>input_sequence_75904
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---------------------------------------------------ATGCGGCGGCTCAGCGACGCAGGGGAGGC
CACGCCGCTGGTCACCCCCGCGGCGGCCGCGGCGGCGGGCGGCACCTTGGCATCGCCGGCCGCTGCGGGGAGCAACGCCA
ACTTCGACGCCAACATGGTGATCATCCTGGCCGCGCTGCTCTGCGTTCTCATTTTCGCGCTTGGGCTCAACTCCGTCATC
CGCTGCGTGCTCCACTGCGGCCGCCGGCTCGCGCCGTCGTCGAGCCTCGCGGCCAGCGCCACCACGGCGAGGACGACGAC
ATCCGTGCACGTGCAGGCGGGGCTCAAGAGGAAGGCGCTGAGGAAGATACCCGTGGAGGTGTACGGCGGAGCCAAGTCGT
CCGGCGGCGCCCTCCCAGCCACGGCCACGGAGTGCGCCATCTGCCTCGGCGAGTTCGCCGACGGCGAGAAGGTACGCGTG
CTCCCGCGGTGCCACCACGGATTCCACGTCCGCTGCATCGACATGTGGCTCGCCACGCACACCTCCTGCCCCAACTGCCG
GGCCTCGCTCGCTGAGGACGGCGCCGCCGCTGCCAACGGCGGAGGGAGATAG----------------------------
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>chr4A_1_TraesCS4A01G194200
CACAAAATGATGCTCGGTACAGCTAAATTATGTGGGTAAAACGATAAGTGCTCAATTTCACTAGTCAATTGAACAAAAAA
TAGACCAATTGACCTCAGCTCGGATGGTTAGGATCTTGTGACAGAATCGACCTAGGGTTCACGTCCTAGGCTTGACACT-
GTGCTCGTATGTCTCTTAATTTATTTCAGACTTTTTGGTAATGTTTATTTAGTGACAGATGACATTATTGCTGACTATAA
GACCTTTGTAGTGACTTCATTAATCCTAAGATGTTAGATGTGCATTTTGTGAGCATATGCTATTTTACTGTGTTAAAAAA
TGAACGAAAGATACCGTAGGCAGAAACGAAAAAAGACCAAGTTGTTTCACGATGATCAATCACTGGGTGATTGGACCACA
CACATCAAGCCCCTATATGAATGAGGGCTTTCGCTCTCTGTGTGCCGAAATGTAGACATCATCAAGGTCCGAATAGCTGT
TGGACTCTCTCGTTTCAGCCGAGATATGAGACCCACGTTGCAGCTGAGTATGGGCAGGAACAGAGGAGTGGCATCTAGTC
GAAATCGAAACCACAACAACACGCACGGCCGGCAGACATAGCGGGGAAAAAAAATATGGCGGCCACTAGCGAGACGTGAT
TACTCTCGTCGAGTTGGGTCCTCT--ATGTTTCTAGAGAAAAGCAAAATCCAACAACAATATTCCCTCAATTTCCTAAAT
TTGCCGACTAGCTACCTAGCTAGGGTTAGCATCTCTTACACGAAAAGTATATCTGTATATGTCTAAAAGAGACTCGCGAG
GATGCACACACGAATACACACAGCTTTCGCTTT------CACTTTCACTTTCGCAGCTGCGCCAAGGAAAAGAAAAGAAG
ATGTCTCGATTCCCATGTATGCACTACTCGATCATATCCCGAACCAAAACGCTCTCTTGATTTCTTCCCGAAACCACCAC
A--CACACGTCCATCAGCAGCTCGCGAGCTCAGCTGGTACGCAGGCACACCATGCGGCGGCTCAGCGACGCAGGGGAGGC
CACGCCGCTGGTCACCCCCGCGGCGGCCGCGGCGGCGGGCGGCACCTTGGCATCGCCGGCCGCTGCGGGGAGCAACGCCA
ACTTCGACGCCAACATGGTGATCATCCTGGCCGCGCTGCTCTGCGTTCTCATTTTCGCGCTTGGGCTCAACTCCGTCATC
CGCTGCGTGCTCCACTGCGGCCGCCGGCTCGCGCCGTCGTCGAGCCTCGCGGCCAGCGCCACCACGGCGAGGACGACGAC
ATCCGTGCACGTGCAGGCGGGGCTCAAGAGGAAGGCGCTGAGGAAGATACCCGTGGAGGTGTACGGCGGAGCCAAGTCGT
CCGGCGGCGCCCTCCCAGCCACGGCCACGGAGTGCGCCATCTGCCTCGGCGAGTTCGCCGACGGCGAGAAGGTACGCGTG
CTCCCGCGGTGCCACCACGGATTCCACGTCCGCTGCATCGACATGTGGCTCGCCACGCACACCTCCTGCCCCAACTGCCG
GGCCTCGCTCGCTGAGGACGGCGCCGCCGCTGCCAACGGCGGAGGGAGATAGCGCCGGACAGGGTACGGGTTTGTAATTT
CTTCTAGT--TAGGGAACTAAAGTGAAACGTTGCACCGCTGCTTTGCTTCCTCACTAGTGTGTCTTTGGTCTGATTTTGG
TTTTCGTATGGGTGGTACATGTAAATTAGTATTTACATTTTGCGATGATAGAAGGGGCTTGATGCAAATGTTCCTCGTGT
CCTTGTCATTTTGGGTTGGAGCATACGATATTTTTTTTGTCATGATTCTCCCATTTTATAACTTTCTTTAAAGATGATAC
GATGTTCCATTTTTTGT-TTCTAAGATGAGTAGTATTGCGCTGTTCTTTTGGTTACCCAACAGCCAAGACTTTCCCAATG
GACATGTCTTTTTCTCAAATAATGTTGTCTAGTGACATTTTCCTATTTACTATCTGCACGTTGCTGAACAGATATTAGTA
GCTTTATTACTCTTATCTATAATAATGATTATTTTTTGTTTTCTGG-AAAAAGTAAATAATGAGTTATTGTTCACTAATA
ACATATAATAGTGTGTTTTTTCACATAATAATAATAATTTATATTGTCCTTGTTAACTTGTGTTCAAAGCATGGTATTTC
TAACGAATGAAAGAAAATAAGCAAAGAACAGTAGTAAAATATAAGTATACCTTCTCTAGCTGGTCACCGCCAATAAGTAT
ATCTTCTCTAGCTGGTCACCACTGATAGGCCTTAGACCAACTCCAACAGATCTTATAAAAACCTTTTCATAAAAGTGCTT
TCATGGTATGATCGCATAATTTGCCGGAATTGTCAGAAAGCTACTTTTCTCAGTTCCCGTAAAATTTCTTCCCCTAAAAT
CTTGTTTTCCTTTTC-C-CCCACTAAACATCGTTGGGACTGCAAGCCGGTGACGCAGCATTGGGAAGTGTGGCAACAGCC
GCCGGAGCAGGCGGACCGGTGAGGTGGTACAGCTAGGGAGGCGCGTCGGCGGCCATCTCGATGAGGTGGGGAAGCGAAGG
GGGGCATCCTAGCGGTGG
>chr4D_1
CACAAAATGCTGCTCCACACAGCCAAATTATGTGGGTAAAATGATAAGTGCTCAATTTTACTAATCAAATGAACGAAAAA
TAGACAAATTGACCGTAGCTCGGATGGTTAGGATCTTGTGGCGGAATCGACCTAGGGTTCACGTCCTAGACTTGACACTA
GTGCTCGCATGTCTTTTAATTTATTCCAGACTTTCTGGCAATGTTTATTTGGTGAGAGATGACATTACAACCGATTATAA
GGTGTTTGTGCTGACTTCATTAATCCTAAGATGTTAGATGTGCATTTTGTGAGCATATGCTATTTTACTGTGTTAAGAAA
TGAACGAAAGATACCGTAGGCAGAAACGAAAAAAGACCAACTTGTTTCACGATGATCAATTACTGGGTGATTGGACCACA
C--ATCAAGCCCCTATACGAATGAGGGTTTTCGCTCTCTGTGCCGG--AATGTAGACATCATCAAGGTCCAAATAGCTGT
TGGACTCGCTCGTTTCAGCCGAGATATGAGACCGACGCTGCAGCTGAGTATGGGCAGGAACAGAGGAGTGCCATCTAGTC
GAAATCGAGACCACAACAACACGCACGGCCGGCAGACATAGCGGGGT-AAAAAATATGGCGGCCACTAGCGAGACGTGAT
TACTCTCGTCGAGTTCGGTCCTCT--ATGTTTCTAGAGAAAAGCAAAATCCAACAACAATATTCCCTCAATTTCCTAAAT
TTGCCGACTAGCTGCCTAGCTAGGGTTAGCATCTCTTACACGAAAAGTATATCTGTATATGTATAAAAGAGACTCGCGAG
GATGCACACACGAATACACACAG------CTTT------CACTTTCACTTTCGCAGCTGCGCCAAGGAAAAGAAAAGAAG
ATGTCTCGATTCCCATGTATGCACTACTCGATCATATCCCGAACCAAAACACTCTCTTGATTTCTTCCTGAAACCACCAC
A--CACACGTCCATCAGCAGCTCGCAAGCTCGGCTGGTACGCAGGCACACCATGCGGCGGCTCAGCGACGCAGGGGAGGC
CACGCCGCTCGTCACCCCCGCGGCGGCCGCGGCGGCGGGCGGCACCTTGGCGTCGCCGGCCGCTGCGGGGAGCAACGCCA
ACTTCGACGCCAACATGGTGATCATCCTCGCCGCGCTGCTCTGCGTTCTCATTTTCGCGCTCGGGCTCAACTCCGTCATC
CGCTGCGTGCTCCAGTGCGGCCGCCGGCTCGCGCCGTCGTCGAGCCTCGCGGCCAGCGCCACCGCGGCGAGGACGACGAC
ATCCGTGCACGTGCAGGCGGGGCTCAAGAGGAAGGCGCTGAGGAAGATACCCGTGGAGGTGTATGGCGGGGCCAAGTCTT
CCGGCGGCGCCCTCCCGGCCACGGCCACGGAGTGCGCCATCTGCCTCGGCGAGTTCGCCGACGGCGAGAAGGTGCGCGTG
CTCCCGCGGTGCCACCACGGATTCCACGTCCGCTGCATCGACATGTGGCTCGCCACGCACACCTCCTGCCCCAACTGCCG
AGCCTCGCTCGCTGAGGACGGCGCCGCCGCTGCCAACGGCGGAGGGGGATAGCGCCGGACAGGGTACGGGTTTGTAATTT
CTTCTAGATATAGGGAACTAAAGTGAAACGTTGCACCACTGCTTTGCTTCCTCACTAGTGTGCCTTTGGTCTGATTTTGG
TTTTCGTATGGGTGGTACATGCAAATTATTATTTACATTTTGCGATGATAGAAGGGGCTTGATGCAAATGTTCCTTGTGT
CCTTGTCATTTTGGGTTGGAGCATACGATATTTTTTTGGTCATGATTCTCCCATTTTATAACTTTCTTTAAAGATGATTC
GATGTTCCATTTTTTGTGTTCTAAGATGAGTAGTATTGCGCTGTTCTTTTGGTTACCCAACAGCAAAGACTTTCCCAATG
GACATGTCTTTTTCTCAAATAATGTTGTCTAGTGATATTTTCCTATTTACTATCTGCACGTTGCTGAACAGATATTAGTA
GCT---TTACTCTTATCTATAATAATGATTATTTTCTGTTTTCTGACAAAAAGTAAATAATGAGTTTCTGTTCACTAATA
ACATATAATAGTGTGTTTTTCAC----AGAATAATAATTTATACTGTCCTTGTTAACTTGTGTTCAAAGCATGGTATTTC
TAGCGAACGAAAGAAAATAAGCAAAGAACAGTAGTAAAATATAAGTATACCTTCTCTAGCCGGTCATCGCCAATAAGTAT
ATCTTCTCTGGCCGGTCACCACTGATGGGCCTTAGACTAACTCCAACAGATCTTGTAAAAACCTTCCCGTAAAAGTGCTT
TTATGGAATGACCATATAATTTGCCGGAATTGTCACATAGCTACTTTTCTCAGTTCCCGTAAAACTTCTTTCCCTAAAAT
CTTCTTTTCCTTTTTTTTCCCACTAAACATCGTTGGGACTGCAAGCCGGTGACACAGCGTTGGGAAGTGTGGCAACAGGC
GCCGGAGCAGGTGGACCGGTGAGGTGGTGCAGCTTGGGAGGCGCGACGGCGGCCGTCTCGATGAGGCGGGGAAGCGAAGG
CGGGCATCCTAGCGG---
>chr4B_1
CACAAAATGATGCTCCGCACAGCCAAATTGTGTGGGTAAAATGATAAGTGCTCAATTTCACTAATCAAATGAATGAAAA-
TAGACGAATTGACAGTAGCTCGGATGGTTATGATCTTGTGGTGGAATCAGCTTGGGGTTCACGTTCTAGACTTGACAGTA
GTGCTCTCATGTCTCTTAATTTATTTCATACTTTCTGGCAATGTTTGTTTAGTGAGAGATGACGTTACTATCGATAATAA
GGCCTTAGTGACGACTTCATTAATCCTAAGATGTTATATGTGCATATTGTGAGCATATGCTATTTTATTGTGTTAAAAAA
TGAACGAAAGATACCGTAGGCAGAAACGAAAAAAGACCAACTTGTTTCACGATGATCAATTACTGGGTGACTGGACCACA
C--ATCAAGCCCCTATATAAATGAGGGTTTTCGCTCTCTGTGCCGG--AATGTAGACATCATCAAGGTCCAAATAGCTGT
TGGACTCGCTCGTTTCAGCCGAGATATGAGACCGACGCTGCAGCTGAGTATGGGCAGGAACAGAGGAGTGGCATCTAGTC
GAAATCGAGACCACAACAACACGCACGGC----AGACATATAGCGGAAAAATAATATGGCGGCCACTAGCGAGACGTGAT
TACTCTCGTCGAGTTCGGTCCTCTCTATGTTTCTAGAGAAAAGCAAAATCCAACAACAATATTCCCCCAATTTCCTAAAT
TTGCCGACTAGCTGCCTAGCTAGGGTTAGCATCTCTTACACGAAAAGTATATCTGTATATGTATAAAAGAGACTCGCGAG
GATGCACACACGAATACACACAG------CTTTCACTTTCACTTTCACTTTCGCAGCTGCGCCAAGGAAAAGAAAAGA--
-TGTCTCGATTCCCATGTATGCACTACTCGATCATATCCCAAACCAAAACACTCTCTTGATTTCTTCCTGAAACCACCAC
ACACACACGTCCATCAGCAGCTCGCAAGCTCAGCTGGTACGCAGGTACACCATGCGGCGGCTTAGCGACGCAGGGGAGGC
CACGCCACTGGTCACCCCCGCGGCGGCCGCGGCGGCGGGCGGCACCTTGGCGTCGCCGGCCGCTGCGGGGAGCAACGCCA
ACTTCGACGCCAACATGGTGATCATCCTCGCAGCGCTGCTCTGCGTTCTCATATTCGCGCTCGGGCTCAACTCCGTCATC
CGCTGCGTGCTCCACTGCGGCCGCCGGCTCGCGCCGTCGTCGAGCCTCGCGGCCAGCGCCACCGCGGCGAGGACGACGAC
ATCCGTTCACGTGCAGGCGGGGCTCAAGAGGAAGGCGCTGAGGAAGATACCCGTGGAGGTGTACGGCGGGGCCAAGTCGT
CCGGTTGCGCCCTCCCGGCCACGGCCACGGAGTGCGCCATCTGCCTCGGCGAGTTCGCCGACGGCGAGAAGGTGCGCGTG
CTCCCTCGGTGCCACCACGGATTCCACGTCCGCTGCATCGACATGTGGCTCGCCACGCACACTTCCTGCCCCAACTGCCG
GGCCTCGCTCGCTGAGGACGGCGCCGCCGCTGCCAACGGCGGAGGGAGATAGCGCCGGACAGGGTACGGGTTTGTAATTT
CTTCTAG--ATAGGGAACTAAAGTGAAACGTTGCACCACTGCTTTGCTTCCTCACTAGTGTGTCTTTGGTCTGATTTTGG
TTTTCGTATGGGTGGTACATGTAAATTAGTATTTACATTTTGCGATGATAGAAGGGGCTTGATGCAAATGTTCCCCGTGT
CCTTGTCATTTTGGGTTGGAGCATACGATTTTTTTTTTGTCATGATTCTCCCATTTTATAACTTTCTTTAAAGATGATTC
GATGTTCCATTTTTTGTGTTCTAAGATGAGTAGTATTGCGCTGTTATTTTGGTTACCCAACAGCCAAGACTTTCCCAATG
GACATGTCTTTTTCTCAAATAATGTTCTCTAGTGATATTTTCCTATTTACTATCTGCACGTTGCTGAACAGATATTAGTA
GCT---TTACTCTTATCTATAATAATGATTATTTTTTGTTTTCTGACAAAAAGGAAATAATGAGTTTCTGTTCACTAATA
ACATATAATAGTGTGTTTTTCAC----ATAATAATAATTTATATTGTCTTTGTTAACTTGTGTTCAAAGCATGGTATTTC
TAGTGAACGAAAGAAAATAAGCAAAGAATAGTAGTAAAATATAAGTATACCTTCTCTAGCT-GTCATCGCCAATAAGAAT
ATCTTTTCTGGCCGGTCACCACTGATAGG-CTTAGACTAACTCCAACAGATCTAGTAGAAACATTTCCGTAAAAGTGCTT
TTATGGAATGACCACATAATTTGCCGGAATTGTCAGATAGTTATTTTTCTCAGTTCCCATAAAACTTCTTTCCCTAAAAT
CTTGTTTTCCTTTTTTC-CCCACTAAACATCGTTGGGACTGCAAGCCGGTGACACAACGTTTGGAAGTGTGGCAACAGAC
GCCGGAGCAGGCTGACCGGTGAGGTGGTGCAGCTTGGGAGGCGCGTCGGCGGCCGTCTCGATGAGGCGGGGAAGCGAAGG
CCGGCAT-----------
>SNPs
---------------S-S-----S-----------------S---------------------S----S-----S-----
-----S--------SS------------------------S-S--------------------------S----------
-------S--------------------------S---S----------------S-----------S-S-S--S-----
-S-------SS---------------------------------------------------------------------
----------------------------------------S-------------------S-------------------
-SS------------------------S--------------SSSSSS----------------------S---------
-------S-------------------------S---S------------------------------------------
--------S-----------------------------------------------------------------------
---------------S----------------------------------------------------------------
-------------S------------------------------------------------S-----------------
-----------------------SSSSSS---------------------------------------------------
--------------------------------------------------S-----------------S-----------
-------------------------S------------------------------------------------------
---------------------------------------------------S----------------------------
----------------------------S--------------------------------S------------------
---------------------------------------------------------------S----------------
---------------------------------------------------------------------S----------
----------------S--------------------------------------------------------S------
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-------S-----------------------------S------------------------------------------
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------------------------------------------------------------------------------S-
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-----------------------------------S--------------------------------------------
---SSS---------------------------------------S--------------------SS------------
--------------------SSSSSSS-----------------------------------------------------
--S----S----------------------------------------------------------S-------------
---------S--S------------------------S----------------S-----------S-S-----------
-S----S----S-S-----------------------S--------------------------S-----S---------
--------------S--------------------------------------S----S-------------------S-
----------------------------S-----S-------------------S-----------S-------------
S--------------SSS
>forward_402
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--------------------------------------------------------------CTGGGTGATTGGACCACA
CA------------------------------------------------------------------------------
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>reverse_2253
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------------TGGTCACCACTGATAGGCCT------------------------------------------------
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