>input_sequence_75896
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-----------ATGCTATGCGCCGCGCCGCGCCCGCCGACCAATTCCGCGCCCCTACTTAACCCCGGCGAACCCGTCCCA
------AGATCCTCAGACCACCGCGCCGAACAACTCTCTCGCCAGCACGCAGCAAACTCCCCAGCCTTCCCTCGCCCCGG
ATCCGT-AAATGGCCCGCACGAAGCAGACCGCGCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCGACCAA
GGCGGCGCGCAAGTCGGCGCCGGCGACGGGA-GCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGCG
AGATCCGCAAGTACCAAAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTCGTCCGGGAGATCGCGCAT
GACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCCCTGCAGGAGGCCGCCGAGGCCTACCTCGTGGGGCT
CTTCGAGGACACCAACCTCTGCGCCATCCACGTCAAACGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCA
TCCGCGGGGAGCGCGCGTAG------------------------------------------------------------
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-----------------------------------
>chr3A_1_TraesCS3A01G265800
GTAAAAACTAACAATAGTAATTCTTGGATAACAAGAATGAATCATAAAAAGCGCATAAATTCAGGACACAAATGAAGCAA
GAAGTCGCAAACATAGACATACCCCAAAATTAAGACCAGAGGCAAAACATGTTATATGGTTTGAAGGGAAAGTGTAACCC
AACATACAAAGTTA-GAATATAGGCAAAAAGATATAGTCATTGCAATCGAACGTCAAGAAATTAGAATGAAGGTGGAAAA
GACCAACTAAATA-----------------ATTCAGCAGGAATCACAATAGGTGATCGGACTGCAAGAAA-TTTGAGTGA
AACAAATTGAAATTAGTCGTATGGAAAATACTACTCCCTCTACACGCAAA------------------------------
--------------------------------------AAAAATACTACTCCCTTGGAT-GGAAATAAGTGCTGAAAAAA
AAAACGTTTTCCTTAACCATCCCC--------------------------------------------------------
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------------------------------------------------------------------TAGTGAGCTCTCGC
ATTGCTAGTGCTAGCCAAGCACTGCTCACGGGTAGTCCTGGCCATCTCAGGCCCGGCCCTGTCGGCCCACCCAGGCCCGA
CCCTAAAATCCAGGACCTAGGCCCGATGAGTTTGTCCATGGGCCGGGCTTGGGCCTGAGTTTTGAGCCCATCAACAGGGC
CTGGACGGGCATGTGCTTGACATATTGGCATTTTAAGGAAGAGGCCCGGCCCACAGCCCTAAGCCCTAAGGGTTTTTCAG
GGCTTTTTACGAGATGGGCCGGGCTTGGGCTTGAAAAGTAGGCCCGATGGTAAGGCCTGGGAGGGCCTGGGCCTCAGTTT
TCTGCCATGGGCTTTTTTAGGCCCGGCCCGGCCCATGGCCAGATATACTCACGGGCTCATGGATGGCGATCCGATGACTG
GCACGCCAAGAGAGCAAACAACACATGGTTAGTCACACGGATCGCGATCCGTGGCCAACCT-CCTAGCGCACATCGCCAC
CGTCCAACGCTCCCTAATCCAGCGGCTGACCCAGGCCCGCGTTCCTCCGGTGCCGTGGCGCGATGAGGCTTCCCAAAATC
CCCAAAATTTCATGCTATGCGCCGCGCCGCGCCCGCCGACCAATTCCGCGCCCCTACTTAACCCCGGCGAACCCGTCCCA
------AGATCCTCAGACCACCGCGCCGAACAACTCTCTCGCCAGCACGCAGCAAACTCCCCAGCCTTCCCTCGCCCCGG
ATCCGT-AAATGGCCCGCACGAAGCAGACCGCGCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCGACCAA
GGCGGCGCGCAAGTCGGCGCCGGCGACGGGA-GCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGCG
AGATCCGCAAGTACCAAAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTCGTCCGGGAGATCGCGCAT
GACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCCCTGCAGGAGGCCGCCGAGGCCTACCTCGTGGGGCT
CTTCGAGGACACCAACCTCTGCGCCATCCACGTCAAACGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCA
TCCGCGGGGAGCGCGCGTAGGCGCCCTCTCGCTCCTGCTTGGTCCCTTGAGGCCTCATCGTGCCATGATCTAGCCGTGCT
GTAGTTTTTAGTATGTGCAATGGATGTATCATGTGTTCTCTAAGTTATTATATGAATGAAAAGTACGCAGCTCTGTTTAC
CTTTCTCTCTGCTTAATCATATGTTCAGAATTGTTGATGTTGTTTGGGCAATGGGAACTGAACAATCTGCACCTGAACAA
T-AGTCGCTACTAAAATTTGCATAAACA---GGAATCCTCCAATCTCTATCCATCTAGATCTGGGAAACAATCCG--GCC
GTCAGCACGTAAGCCGACGGTAGAAGCCGCCCCAAATTCCATCCGGCAAGCGAAGCGAAACAATTCGGGTCTGCGGCTCG
ACGTTTCCCAGCTCGCCCGAGGAAGCGGGAGACGTGCTCATGCGCATATCGTTCTGCCGCGCGACTGGTCCAAGATGCGG
GAGGACATGCTCGTGCACATATCGGGCTGCTGGAACCCCGGAGCTTGGCCGTTCAGG----------CGAGATAGGCGCG
CGACTGGTCGCGATATTAGCTCCAGAG---------ATGATGGATGTATGGTAG----------------------TACC
AGTTTAATCAATTTATCATTTT-CTAGTTCAGTGGTAAATTGGCCCCATCTTGTTTGGTT-CAAGGTACAAATTGTTGCA
TCAGCTTATTTGTGGTGCTCAGAGCATTTTCAGCAGCTTCCCCACAAAAAAAAAACT------CCCCTACATATGAATCC
CTGAAGGGTCGTCATTGATTTAACTAGTTTTGGAAAGGAAAACGCTTAGAGCCGGAGCGCTACTTTGTCCCTGTTTTGCG
CCGGCGCCATGCTTCTCCCTCCTCGCAGCAAACCACGACGAGGACCGCCCAAAATAGATCACTGTGCGGAGGTGCCTTGC
TGCTGCAAGCTCCATGGCCAGATTTATCTGCTTAGCGCAGGCCATGGCCGAATTCGAGCCATTTAGGAAAGGGATTTTTT
TTGCGCCATGGACGAGTTGCTAGTGACGTTAATGG
>chr3D_124
AAAACAAT------------------------------------------------------------------------
---------------------------------------------------TTATATGGTTTGGAGGGAAATTATATCCC
AACATACAAAAAATTGAATAAAGGCAAAAAGATATAGTCATCGCAGTCGAACGTCCGGAAATTGGAATGAAGATGAAAAA
TACCTACTAAATAATTGAGATCCCTAAATAATTCAACAGGAATCACAATGGGAGATCGGCCGGCAAGAAAATTTGAGTGA
AACAAATTGAAATTAGTCATATGGAATATACGTAGCAAATATGTTCATCGCC----------------------------
----------------------------------------------------------------------GCTGC-AAAA
AAAATGTTTTCTTTAATCATCACCTA------------------------------------------------------
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--------------------------------------------------------------------GTGAGCTCTCGC
ATTGCTAGTGCTAGCCAAACACTGCTCACA--------------------------------------------------
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----------------------------------------------------GGGCTCATGGATGGCGATCCGACGGCTG
CCACGCCAAGAGGGCAAACAGCACAGCGATAATCCCACGGATCGCGATCCGTGGCCAACCTTCCTAACACACATCGCCAC
CGTCCAATCCTCCGTAGTCCAGCGGCTGACCCAGGCCCGCGTTCCTCCGGTGCCGTGGCGCGCTGAGGCTCCCCAAAATC
CCCAAAATTTCATGGTACGCGC------GCGCCCGCCGGCCAAACC--CGCCCCTACTTAACCCCGGCGAACCCCCCACA
GATGACAGATCACCAGACCACCGCGCCGAACAACTCTCACCGGA--ACGCAGCAAATTCCCCAGCCTTCCCTCGACCCAG
ATCCGCAAAATGGCCCGCACGAAGCAGACCGCGCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCGACCAA
GGCGGCGCGCAAGTCGGCGCCGGCGACCGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGCG
AGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTCGTCCGGGAGATCGCGCAG
GACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTGTCCGCCCTGCAGGAGGCCGCCGAGGCCTACCTCGTGGGGCT
CTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGTGTCACCATCATGACCAAGGACATCCAGCTCGCCCGCCGCA
TCCGCGGGGAGCGCGCGTAGGCGCCCTCTCGCTCCTGCTTGATCTCTTCATGCCTCATCGTGCCATGATCTAGCCGTGCT
GTAGTTTTTAGTATGTGCAATGGATGTATGAAT------------------------GAAAAGTATGCATATCTGTTTAC
CTTTCTCTCTGCTTAATCATATGTTCAGAATTGTTGGTGTTGTTTGGGCAATGGGAACTGAACAATCTGCACTTGAAACC
GGAGTTGCTCCTAAAATTTGGATAAACAACAGGA-TCTTCCAATCTCGATCC---TAGACATGGGAAACAATCCGGTGTC
GCCAGCACGTAAGCCGACGGTAGAAGACGCCCCAAATTCCATCCGGCAGGCGAAGCGAAATAATTCGGATGCGCGGCTCG
CCGTTTCCCAGCTCGCCCGAGGAAGCCGAAGACGTGCTCATGCGCGTATCGTTCTGCCGCGCGACTGCTCCAAGATGCGG
GAGGACATGCTCGTGCGCATATCGGGCTGCTGGAACCCCGGAACTCGGCCGTTCAGGCGCCCTCAGACGAGATAGACGCG
CGACTGGTCGCGATATTAGCTCCAGATGCTGTCTTCATGATGGATGAATGGTAG----------------------TACC
AGTTTAACCAATTTATCATTTT-CTAGTTCAGTGGTAAATTAGCCCCATCTGGTTTGGTTC-AAGGTACACA---TTGCG
TCAGCTTGTTTGTGGTGCTCAGAGCATTTTCAGCAGCTTCCCCACAAAAAAGAAAAAATTCTCCCCCTACAGATGAATCC
ATGGAGGGTCATCATTGAATTGACTAGTTTTGGAAATGA-----------------------------------------
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>chr3B_301
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-------------------------------------------------------------------------------A
AACAAGCTGAAATTAGTCGTATGGAAAATACTACTCCCTTGGATCGGAAATTATATCTCCAAAAAAAGAAATGTTTTCCT
TACCTTTATCGAAAAAAAAAACTAAAATTAGTCGTATGAAAAATACTACTCCCTTGGATCGGAAATAAATGCTCC-AAAA
AAAATGTTTTCCTTAATCATGACCTATACCTGGCCAAACCTCGGGCCGGGCCGGGTTTCGGGCCGGGCGTAGCCAAGCCC
GACACAAAAAACTCAGGCCCGGCCCCGGCCCGGCCCGACCATCGGGCCTGTGTTTCTGGGCCCGAGCCCGGCCCAACCTT
CAGAAAATGGCAAAAACGACGGGCCCGGGCCTGGCCCGACCTTCGGGCTCAAAAACTAGGCCCGAGCCCGGCCCGGGGGT
AGCGTCGGGCCAGGCCGGGTCGGGCTTTTTCGGTCCGGGCCGGGCCGGGTCGGGCTGGGCCGGACATAGTGAGCTCTCGC
ATTGGTAGTGCTAGCCGAGCAATGCTAGACTTACAGACATATCTCTGCCGGGGAGATGTTACGGACTCATGTGTCAAAAT
ATGGTTGGAGAAGATTAGGGGGAAGGGGGCCCAGCGGTGAAAATCAGGAGGGGGGTTGGCGAGCAAGGGGTCCGTAAGAC
CAGCCCGTAACAGCTTTCCGTTAGTGTAGCATTTTTGGTGCTAGCCAAGCACTGCA------------------------
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-------------------------------------------------CACGGGCTCATGGATGACGATCCGACGGCTG
GCACGCCAAGAGAGCAAACAGCACACGGTTAGTCACACGGATCGCGATCGATGGCCAACCTTCC-AGCGCACATCGTCAC
CGTCCAACCTTCCCTAATCCAGCGGCTGACCCAGCCCCGCGTTCCTCCGGTGCCGCGGCGCGATGAGGCTTCCCCAAATC
CCCAAGATTTCATGGTACGCGC------GCGCCCGCCGGCCAAATCCGTGCCCCTACTTAACCCCGGCGAACCCCTCCCA
------AGATCCTCAAACCACCGCGCCG---AACTCTCTCGCCACCGCGCAGCAAACTCCCCAGCCTTCCCTCGCCCCAG
ATCCGC-AAATGGCCCGCACGAAGCAGACCGCGCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCGACCAA
GGCGGCGCGCAAGTCGGCGCCGGCGACGGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGCGCTCCGCG
AGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGGGAGATCGCGCAG
GACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCTCTGCAGGAGGCCGCCGAGGCCTACCTCGTGGGGCT
CTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCA
TCCGCGGGGAGCGCGCGTAGACGCCCTCTCGCTCCTGCGT-------------CTCATCGTGTCATGATCTAGCCGTGCT
GTAGTTTTTAGTATGTGCAATGGATGTATCAATTGTTCTCTAAGTTATTATATGGATGAAAA------AGCTCTGTTTAC
CTTTCTCTCTGCTTAATCATCTGTTCAGAATTGTTGATGTTGTTTGGGCATTGGGAACTGAACAATCTGCATCTG-AACC
GGAGTTGCTCCTAGAATTTGCATAAACAACAGGAATCTTCCAATCTCCATCCACCTAGACCTGGGAAACAAACCGGCGCC
GCCACCACGTAAGCCGACGGTAGAAGACGCCACAAATTCCATCCGGCAGGCGAAGCGAAACAATTCCGATGCGCGGCTCG
CCGTTTCCCAGCTCGCCCGAGGAAGCCGGAGACGTGCTCATGCGCATATCGTTCTGCCGCGCGACTGCTCCAAGATGCAG
GAG--------------CATATCGGCCTGCTGGAACCCCGGAGCTCGCCTGTTCAGGCGCGCTCGGACGAGATAGGCGCG
CGACTGGTCGCGATATTAGCTCCAGATGCTGTCTTCATGATGGATGAATGGTAGAACTCGAGCGATAAGTGGCCTTTACC
AGTTTAAACGATTTATCATTTTTCTAGTTAAGTGTTAAATTGGCCCTATCCGGTTTGGTTCCAAGGTACACATTGTTGCG
TCAGCTTATTTGTGGTGCAGAGAGCATTTTCAGCAGCTTCCTCACCAAAAAAAAAAA---CTCCCTCTACAGACAAATCC
ATGGAGGGTCATCATTGAATTGAGTAGTATTT------------------------------------------------
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-----------------------------------
>SNPs
SS--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-------S-S--S---
----------SSSS------S--------------------S---S---------SS------S--------S--S----
S---S------------------------------S-------------S--S------S-S------------------
---------------------------------------SSSSS--S---------------------------------
--------------------------------------------------------------------S-----SS----
----S-----------S----S----------------------------------------------------------
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-----------------------------SSSSSSSS-SSSS-SSSS-S--SSS-SSSS-SSS-S-S--SSSSSSSSSSS
SSSSSSSSSSS--SSSSSS--SSS-SS-SSSSS-SSSSSSSSSSSS-SSS---SS-SS-SSSSS-SSSSS--SSS-S-S-
-S-SS--SSSSS-SSS-SSSSSSS-SSSSSS---SS--SSSSS---SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S-S---
--------------------S----S------------------------------------------------------
--------S-----------------------------------------------------------------------
--------------S--S----SSSSSS----------S----S------------------------------S-----
--------------------------------------------S---------------------------------S-
-----S--------------------------------------------------------------------------
------------------------------S-------------------------------------------------
----------------S--------S-----------------------------------------------------S
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--------------------------------S---S-------------------------------------------
-----------------------------------------S--S---S-S-----------------------------
-------------------------------SS---------------------S----------S--------------
-----------------------------------------------------------------------------SSS
S----S---S---------------------------S---------S-----S-----S--------------------
-S------------------------S---------------------S-------------------S-SS--------
S-------------------------S----------------------------------------S------------
----------------S----------------------------S----------------------------------
--------------------------S-------------------S---------------------------------
-------S-------------------------------------------S------------------S--------S
-------------------------------------------------------SS--------------S--------
S--S------S-------S--S--------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_984
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----ACGGGCATGTGCTTGACATA--------------------------------------------------------
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>reverse_2775
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------------------------------------------------------GAGCGCTACTTTGTCCCTGT------
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-----------------------------------
