>input_sequence_75978
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-------ATGGAGAAGTCCCCAGCCACAGCAGGATGCCATCATGCACCACTTTTCCAAGACCCGCTTGGTATTCTCATCC
TTTTCATCCTCACCTGGTGCATCTCAAAGCTTCAAAGTCTCCTTCCCACTTCTTGTTGCCAATCCTGCACTTGTACTGTC
TCCACGACAACCTCGACACCGGTCCTCGCCGAGACGAAGACATCGAAGGCGCCAAAAAAGAGTGAATACGATGAGATGAA
TGCGACGCAATCAGATGCGGAGGTAGCCATGAGAAAGATGGGATTGGATTTTGATCAAGAGAAAAGCTGTGAATATATTT
CTACGTTGTTCAACGACGACGAACCAAGCTTCCAGGAAGTGAAGATGGCCTTCTTGGTTTTTGATGAGAACAATGATGGG
TACATCGATGCATCGGATCTGCGACGAATCCTCGACAACTTGGGATTAGGTGACCAGGTAGGGGTCAATGAGTCTGAGCA
GATGATTGCTAGATATGACATGAACAATGACTGGAGGATAGATCTGATGGAGTTCACTAAGGTTTTGGAGGATAGCTTTT
GCTAA---------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G422600
AAAATCTGCTCAAACAGTGCACTCACATTTTGACTAATTTTCAGTGATTTTGTCTTTTTTGTATT-GAGCTCCTCGAATG
TTATTTGACCATCAAACTTT-CAAGCGCCCATAACATTTATTGGTAAACATTCTCACAAAA-TTCAGAATTTTTTGAATT
GTTTTGCTATATTTTCTTGCGTGGGTGGACCGTGTGTGCACTGAAGATGGGTGCAGCCACTACTTTCCCTCAATTTCTTG
GACGATGAACACCGATAACTCAGCGATGAACAAGTCTAGACCTTCACCGCGGACAAGAAATCGGAATCATCTTGACAAGC
AAGATTTGCACAAGGCAACGAATTAACTCTGATATACTAAGTTACAGAAGAATACTTCTACTCAAGTCTCGAATCTTCTT
CAGAAGA---TGTCCCTCAGGTCTAGATCAAGTCTTGTTCTTTTTCCAAGGAAATACCGGCTTGTTGCTTTCCCGGAAAT
TTCAGTGTAAGCACCATGCATATAGCATATTCAACTTGGGAAAAAGGAGTCAAAAACTGCACATTCGGTTCTAACCTGAT
ATGAACATTTATTTAGACATCATGTCCTGTATGTTTCCCAACATAGACACAACGAAATTGCCAACCACAGTTTGTGAACT
AAACTAACTAGTACCACATCATGGTGGCACCGAA------------TTTTGCGTGTGGGAGGGGAGAGACTTTTCCAGGA
AACATCCAGTGGAGTAAAAGAAGATTGAAAGAAGCAACAAAGACCACGATCATGCATGCACACTTTGAATCTTAGACAAC
ACGTCATCATCTTGCTGTCTTGTCTACTATTCTCCC---------------------ATAAGTTTTTTCAAAGTGGAAAC
ATCCTCTCATCTGCCTAGATCTTTCATATTGATTCTGT-------TGAAGCTACAAGCCTAGAAAAA-CAAACAAGAAAC
AACAACTTCCCTTCCTATATAAACCTTCATTGATACATGATCTTTCCCACACCAAAACAACCAGATCTCAGGCTCATAGC
TCAGACAATGGAGAAGTCCCCAGCCACAGCAGGATGCCATCATGCACCACTTTTCCAAGACCCGCTTGGTATTCTCATCC
TTTTCATCCTCACCTGGTGCATCTCAAAGCTTCAAAGTCTCCTTCCCACTTCTTGTTGCCAATCCTGCACTTGTACTGTC
TCCACGACAACCTCGACACCGGTCCTCGCCGAGACGAAGACATCGAAGGCGCCAAAAAAGAGTGAATACGATGAGATGAA
TGCGACGCAATCAGATGCGGAGGTAGCCATGAGAAAGATGGGATTGGATTTTGATCAAGAGAAAAGCTGTGAATATATTT
CTACGTTGTTCAACGACGACGAACCAAGCTTCCAGGAAGTGAAGATGGCCTTCTTGGTTTTTGATGAGAACAATGATGGG
TACATCGATGCATCGGATCTGCGACGAATCCTCGACAACTTGGGATTAGGTGACCAGGTAGGGGTCAATGAGTCTGAGCA
GATGATTGCTAGATATGACATGAACAATGACTGGAGGATAGATCTGATGGAGTTCACTAAGGTTTTGGAGGATAGCTTTT
GCTAAACATATTTATTTCTGTATTTGTTTTCCTATATCTGTGAGATGCATTTACATGTTGTGATTGACTGAATTCCGCCA
CTTGATTCCAGAACTAAATAACTGGTCTTTTCTTTTT---------------GAAAAAGGGG------------------
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----------------------------------TTTGGCGTCTAGCATTGCCACTAGCCATCTTCTTTTTTTAT-----
-----------------------------------------------------------TGCGAGAGAAATTTTCAATCT
ATTTATCAATCATGGCAGTACTGAGAACACTTGAGCTAGGTGATAAAAATTACAACCAAGTTCATGGACCACCTAGCGAC
GACTACAATCACTGAAGCGAGCCGAAGGCGCGCCGCCGTCATCGCCCCTCCCTCATCAGAGTCGGACAAACCTTGTTATA
GTAAATAGTAGGGAAGTCGTCGTGTTAAGGCCCCAATGAAACAGCACACCAGAGCAGCAACCATCATCGATGAAGAGAAT
TGTAGATCGGAAAGATCAAACCTGTAACCAAATGAACGAAGACGAACAAAAACTGGATCCAAATAGATCCATCGAAGATA
AGCACCGACCGAATCCCGCAAGATCTGACGGAGCCACACCTCCACATA-TCCTCTGACGATGCTATTCGCCACTAGCTAT
CTTACATGCATGAATGTGGATTGCGATGAATCCCAGCCCATCATCACCAAGGATCATGCAAGATCCCCA-----------
-AAATAACACAGACCA-GTTTGAGAACTGGATGTACCCAACCAGTATTCAGGTACAAACATTGTTTGTACTCCCTCCGTT
CCAAAATATAAGTCTGTTTAGAGATTTTAGTATGAATTACATACGGAGCAAAATGGGTGAATCTACATTCTAAATTACGT
CTGTATACATCTGTATGT--------------------------------------------------------------
------------------------AGTTCATATTGAAATCTTTAGATGACGGCTGAGGGCAACAGCAATAGCGTAGCTAG
AAGCTAGTCCAAGCTAGGAAGAAGATCATGAACAGCAGGTGGCCAGAAGAACGTGCTGGCGTGGCAGCTAGCGACGTGCG
CGCATCAGGTTGGCCGGGACGACACAGTTTTAGCTG
>chr1D_1
AAAATCTGCTCAAATAGTGCACTTATATTTTGACTAATTTTCAGTGATTTTGTCTTTTTTTGTACAGAACTCCTCGAATG
TTATTTGACCACCAAACTTTTCAAGTGCCCATAACATTTGTTAATTATCATTTCCACAAAATTTCAGAATTTTTTGAAAT
ATTTTGGTATAATTTCTTGCGTGGGTGCACCGTGGATGCACCAAGCTAGGGTGTAG------------------------
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--------------------------------------AAAAACCACTCTC-----------------------------
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-------------------------------------------TTCCTTTTGGAAAAATAGTGATTGCACCCACTTTTGA
TGCACCCACGGTGCTCCCATACAAGAAAATATAACAAAAAAATTCAAAAAATTCTGAAACCTTGTGGGAATGAACATCGT
CAAATATTATGGGTGTTTGCAAAGTTTGATGGTGAAATAACATTCGAGGAGTTCTGTACAAAAAAAGAGAAAATTACAAA
ATCTGCTCAAATAGTGCACTTATATTTTGACTAATTTTCAGTGATTTTGACTTTTTTTTCTACAGAACTCCTCGAATGTT
ATTTGACCACCAAACTTTTCAAGTGCCCATAACATTTGTTAATTATCATTTCCACAAAATTTCAGAA--TTTTTTGAAAT
ATTTTGGTATAATTTCTTGCGTGGGTGCACCCACTTTCGATGCACCCACGGTGCTCCCATACAAGAAAATATAGCAAAAT
ATTTCAAAAAATTCT---------GAAACCTTGTGGGAATGAA-------------------------------------
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-----------------------------------------CATCATCAAATATTATGGGTGTTTGCAAAGTTTGATGGT
GAAATAACATTCGAGGAGTTCTGTACAAAAAAAGAGAA------------------------------------------
----------------------------------AATTACAAAATCTGCTCAAATAGTGCACTTATATTTTGACTAATTT
TCAGTGATTTTGTCTTTTTTTTACAGAACTCCTCGAATGTTATTTGACCACCAAACTTTTCAAGTGCCCATAACATTTGT
TAATTATCATTTCCACAAAATTTCAGAACTTTTTGAAATATTTTGGTATAATTTCTTGCGTGGGTGCACCGTGGATGCAC
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>chr1D_229
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-----------------------------------------------------------------------AATTTCTTG
GACGATGAACACCGATAACTCAGCGATGAACAAGTCTAGACCTTCACCGCTGTCAAGAAATCGGAATCATCTTGACAAGC
AAGATTTGCACAAGGCAATGAATTAACTCTGATATACTAAGTTACAGAAGAATACTTCTACTCAAGTCTCGAATCTTCTT
CAGAAGAAGATGTCCCTCAGGTCTCGATCAAGTCTTGTTCTTTTTCCAAGGAAATACCGGCTTCTTGCTTTCCCTGAAAT
TTCTGTGTAAGTACCATGCATATAGCATATTCAACTTGGGAAAAAGGAGTCA-AAACTGCGCATTCC-------CCTGGT
AAGAACATTTATTTACACATCATGTCCTGTC----TCCCAGCATGGACAGAACGACGGAGCCAACCACAGTGTGTGAACT
CAACTAAGTAGTACCACGTCATGGCGGCACCGAACATGCATCAGACTTTTGCGTGTGGGAGG--AGAGACTTTTCCAGGA
AACATCCAGTGGAGTAAAAGAAGATTGAAAGAAGCAACAAAAACCACGACCATGCACACACTCTTTGAATCTTAGACAAC
AAGTCATCATCTTG---------------------C---------------------ATAAGTTTTTTCAAAGTGGAAAC
ATCCTTTCATCTGCCTAGATCTTTCAGACTGGTTCTGTCGT----TGAAGCTACAAGCCTAGAAAA--CAAACAAGAAAC
AACAACTTCCCTTCCTATATAAACCTTCACTGATACATGATCTTTCCCACACCAAAACAACCAGATCTCAGGCTCATAGC
TCAGACAATGGAGAAGTCCCCAGCCACAGCAGGATACCATCATGCACCACTTTTCCAAGAGCCACTTGGTATTCTCATCC
TTTTCATCCTCACCTGGTGCATCTCGAAGCTTCAAAGTCTCCTTCCCACTTCTTGTTGCCAATCCTGCACTTGTACTGTC
TCCCCGACAACCTCGACGCCGGTCCTCGCCGAGACGAAGATATCGAAGGCACCAAATAAGAGTGAATATGATGAGATGAA
TGCGACGCAGTCAGATGCCGAGGTAGCCATGAGAAAGATGGGACTTGATTTTGATCAAGAGAAAAGCTGCGAATATATTT
CTACGCTTTTCGATGAAGACGAGCCAAGCTTCAAGGAAGTGAAAATGGCATTCTTGGTTTTTGATGAGAACAATGATGGG
TACATCGATGCATTGGATTTGCGACGAGTCCTCCACAACTTAGGGTTAGGCGACCGGGTAGGGGTCAATGAGTCTGAGCA
GATGATTGCTAGATATGACATGAACAATAACAAGAGGTTAGATTTGATGGAGTTCACTAAGGTTTTGGAGGACAGCTTTT
GCTAGACCCCTTTATTTCTGTATTTGTTTTCCTATATCTGTGAGATGCATTTACGTGTTGTGATTGACTGAATTCCGCCA
CTTGATTCGAGAGCTAAATAACTGGTCTGTTGTTTTTTTTTCTTTCCTTTTTGAAAAAAGGG------------------
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----------------------------------TTTGGCATCTAGCATTGCCACTAGCTATCTTTC--TTTTAT-----
-----------------------------------------------------------TGCGAGAGAAATTTTCAATCT
ATTCATCAATCATGGCAGTACTGAGAAAACTTGAGGTAATAAAGGTACAATCAGGTC-----CATGGATCACCTAGCGAC
GACTACAAGCACTGAAGCGAGTCGAAGGCGCAGCGCCGTCATCGCCCCTCCCTCACGAGAGCTGGAAAAATCTTGTTGTA
GTAGATAGTCGGGAAGTTGTCGTGCTAAGGCCCCAATGAAACAGCGCACCAGAGCAGCAACCATCATCGATTGAGAGAGT
TGTAGATCGAAAATATCAAACATGTAACCACATGAACGAAGACGAACAAAAGCTGGATCTAAATAGATCCATCGAAGATC
AGCATCAACTGAATCCCACGATATCCGACGAAGACACACCTCCACACATTCCTCCGACGACGCTATTCGCCACTAGCTAT
CCTACATGCATGACTGTGGATTGCGATGAATCCCAGCCCATCATCACCAAGGATCATGCAAGATCCCCC-----------
-AAAAGAACACATACCCGTTTGAGAACTGGATGTACCCAACCAGCATTCAGGTACAA-----------------------
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>chr1A_252
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--------------ATAGCTCAGCGATGAACAAATCTAGACCTTCGCCGTGGACAAGAAATCGGAATCATCTTGACAAGC
AAGATTTGCACAAGGCAGCAAATTGACTCTGATATAAAAAGTTACAGAAGAATACTTTTACTCGGGTCT-GAGTCTTCTT
CAGAAGA---TGTCCCTCAGGTCTCGATCAAGTCTTGTTCTTTTTCCAAGGAAATACCGGCTTCTTGCTTTCCCTGAAAT
TTCTGTGTAAGCACCATGCATATAGCATATTCAACTTGGGGAAAAGGAGTCAAAAACTGCACACTCGGACTAACCAA-GT
ATGAACATTTATTTACACATCATGTCCTGTATGTCTCCCAACATAGACACAACGAAGTTGCCAACCATACTGTGTGAACT
CAACTAAGTAGTACCACATCATGGCGGCACTGAACATGCATCG------------------------GACTTTTCCAGGA
AACATCCAGTGGAGTAAAAGAAGATTGAAAGAAGCAACAAAAACCACGACCATGCACACACTCTTTGAATCTTAGACAAC
AAGTCATCATCTTG---------------------CTGTCTTGTCTACTATTTTTCCATAAGTTTTTTCAAACTGGAAAC
ATCCTCTCATCTGCCTAGATCTTTCATATTGATTCTGTTGAAGGATGAAGCTACAAGCCTAGAAAAAACAAACAAGAAAC
AGCAACTTCCCTTCCTATATAAACCTTCACTGATACATGATCTTTCCCACACCAAAACAACCAGATCTCAGGCTCATAGC
TCAGACAATGGAGAAGTCCCCAGCCACAGCAGGATGCCATCATGCACCACTTTTCCAAGAGCCAGTTGGTATTCTCATCC
TTTTCATCCTCACCTGGTGCATCTCAAAGCTTCAAAGTCTCCTTCCCACTTCTTGTTGCCAATCCTGCAATTGTACTGTC
TCCACGACAACCTCGACGCCGGTCCTCGCCGAGAAGAAGACATCGAAGGCACCAAATAAGAGTGAATATGATGAGATGAA
TGCGACGCAGTCAGATGCCGAGGTAGCCATGAGAAAGATGGGACTCGATTTTGATCAAGAGAAGAGCTGTGAGTATAGTT
CTACGCTTTTCGACAACGACGAACCAAGCTTCCAGGAAGTGAAAATGGCATTCTTGGTTTTCGATGAGAACAATGATGGG
TACATCGATGCATTGGATTTGAGAAGAATCCTCCAGAACTTGGGATTAGGTGATCGGGTAGGGGTCAATGAGGCTGAGCA
GATGATTGCTAGATATGACACGAACAATGACAGGAGGATAGATCTGATGGAGTTCACTAAGGTTTTGGAGGATAGCTTTT
GCTAGACATACTTATTTCTGTATTTGTTTTCCTATATCTGCGAGATGCATTTACATATTGTGATTGACTGAATTGTGCTA
CTTGACTCCAGAATTAAATAAC----------------------------------------------------------
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>SNPs
--------------S--------S-S----------------------------------SSSSS---S-----------
-----------S-------------S-------------S--SS-S-S----SS------------------------S-
S-----S----S---------------S------SS-----SS-SSSS-----S--SSSSSSSSSSSSSSS---------
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------------------------S--------------------------------------S----------S-----
---S----------------------------------------------------------------SSSS-S----S-
---------------S------------------S---------------------S--------------S--------
S------S----------------S-------------------------------------SS----------------
-----------------------------------------S--------------SS---S------------------
-S------------SSSSSSSSSSSSSSSSSSSSS---------------------------------------------
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-----------------------------S--------------------------------------------------
------------------------------------------------------------S--S----------------
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-----------------S--------------------------------S-----S-----------S-----------
---------S--------S------------------------S-S----------------------------------
-----S-S---S-------------------------------S-----S------------------------------
-------------S----S--------------S---------------------S------------------------
-------------------------------S------------------------------------------------
----S---------------------------------------------------------------------------
----------------------------S--S--------------------------S---------------------
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----------------------------------------S------------------S-----SSSS-----------
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---------------------------S-------S--SSSS-SSS-S-S-SSSSS-SSSSS------S-----------
--------S------------S---------SS----------------------SS----SS---S---S------S--
---S-----S-------S------S--------------------S-------------------------SS-----S-
---------S---S-------S--------S--------------------S-------S-------------------S
----S-S--S-------S-S-S---S----S--S------------S-------S-----S-------------------
-S-----------S------------------------------------------------------------------
---------SSSSS-S----------------------------S------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-SSSS--SS--SSS---S-SS--S---S-S-S-S-SS-
SSSSSS-SS-SSSSS-S---------------------------------------------------------------
--------------------------SS-S-S-------S---S-S-SSSSSS-SSS-SSSSSSSSS-SS-S-S-SSS-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_223
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-------------------------------------------AAGATGGGTGCAGCCACTAC-----------------
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>reverse_2487
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------GACCGAATCCCGCAAGATCT------------------------------------------------------
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