>input_sequence_75882
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-----------------------------------------------------------ATGACTTCCTCCTGGATGTTG
CTTTCCCTCGTCTTCCTTCTGGCTACCTCGTCGGCGCGCGCCGGCGGGTTCAAGCACATCCACCTGTACATGCACGAGAC
CTTCACGGGCCCGAACGCCACGCTGTTTTCAGTGGTGCCGCCCCTGCACCG---GGGCGACAACGCAAG---GTTTGGGA
TGGTCGGAGTGCTCGACGACGAGCTGCGCGACGGCCCGGGCCCGAGAAACTCGTCGCTGGTCGGCCGGTTCCAGTCCCTC
TTCGCCTTCGCGGGGCTGGTGACGCCGCCGGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCCGGGCAGAACGCCGG
GAGCACGCTGGTCATGGTGGGCAGCATCGTGAGCTCCGAGGGCCCCTACGAGACCGCCCTGGTGGGCGGCACCGGCGCGT
TCAGGATGGCGCGCGGGTACTGCGTTCTGAAGGCCGTATGGAGCCCGACGCCGGAGTCCACCGTGTACGAGGTAAACCTG
TTGTTGAAGCTGGGAGGAAACCTGTTGGCAAAGATGGATGCCTGGAAACG---TACGTATGCACTGTGA-----------
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>chr1A_1_TraesCS1A01G018300
GACTGACTGTTCCTACTAAATTCTTCCTACGTTCTTTCATCTGTTCTGTGGCCGTGTGCTTCCAGGAGCTAACACAGATA
CTAGATGTGCTTTCATCTTGGAGGGGCCTTCATGCAACCATGGCGCAGGAACCTTTTGTTGTATCTGTTCACTAGATGTA
CTATTCTTTCACTCTGATCTGGAAAACCAGATCCTACGGTTTTCCCCGGAGCAGCACTAGTGGGTCGACAGTAGTTATAG
GACGATGCCTTCATCAAAGTAA----------CGGCGCAGAATGCCGTCATCGTCCGCCACCGGCTTTGTTTTCACCCGC
AACTATGTCTCCCCGACTCGCAACCAGGACTAGATTTCAGATCTCGAGATCC------------AATCACCCAGCCATAG
GTCGACCACCTCCGATGTAGGAGATGACCACCACCGCC------------------------------------------
---GTCGCCGAATCA-ATGAGATGCATCAGTTTGAGGACGTAACGGCAGCCGCTCGCCTAGACCCGAAGGTCCTAGATCG
AGCTCGGGACGCGCCCCGGCCGCCGCCGCCGCCGCCACCTCTTCCTAATCCC-CCGGCTGCAGCCAAGCCCCCCGTCGCG
CACCG---GCCACCGCTGCCCGCCATCCTCGTCGCAA-GGAGATCCAAGTTAGGCTGCCGCCGCTTCGGATCTCGGGACG
CCAGAGGTGGTACGCCGCCGCCGCGCCACAGGGCCTGCGCCCAGCAACGTTGCCGGCGGCGGCGGAAGGAGGGAGA---T
GCGCGGTTCCACTATGGCCAGTCTTATCTCAATATCTTGATGAGGCCACATTCTTTTCCAGTACAATTAATTATTGGGAC
CGAGGTA---TTTGTACTGATGGCGCTGCACTGTTTGATTTAAATGGTCACCTAATAATACTCC----TATATATGTGGT
GGTTGGAATGTCTAACAATTGAGATCCTCGTGCATTATTTTTCAATTCATGCC----------------TAGAATAAAGA
TAGAGCAAGCTTTAGCGGCGAGCCCCTACATACACAGTGCACATGTTGGTCTGATCGCCATGACTTCCTCCTGGATGTTG
CTTTCCCTCGTCTTCCTTCTGGCTACCTCGTCGGCGCGCGCCGGCGGGTTCAAGCACATCCACCTGTACATGCACGAGAC
CTTCACGGGCCCGAACGCCACGCTGTTTTCAGTGGTGCCGCCCCTGCACCG---GGGCGACAACGCAAG---GTTTGGGA
TGGTCGGAGTGCTCGACGACGAGCTGCGCGACGGCCCGGGCCCGAGAAACTCGTCGCTGGTCGGCCGGTTCCAGTCCCTC
TTCGCCTTCGCGGGGCTGGTGACGCCGCCGGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCCGGGCAGAACGCCGG
GAGCACGCTGGTCATGGTGGGCAGCATCGTGAGCTCCGAGGGCCCCTACGAGACCGCCCTGGTGGGCGGCACCGGCGCGT
TCAGGATGGCGCGCGGGTACTGCGTTCTGAAGGCCGTATGGAGCCCGACGCCGGAGTCCACCGTGTACGAGGTAAACCTG
TTGTTGAAGCTGGGAGGAAACCTGTTGGCAAAGATGGATGCCTGGAAACG---TACGTATGCACTGTGAAATCTTCAACT
GTTAATTGTTATCTGATCAATCCCCGGAGCTTGAGGCCTTCTAAGCTCAGTGTATCATTGTTCCCTGGTATAAGCTCGCT
GTTCCTGCTGAACCCCTCTAGATCTACTGATCAGTTTTTCATTTAATTTAGGTCTTCTTCAAAGTATTTAGAGGGTGTTT
GGATACTCTCTAGTCATGTGACTAGTAGTAGTCAGACTAGAAGTTTTTAGTCAGGTCCTGTTTGGAAAGTGACTACTACT
AGTCAGCATTAAATGTCTCAGTATTAAATGTCCCTTGTGCAACACCAATTAGAGGAGAGAGAAGGGGATTTTAGTCAGTA
AAAGTCAGGGGTGTTTGGAGGTTTACTGACTAAAGGTGACTACTACTAGTCTCTAGTCAGTAAAAGTTGGGGATGGGGTG
ACTAGGGACTAAACTAGTTTTGGTCACCCACTAGTCAGGGGTGTTTGGAGGTTTACTGACTAAATGTGACTACTACTAGT
CTCTAGTCTCTAGTTTCTAGTCTCTAGTGATTCAAACACCCTCTTAGTAACTTCCTGTTAATTCATATGTTCCCAAGAGA
TTATTATTTTTATACTATATACTGCTTCAAGTTGTGTGACGTCGGTAACATGCTTCATTTTTTTCATCTTTTTTACTCCT
GTTCCTCGGAACACTGCAAATGACCAATTATAGATCCTCGTATTCAAGCAAAGGACTCCAACCTTAGTGTTGGGATTGTA
CATCCTACTCCCCCATTTGTCGATTGAGCTAGTCTCTTAATTAGCCCGATGGTGCTTCCTCCGTCCCGAAAAACATGTCG
CGGGCGCAGTTCATTCGTGATTTTACAAAAAAGCCTTCCTAGTTTCAAAACGATCTGAAACAACTCCCTCCGCCCCCGTC
TTCTTCCTCCGTCGTCGCCACGGGCTGGCGCCGCCCAGCTGAGCGATTTGCCGCACAGCAGGAAGTGCTCCGCCGCCGTC
GCCACGTACCTGCTCCACCTCCGCCGCCG
>chr1D_1
GACTGACTGTTCCTACTAAATCCTTCCTACGTTATTTCATCTGTTCTGTGGCCGTGTGCTTCCAGGAGTTAACA--GATA
CTAGATGTGCTTTCATCTTGGAGGGGCCTTCATGCAACCATGGCTCAGGAACCTTTTGTTGTATCTGTTCACTAGATGTA
TTATTCTTTCACTCTGATCTGGAAAACCAGATCCTAGGATTTCCCCCGGAGCAGCACGAGTGAGTCGACAGTAGTTATAG
GACGATGCCTTCATCAAAGTAA----------C----------GCCGTCATCGTCCGCCGTCGGCTCGGTTTTCACCGGC
AACTATGTCTTCCCGACTCGCAACCGGGACTAGATTTCAGATCTCGAGATCC------------GATCACCCAGCCTCGG
GTCTACCACCTCCGACGTAGGAGAGGACCACCACCGCCATTATCCTCGTGATGCGATGGAGACCCGGAGTGCTTCAGCGA
GCCGTCG-CGAATCCGATGAGATGCAGCAGTTTGAGGACGTAACGGCAGCCTCCTGCCTAGACCCGAAGGTCCTAGATCG
AGCTCGGGACGCGCCCCG---GCCACCGCTGCCGCCACCTCTTCCTAATCCCGCCGGCTGCAGCCAAGCCCCCCGTCGCG
CACCG---GCC---GCTGCCCGCCATCTTCGTCGCAA-GGAGATCCAAGTCAAGCTGCCGCCGCTTCAGATCTCGGGACG
CCAGAGGTGGTACGCCGCCGGCGCGCTGCAGGGCCTGTGCCCAGCGACGTTGCCGGCGGCGGCGGAAAGAGGGAGA---T
GCGCGGTTCCACTATGGCCAGTCTTATCTCAATATCTTGATGAGGTCACATACTTTTCCAGTACAACTAATTATTGAGAC
CGAGCTAGCTTTTGTACTGATGGCGCTGTACTGTTTGATTTAAATGGTCACCTAATAATACTCC----TATATATGTGGT
GGTTGGAATGTCTAACAATAGAGATCCTCGTGCATTATTTTTTAATTCTTGCCTAGTGTGCAATCTATATAGAATAAATA
TAGAGCAAGCTTTAGCTGCGAGCCCCTACATACACAGCGCACACGTTGGTCTGATCGCCATGACTTCCTGCTGGATGTTG
CTTTCCCTCGTCTTCCTCCTGGCTACCTCGTCGGCGCGCGCCGGCGGGTTCAAGCACATCCACCTGTACATGCACGAGAC
CTTCACGGGCCCGAACGCCACGCTGTTTTCGGTGGTGCCGCCCCTGCACCG---GGGCGACAACGCAAG---GTTCGGGA
TGGTCGGAGTGCTCGACGATGAGCTGCGCGACGGCCCGGACCCGAGAAACTCATCGCTGATCGGCCGGTTCCAGTCCCTC
TTCGCCTTCGCGGGGCTGGTGACGCCGCCGGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCCGGGGAGCACGCCGG
GAGCATGCTGGTCATGGTGGGCAGCATCGTGAGCTCCGAGGGGCCCTACGAGACCGCGGTGGTGGGTGGCACCGGCACGT
TCAGGATGGCGCGCGGGTACTGCGTTCTGAAGGCCGTGTGGAGCCCGACGCCGGAGTCCACCGTGTACGAGGTAAACCTG
TTGTTGAAGATGGGGGGAAGCCTGTTGGCGAAGATGGATGCCTGGAAACG---TACGTATGCACTGTGAAATCTTCAACT
GTTAATTGTTACTG------------------------------------------------------------------
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>chr1D_1
GACTGACTGTTCCTACTAAATTCTTCCTACGTTCTTTCATCTGTTCTGTGACCGTGTGCTTCTAGGAGTTAACAA--ATA
CTAGATGTGCTTTCATCTTGGAGGGGCCTTCATGCAACCATGGCGCAGGAACCTTTTGTTGTATCTGTTCACTGGATGTA
CTATTCTTTCACTCCGATCTGGAAAACCAGATCTTAGGGTTTCCCCCAGAGCAGCACGAGTGAGTCGACAGTAGTTATAG
GACAATGCCTTCCTCAAAGTAA----------CGGCGCAGAACACCGTCATCGTCCGTCGTCGGCTCGGTTCTCACCGGC
AACTATGTCTCCCCGACTCGCAACCGGGACTAGATTTCACATCTCGAGATCCGATGTAGGAGATGACCACCCAGCCTCAG
GTCGACCACCTCCGATGTAGGAGATGACCACCACCGCCATTATCCTCGTGTTGCGATGCAAACCCGGAGTACTTCAGCGA
GCCGTCACCGAATCCGATGAGATGCAGCAATTTGAGGACGTAATGGCAGCCTCCCGCCTAGACCCGAAGGTCCTAGATCA
AGCTCGGGACGCGCCCCG---GCCACCGCTGCCGCCACCTCTTGCTAATCCCCCCGGCTGCAGCCAAGCGCCCCATCGCG
CACCGGCCGCC---GCTGCCCGCCATCCTCATCGCAA-GGAGATCCAAGTCAGGCTGCCGCCGCTTCAAATCTCGGGGCG
CCAGAGGTGGTATGCCGCCCCCGCGCCACAGGGCCTGTGCCCAGCGACGTTGCCGGCGGCGGCGGCGGCAGGAGGGAGTT
GTGCGGTTCCACTATGGCCAGTCTTATCTCAATATCTTGATGAGGCCACATACTTTTCCGGTACAACTAATTATTGGGAC
CGAGCTAGCTTTTGTACTGATGGAGCTGTACTGTTTGATTTGAATGGTTACCTA-TAATACTCCTATATATATATGTGGT
GGTTGGAATGTCTAACAGTGGA---------GCATTATTTTTTAATTCATGCCTAGTGTGAAATCTATATAGAATAAAGA
TAGAGCAAGCTTTAGCTGCGAGCCCCTACATACACCGTGCACACGTTGGTCTGATCGCCATGACTTCCTCCTATATGTTG
CTTTCCCTCGTCTTCCTCCTGGCTACCTCGTCGGCGCGCGCCGGCGGGTTCAAGCACCTCCACCTGTACATGCACGAGAC
CTTCACGGGCCCAAACGCCACGTTGTTTTCGGTGGTGCCGCCCCTGCACCG---GGGCGACAACGCAAG---GTTCGGGA
TGGTTGGAGTGCTCGACGACGAGCTGCGCGACGGCCCGGACCCGAGAAACTCGTCTCTGGTCGGCCGGTTCCAGTCCCTC
TTCGCCTTCGCGGGGCTAGTGACGCCGCCGGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCCGGGGAGCACGCCGG
GAGCACGCTGGTCATGGTGGGCAGCATCGTGAGCTCCGAGGGCCCCTACGAGACCGCCGTGGTGGGCGGCACCGGCGCGT
TTAGGATGGCGCGCGGGTACTGCGTTCTGACGGCCGTGTGGAGCCCGACGCCGGAGTCCACCGTGTACGAGGTAAACCTG
TTGTTGAAGCTGGGAGGAAACCTGTTGGCAAAGATGGACGCCTGGAAACG---TACGTATGCACTGTGAAATGTTCAACT
GTTAAATGTTACTG------------------------------------------------------------------
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>chr3B_173
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------------TCTGATCTGAAAAACCAGATCCTAGGGTTTCCCCCGGAGCAGCACGAGTGGGTCGACAGTAGTTACAG
GACGATGCCTTCATCAAGGTAATGGCGTAGAAC----------GCCACCATCATCCGCCGTCGGCTCGGTTTTCACCGAC
ACCTATGTCTCCCCGACTCGCAACCAGGACTAGATTACAGATCTCGAGATCC------------TGTCACCTAGCCTCAG
GTCGACCACCTCCGACGTAGGAGATGACCACCACCGCCATAACCCTCATGATGCGATGCAGATCCGGAGTGCTTCAGCGA
GACGTCGTCGAATCTGATGAGATGCAGCAGTTTGAGGACGTA------GCC-----------------------------
----TGGGACGCGCCCCG---ACCGCCGTTGCCACCATCTCCTATTAATCCCGCCGACTGCAGTCAAGCCCCCCATCATG
CCCCGGCCGCC---GCTGCCTGCCATCCTCGTTGGGAGGGAGATCCAAATCAGGCCGCCGCCGCCTCAGATCTCGAGACG
CTAGAGGAGGTCCGTCGCCGCCGCGCCGCAGGGCCTTCGCCCAGCGACATTACCGGCGGCGGCGGAGGGAGGGGATGCGC
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>chr7B_173
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------------TCCGATCTGGAAAACCAGATCATAGGGTTTCCCCCGGAGCAGCACGAGTGGGTCGACAGTAGTTATAG
AACGATGCCTTCATCAAAGTAA----------CGGCGCAGAACGCCGCCATCGTCCGCCATCGGCTCGGTTTTCACCGGC
AACTATGTCTCCCCGACTCGTAGCCAGGACTAGATTACAGATCTCGAGATCCGAT------------CATCCAGTCTCAG
GTCGACCACCTCCGACGTAGGAGATGACCACCACCGCCATAATCCTCGTGATGCGATGCAAACCCGGAGTGCTTTAGCGA
GCCGTCGCCGAATCCGATGAGATGCAGCGGTTTGAGGACGTAACGGCAGCC-----------------------------
----CGGGACGCGCCCCG---GCCGCCGCCGCCGCCATCTCGTACTACTCCCGCCGGGTGCAGCCAAACCCCCCGTCGCG
CCCCGGCCGCC---GCTGCCCGCCATCCTCGTCGGGAGGGAGATCCAAATCAGGCCGTCGCCGCCTCAGATCTCAGGACG
CCAGAGGAGGTCCGCCGCCGCCGCGCCACGGGGCCTTCGCCCAGCGACGTTGCCGGCGGCGGTGGAGGGAGGGGGG---T
GCACGG--------------------------------------------------------------------------
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>chr4A_173
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------------TCTGATCTGGAAAATCAGATCCTGGGGTTTCCCCCGGAGCAGCACGAGTGGGTCGACAATAGTTAGAG
AACGATGCCTTCATCAATGTAA----------CGGCGCAGAACGCCGCCATCGTCCGCCGTCGGCTCGGTTTTCACCGGC
AACTATGTCTCCCCAACTCGCAGCCGGGACTAGATTATAGATCTCGAGATCCGAT------------CATCCAGTCTCAG
GTCGACCACCTCCGATGTAGGAGATGACCACCACCACCATAGTCCTCGTGATGTGATGCAGACCCGGAGTGCTTCAGCGA
GCTGTCGCCGAATCCGATGAGATGCAGCAATTTGAGGACGTAACGGCAGCCACCCGCCTAGACCCGAAGGTCCTAGATCG
AGCCCGGGACGCGCCCCA---GCCGCCGCTGCCGCCATCTCGTACTACTCCCGCCGGCTGCAGCCAAACCCCCCGCCGCG
CCCCGGCCGCC---GCTGCCCGCCATCCTCATCGGGAGGGAGATCCAAATCAGGTCGCCGCCACCTCAGATCTCGGGACG
CCAGAGGAGGTCCGCCGCTGCCGTGCCACGGGGCCTTCGCCCAGCGACGTTGCCGGCGGCGGCGAAGGGAGGAGGA---T
GCACGG--------------------------------------------------------------------------
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>chr1D_176
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---------------GATCTGGAAAACCAGATCATAGGGTTTCCCCCGGAGCAGCACGAGTGGGTCGACAGTAGTTACAG
AACGATGCCTTCATCAAGGTAA----------CAGCGCAGAACACCGCCATCGTCCGCCATCGGCTCGGTTTTCACCGGC
AACTATGTATCCCCGACTCGCAGTCGGGACTAGATTATAGATCTCGAGATCCGAT------------CATCCAGTCTCAG
GTCGACCACCTCCGATGTAGGAGATGGCCACCACCGCCATAATCCTCGTGATGCGATGCAGACCCGGAGTGCTTCAGCGA
GCCGTCGCCGAATCCGATGAGATGCAGCAGTTTGAGGACGTAACGGCAGCCGCCCGCCTAGACCCGAAGGTCCTAGATCG
AGCCCGGGACACGCCCCG---GCCGCTGCTGCCGCCATCTCGTACTACTCCCACAGGCTGCAGCCAAGCCCCCCGTCGCG
CCCCGGCCGCC---GTTACCCGCCATCCTTGTCGGGAGGGAGATCCAAATCAGGCAGCTGCCG-CTCAGATCTCGCGACG
CCAGAGGAGGTCCGCCGCCGACGTGCCACGGGGCCTTCGCCCAGCGACATTGCCGGCGGCGGCGGAGGGAGGGGGA---T
GCACGG--------------------------------------------------------------------------
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>chr3B_1060
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--------------------------------------CGGCGGCGGGCTCAAGCACATCCACCTGTACATGCACGAGAC
CTTCACGGGCCCGAACGCCACGCTGTTTGCGGTGGTGCCGCCCCTGCTGGGCGTGGGCGACAACACCAGCATGTTCGGGA
TGGTCGGAGTGCTGGACGACGAGCTACGCGACGGCTCAGACCCGAGCAACTCATCGCTGGTGGGGCGGTTCCAGTCCCTC
TTCGCCTTCGCGGGGCTGGTGACGCCACCAGGCATGCAGACGGCGACCAGCCTCGTGTTCACGGCCGGGGAGCACGCCGG
GAGCACGCTGGTTATGGTGGGCAGCATCGTAAGCTCAGAGGGGCCCTACGAGACCGCCGTGGTGGGCGGCACCGGCGCCT
TCAGGATGGCGCGCGGGTACTGCGTTCTCAAGGCCGTGTGGAGCCCGACGCCGGTGTCCACCGTTTACGAGGTAAACCTG
TTGGTGAAGATGGAGGGAAAACTTTTGGCCAAGATGGATGCCTGGAAACGTACTACGTATGCACTGTGAAAT--------
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>SNPs
--------------------------------------------------------------------S-----SS----
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------------------------------------S-----S--------------S----------------------
------------------------------------------S-----------------S-----SS---------S--
----------------------------------------------------------------S-----------SS--
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--------------S-----------S--------------------------S--------------------------
------------------SSS-----------------------------------------------------------
-----------SSS------------------------------------S----------------S------------
---------------------------------------------S----------------------------------
---------------------------------------------------S--------------S-------------
----S-----------------------S---------------------------------------------------
-------------------S----------------------S-------------------------------------
----------------S--------------------------S------------------------------------
-----------------S--------------------------------------------------------------
------------------------------S--------------------------------------------S----
---------------------------------------S----------------------------------------
---------------------------------------------------------------------S--S-------
----------------------------------------------------------S---------------------
-------------------------------------S------------------------------------------
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-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_318
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----------------------------------------------------------CACCGGCTTTGTTTTCACCC--
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>reverse_2071
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----------------------------------------------------------------------GGATGGGGTG
ACTAGGGACT----------------------------------------------------------------------
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