAGATGTTCAAGCAAGGGGCGTCCCTCCGGGTAACAGGAATGTATGTC
TGCCTATTATTTTGCTTTCTCCTCAAAACTGCAACTT----TTAGCCTTGCTAACCTTCTTGGTTTGCTATTCTCTAGCC
TCCAGTCATATGACGTCGACTCTGCGGTCGCCGTTATTCAGGACGGCAGCGCAAGGTTGAGGATCGACACCCAACACCTG
AGGGACATAAGTTTTCGCAGCGGTTCTGCTTTCCAGTTCATCGGCGAGCTCCTGATTCGGCCAAACGACGACGTAATTCT
CTGTCCTTCTCCAGCTTTTGGCAGT-------------CTAATATCAGTCTATCAATGCTGCATCA-------AATTTGT
TGCTTA----CATCCTGCAGGTGATTTTGCAAGCACGTGTGGGCAGGAACGTCGATGGTCTTGACCTGAACCTTTACCAG
CAGTCTTTGATCATCCGGCGGCAGCATGAAGCCAAACTGTTGAGCTCCAGTAGGGTGTGATCCTAAGCTGTGGACT----
GGCTCATGGCCTTAGTTCAGTTCCTCTGTAGTATGGAGTTCAGGGGGACATAATCACCTTACTCGTGATGATCACGCGCT
TCAGTTTCTTAGATGGGTGCAAACCTGCAAAGTAGAACAAGTAGTTGTTAACTGAATTTTATGAGCACTGATTATTCTCC
TAGCCTTTTTATGCTA--CACAACTCCTGGAGCTCTTATTATCTGAGAGTCTACATATATCT------------------
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>chr1D_334
CGCCGGGTTGA---------------------------------------------------------------------
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--------------------------------CGGAATCTCTCCTCCGCCGCCGTCCTTCCATCCCATCCTCCCACAGGA
AAGCTGTGATTCTCCGCCCCAATTCCTCCCTCCCTCCAGC------------TTCCCGCCTCGTGTCTCGAGCGGCTGGA
CTGTTTGCGCGCAATCGGCGAGGCCGCCTCGCCGGCGACGCGCGATGGAGGAGCAG-----GAGGGGGAAGGAGTAGGTC
AGCACAGAGGCAATCGCTGCCAGGGTTGTGGATTTCATCAGGCAGCCCGTGCGCATTAGG-TACGCTGTTAGCCGTTTCT
GTCAGGTGCAAAAATAAGGATTTAGTCAAGTTTCAGATTAGA----ATCTCATGCCAGGATGTTGGAATG---------A
TTGTAT---------GGGAC------TGGAATTGCATGTTACTGATTTGAAGCCCTTCCTTGGTAGCTGATACATTTTGC
CTCCTTCCCCGTAATTGAGATTCCAATG-----------CTAGATCAGTATGCAGCACTAGTATCCATATTGCCGTCTCA
TGCGTCTGAACAAATACAATGTTGAGCACCAGGATAATGTTGAAACTGTATC-----------------AGTTATATTAA
GTACTAGTGTGCAATCTTGTAATTTTTTTACCGGTATCCGCACTCGTTTTCTTTGTTAAGACTGTCACTAGAGGCGGA--
ATAAGCCCCTCATTTTGCATTTCATCAGTTCCCTGTATGCTAGC--TAGATGGCATCTTCCACTCTGAAAACAGGTGTGC
CTGTCACTCTGCAAGAGCTAGAGCCCTCCTCGGAGATGTTCAAGCAAGGAGCATCCATTCGAGTAACTGGAATGTA----
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>chr1D_996
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------------------------------------------GC--TAGATGGCATCTTCTACTCTGAAACCAGGTGTGC
CTATCACTCTGCAAGAGCTTGAGCCCTCCTCGGAGATGTTCAAGCAAGGGGCATCCATCCGAGTAACAGGAACGTACGTT
ATTGCAGC----TGCTTCCATCTGAAAACCACAACTTCTAATTAACTGTGCTAACCTTCTTGGCTTGCGATTCTCCAGCC
TTCAGTCATACGATGTGGACTCCGCGGTTGCCGTCATACGAGATGGCAGCGCGACGCTTAGAATTGACACCCAGCACCTG
AGGGAAATCGGTTTCCGCAGCGGCTCTATGTTCCAGTTCATCGGCGAGCTCCTGATCCGGCCAAACAACGACGTAATTCT
CTAACCTTCTCCAGCTTTTAGCAGT-------------CTGGTATCAGTTGAACAATGGTGCATCA-------AATTTGT
TGCTTA----CATCCTGCAGGCGATTCTGCAAGCACGTGTGGGCAGGAACGTTGATGGCCTTGACCTGAACCTTTACCAG
CAGTCTCTGATCATCCGGCGGCAGCATAAAGCCAGACTGCTGAG------GAGGGATTGATCCAAAGCTGTGA---AGCA
GGCTCATGCC-TCATTTC------------------AGTTCCGGAGGACATAATCACCTCGACTC-GACAATCCTGGGCT
TCAATTTTTTAGATGGGTGCAAACCTACAAAGTAGTACTAGTAGCTGTTAACTGAATTTCCTGAGCACAGAGTATT----
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>chr1B_996
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------------------------------------------GC--TAGATGGCATCTTCTACTCTGAAATCAGGTGTGC
CTGTCACTCTGCAAGAGCTAGAGCCCTCCTCGCAGATGTTCAAGCATGGGGCGTCCCTCCGGGTAACAGGAACGTACGTT
ATTGCAGC----TGTTTCCATCTGAAAACCACACCTTCTAGTTAACTGTGCTAACCTTCTTGGCTTGCGATTCTCCAGCC
TTCAGTCATACGATGTGGACTCCGCGGTTGCCGTCATACGAGATGGCAGCGTGACGCTTAGAATTGACACCCAGCACCTG
AGGGAAATCGGTTTCCGCAGTGGCTCTATGTTCCAGTTCATCGCCGAGCTCTTGATCCGGCCAAACA--GACGTAATTCT
CTAACCTTCTCCAGCTTTTAGCACT-------------CTGGTATCAGTTGAACAATGGTGCATCA-------AATTTGT
TGCTTA----CATCCTGCAGGCGATTCTGCAAGCACGTGTGGGCAGGAACGTTGATGGCCTTGACCTCAACCTTTACCAC
CAGTCTCTGATCATCCGGCGGCAGCATGAAGCCAGACTGCTGAG------GAGGGCTTGATCCAAAGATGTGA---AGCA
GGCTCATGGCCTCATTTCAGTTACTCCGAAGTGTGGAGCGCAGGAGGACATAATCACCTTGACTC-GACGATCCTGGGCT
TCAGTTTTTTAGATGGGTGCAAACCTACAAAATAGTACTAGTAGCTGTTAACTGAATTTCCTGAGCACAGAGTATTCCTC
TA------------------------------------------------------------------------------
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>SNPs
-------------------------S------------S----------S-------S-------------SS-------
-S-----S-----------------------S---------S--------------SSS-----------------SS--
--------------------------S-----------------------------------------------------
------------------S-----SSSSS--SS-SSSSSSSS------SS-S----------------------------
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---------------------------------------S--S-------------S---------------------S-
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------------------------------------------------------------S-------------------
----------------------------------------------------------------------SSSSSSSSS-
----------------S---------------------------------------------------------------
----------S-------------S-SSSSSS-----------------------------S------------------
--------------------------S-------------------------------------S---------------
-----S-----------------------S------------------------------------S-------------
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----S--------S------------------------------------------------------------------
--------------------------S-----------------------------------S-----S-----------
S----------------------------------------S--S-----------------------S-----------
-----------------S---S------------------------S----------------------SSSS-------
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--------S--------------------------------------------S-----------------------S--
-----S--------------------------------------------------------------------------
------------------------------------S-------------------------S----S------------
---S--S---S------S---------S----------------S----SS----S---------SS---SS-S------
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---------S---------------S------------------------------------------------------
--S-----------------S---S---------S----S-----SS-S--SS--SSS--------------------S-
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-
--------S----------------------------------------------------------S--------SSSS
SSSSSSSSSSSSS-------------------------------------S---S--S-----S----------------
--S--------------------------------------------S-------------------S-----------S
-------------------------S---S------------------------------------------S--S----
----S-----------------S-----------------------------------------------SS---SSSSS
-S----------S-------------S------------------SS-------------------------S-------
--------------------S--------------------
>forward_272
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------------GCCAGTGCCAGTACCAGTAC------------------------------------------------
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>reverse_2332
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-----------GCATGCATCAACCCTTCAGC-------------------------------------------------
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