>input_sequence_75874
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-----------------------------------------------AATTCCACTTGAGATCGTCTCTTATCTTGCTCT
CTCTATCCCATATACTCTTACCAGCTAGGTAGCTAAGCTGCCCCTTGCAACCAA-CAATGGCGCCTTCACCGAGCTGGAG
TGCAGCTGTGTTGGCCGTGCTGCTGGTGGTCGTCCTGCTATTGGGGATGGGATGCCCGGCGGCCGCTGCGACGCCATGTA
CGGACTGCACAGCGCAGTGCAACTCAACATGCAGCGCCGCC---------GGGGCAAGGCCGTGCGGCGCCCACTGCAGC
CCGGCGCCGGGATGCCCGAGCTGCCTCGCCGCGTACCACGCCAAGTGCTTGCCGTATTGCGTGAGCGCGTGCAAAGCCCA
ATCACCTGCTGGGTACGACTGCCAAAGCGCGTGCAACAAGACACAGCTGTG---CAGCAGCTCGTGCAGCGCCGTCTGCG
GCGAGTCGCCGACGTGCAAGGCCTGCCAGGACAACTACTACCGTGGGTGCATATCCAGATGCACCTCCTACTGCAACTCC
CACTGCGTCTAGGTCTAGCAACGACTTTCGACACTCTACGGAGTACGTTTTCACGTAAAAAA------------------
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>chr6D_1_TraesCS6D01G001500
AGCCTTTGAGCAAGACTTCGGGCACATCCAGCATTGAGGCATTGTGCGACAAATTCGGGCACCATGCAAAGGCTCTTAGG
GAGATCACGAGACAACATGGAGGGTGATCTGGCTACTGATTGATGCATCATCCTTGTTTTTCTTGTTTTGTCTTTGGCTC
TTGAGTGGTTGGCCCTGTAGGGTTTGTATCGAACCATTTTTCTTGATGCCACATCGTTCATGTAAACACTTTAAGGGCTT
GGATCAGTTCACTGAAGCTGGGCAAGCGCCTTTTCTCTATAAAAAAGAAACAATGAACCTTTTTTTTTGCGGGTAAAAAA
AAAGAATGAATGAACCTGTGCATGGTATAGCCTCGTCATATTGGACCAGGAACCAGAAAATAGCTCGGCTCACCAACCCA
GGCCTGATATATATTACTTCCTTCGATCCAAAATAAGTGTCGTAGTTTTAAGGCATATGGCATCAGCACATTGTACAATG
AACACACACAAAAAAAAGCATGTTCTACAAACACTGGAACGTGCGGTAGCCATGGAGAAGATCGAGCATATAGTTTCATA
CAATACGTCTCTACAAACCTGGGGCAGCTCAAGCAGTCCGGTCAGACCTGACGTCAATAACCAGCAGCCAACATGATTTG
GAAATTAGAGGAAACGAGCAAGAAACCATGGGCCAGCTCAAGCAGTAGCCAACAAGATTAGAAACGGTAAGAATGGTTCC
CATGTTCAAGACCAACGAAGCCCAAGGGTTGTTACCGGCAACGAACTGCTACTACTAATTATAGGTCTTCCTCCCCACGG
ACGTCCACAAATCCCGAGAAACCACACCGGAATGGATGTCCAAACTAGCGCGACCCCGAAGCATATACTGTAAAAATCCA
TGGATAAATCCTTC--GGAAAAAATAT---GATGGATAGATACAAGGTCTATCTAGTTACGTATAGTACGTAATAACCTA
GCTGACGGCTATAAATTGACAGAACCGCTCTATCATAT--GGACAGCAATTCCACTTGAGATCGTCTCTTATCTTGCTCT
CTCTATCCCATATACTCTTACCAGCTAGGTAGCTAAGCTGCCCCTTGCAACCAA-CAATGGCGCCTTCACCGAGCTGGAG
TGCAGCTGTGTTGGCCGTGCTGCTGGTGGTCGTCCTGCTATTGGGGATGGGATGCCCGGCGGCCGCTGCGACGCCATGTA
CGGACTGCACAGCGCAGTGCAACTCAACATGCAGCGCCGCC---------GGGGCAAGGCCGTGCGGCGCCCACTGCAGC
CCGGCGCCGGGATGCCCGAGCTGCCTCGCCGCGTACCACGCCAAGTGCTTGCCGTATTGCGTGAGCGCGTGCAAAGCCCA
ATCACCTGCTGGGTACGACTGCCAAAGCGCGTGCAACAAGACACAGCTGTG---CAGCAGCTCGTGCAGCGCCGTCTGCG
GCGAGTCGCCGACGTGCAAGGCCTGCCAGGACAACTACTACCGTGGGTGCATATCCAGATGCACCTCCTACTGCAACTCC
CACTGCGTCTAGGTCTAGCAACGACTTTCGACACTCTACGGAGTACGTTTTCACGTAAAAAAGGATTCAGCG----CCTC
ACCA--------AGGAAAAACGTGTCACTGTAATTTTCTTCATCCAATAATCATAGGAGTGCTCATATATGTATCTGCCT
CCTTTTCTACTTTCCCGTTGGCATCGATCAGTTTTCGCACCATGGTTTTAATATTTCTTATTTAGATAATAGTTGGATTA
CTGGAAG-AAAAAAGTATCATATA----TTCTACTTGCTTATTTTTTTGGAGTATATTTATATTTTCTTTCTTCAGTATG
GAATCGAAATTAGCTATCCTTGTAGTAAATTGTTGGTAATGACCAAATCGTAGTCTTACATACCTTTAATCAACAACTTC
TCGAAGAATGAAGGCCTTGACAACTAAGTGTACCAACTAAGATAGAAGAATGTGTTCCTTATATCATAAGCAAAACGAAA
AGAGAAAGAAAAAAGATCTGTCAATTACACCACTAGTACATAAATTTAACTAGAGAAATCATTTTAGTGCTCAATCATGC
GGCATACATTCACAACTTGACTCGGGCGTGCATATACAATGCAAATGGTGTCTGATACAGACACATTGCTAATGAGGCGC
CAGCATAGCATGGGGCCCACTGCCAGCGATAGGACTGGGCGTCTGGCCTTTTTTTTGAGAAAACCGCCATTAACACTTTT
TTTGGTCAAAAAAACCTCCTGTTCTTTGCGAAGACCACCTTTGACATTTTTTCTAACAAAAAAGCATGTGTCCTACCCAT
CGGCGGTCTACAAAAATTTGTATGCATGGGCAATCGTACCCGGGACCTGCGGGACGCACGCAGACATGAACAACAAACCC
AGCCATGACCATTTTATGGATACTGGACCTTCATATACTTTCCAACAAATATGAACTTTATTTAAAATGAAGAAACTGAC
TTTGGGATAAAAAATTTGAACACGGCTTTGGGAATTGATATAGCGGTCTCATGCAAAACGGCACCCATGTGTGCCACTGA
ACCGAGGATGTTATTTAAACAATATTTACGTCTAGATTT
>chr6B_880
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-------------------------------------------------------------------------------A
TGGATAATTCCTTC--GGGGAAAAAAGATAGATGGATAGATACAAGGTGTATCTAGTTATGTACACCCTCCGTAACCTAA
TA--ATGACTATAAATAGCCAGGATCGCTCTATGATATACGGACACCACTTCCACTCGAGGTCGTCTCTTGTCTTGCTCT
CGG----CCATATATTCTTACTAGC----TAGCTAAGCTGCCCCTTGCAACTAACCAATGGCGCCTTCACCAAGTAGCAG
TGCAGCTGTGTTGGCCATGCTGGTGCTCCTCGTCCTGC---TGGGGATGGGATGCCCAGCGGCGGCGACGCCGGCATGTA
CGGACTGCACAGCGCAGTGCAACTCGACATGCAGCGCCGCCAACTTCGCCGGGGCGGGGCCTTGCGGCGCCGACTGCAGC
CGGTCGCAGGCATGCTTGGGCTGCCTCCAAGCGTACAAATGGAAGTGCTCGGTGCACTGCATCAGTTTTTGCAGAAGGCA
AACAAGTAGTGGATATGACTGTGAAGGCACTTGCGCAAGGTCTTGCAGCGACCTCACCGGCTCGT---GCGGCATCTGCG
CCGAGTCCCCGACGTGCACGGCCTGTAAGGCCAACTACTCCCATGGGTGCTCATCCTGCTGCACCTCTTACTGCAAGTTC
CACTGCGTCTAGCT------ATGACCTTCCCCACTCTAC----TTCGCTGGCACGTAACTAAGGATTCTGCT----ACTC
GGCACCTCACTGAGGACCAACATGTCAGTGTAATTTTCTTCAGCAAATAATCATAGGAGTGCATATATGTGTATGTGCCT
CCTTTTCTACTTCCCCGTTAGCATCGATCGGTTTGCATACCGTGCTTTTAA--TTTCTTATTTTGATAATAGTTTTGTTG
TTGGAAG-AAAAAAAATC---ATA----TTCTACTTGCTTATTTGTTTTGAGTATATTTGTATTTTCTTGCTTCAGTATG
G-------------------------------------------------------------------------------
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>chr6A_887
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------AATCCTTCAGGGAAAAAAAAT---GATGGGTAGATAGAAGGTCTATCTTGTTACGTAGTACGTC---------A
ACTGATGGCTATAAATTGCTCTATC-----------ATATGGACACCGCTTCCACTTGAGATCGTCTCTTGTCTTGCTCT
CTG----CCATATACTCGTACTAGCTAGGTAGCTAAGCTGCCCCTTGCAACTAACCAATGGCGCCTTCACCAAGTAGCAG
TGCAGTTGTGTTGGCCATGCTGGTGCTCCTCGTCCTGC---TGGGGATGGGATGCCCAGCCGCGGCGGCAACGGCGTGCA
CGGACTGCGTGTCGCAGTGCAACTCGACATGCAGTGCTGCCAACTTCGCCGGGGCGGGGCCTTGCGGCGCCGACTGCACC
CGGTCGCAGGCATGCTTGGGCTGCCTCGAAGCATACAAATCAAAGTGCTCGGGGCACTGCTACAGTTCTTGCAGACGCCA
AACAAGTAGTGGATATGACTGTGAAGGCTCTTGCGCAAGGTCTTGCAGCAACCTCACCGGCTGGT---GCGGCATCTGCG
CCGAGTCGCCGACGTGCACAGCCTGCAAGGCCAACTACTCGCGTGGGTGCACATCCTGCTGCACCTCTTACTGCAAGTGC
CACTGCGTCTAGCT------ATGACTTTCCCCACTCTAC----TTCGCTGGCACGTAACTAAGGATTCTGCTACTCACTC
GGCGCTTCACTGAGGACCAACATG-CAGTGTAATTTTCTTCAACAAATAATCATAGGAGTGCATAT--ATGTATGTGCCT
CCTTTTCTACTTTCCCGTTAGCATCGATCGGTTTGTATACCGTGCTTTTAA--TTTCTTATTTGGATAATAGTTTGATTA
CTGGAACAAAAAAATATC---ATA----TTCTACTTGCTTATTTATTTTGAGTATATTTATATTTTCTTGCTTCAGTATG
G-------------------------------------------------------------------------------
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>chr6B_1111
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------------------------------------------------------------------------------AG
TGCAGCTGTGTTGGCCATGCTGGTGCTCCTCGTCCTGC---TGGGGATGGGATGCCCAGCAGCCGCTGCGACGGCATGTA
CGGACTGCACAGCGCAGTGCAACTCGACCTGCAGCGCCGCCAACTTCGCTGGGGCGGGGCCTTGCGGCGCCGACTGCAGC
CGGTCGCAGGCATGCTTGGGCTGCCTCGAAGCGTACAAATGGAAGTGCTCGGTGCACTGCATCAGTTTTTGCAGAAGGCA
AACAAGTAGTGGATATGAATGTGAAGGCACTTGCGCAAGGTCTTGCAGCGACCTCACCGGCTCGT---GCGGCATCTGCG
CCGAGTCCCCGACGTGCACTGCCTGTAAGGCCAACTACTCCCGTGGGTGCTCATCCTGCTGCACCTCTTACTGCAAGTCC
CACTGTGTCTAGCT------ACGACCTTCCCCACTCTAT----TTCGCTGGCACGTAACTAAGGATTCTGCTACTCACTC
GGCGCCTCACTGAGGACAAACATGCCAGTGTAATTTTCTTCATCAAATAATCATAGGAGTCCATATATGTGTATGTGCCT
CCTTTTCTACTTTCCCGTTAGCATCGATCGGTTTGCATACCGTGCTTTTAA--TTTCTTATTTTGATAATAGTTTGGTTA
CTGGAAC-AAACAAACATCATATTCTATTTCTACTTGCTTATTTATTTTGAGTATATTTGTATTTTCTTGCTTCAGTATG
G-------------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
------------------------S--------------------------------------S-SSSSSSSSS-S-SS-
S----S------------S--------------S-----------S--S---------------------S---------
--SSSSS--------------S-----------------------------S-------------------S--SS-S--
----------------S-----S--S-SS---------SSS----------------S---------------S------
-------------------------S-----------------------------SS----S---------S--------
-S-S---S--S----SS-S---------SS------S-SS-S-------S-SS-S-S---S-S--SS-S----S-SS---
-S--SS-SS---S--S-----SS--S--S-S---SSS-S-S-SSSSSSSSS-----S-S------SSS---S-S------
S-----------------S-------S---S--------S-----------S----S-S--------S--------S---
------------S-SSSSSS---------SS--------SSSS-S--S-SS-------SS--------S--S----S---
SS--------------S----S-----S----------------S-----------------SS----------S-----
-------------------S---------S----S-SS---S--S------SS----------S----------S-----
--------------SS----------------------------S---S--------------------S----------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_840
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--------------------ACCACACCGGAATGGATGTC----------------------------------------
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>reverse_2142
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-------------------------------------------------------------CACATTGCTAATGAGGCGC
C-------------------------------------------------------------------------------
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