>input_sequence_75838
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------------------------------------------------ATGCCTAATCTGCTTGCAAGGCTCGGGAACGG
CGGGCGTGGAGCTTGCTACGGCGTCGTGGCGTCCTTGGCATTGGCGCTCGTGTTCTGCGTGCTCGTCGCCACCGTCAGCG
TCTGGAAGGCCTTCTTGTTCGCCGGCATGGCGTTGACCGCCTTCGGCATCGGTGAGTGCCTCGCGCCCAATAGCTGGCGC
GTCGGCGCCGCCGCCGAGCGTGAGATTACAGCAGGCGTGCCTT---TGGCAGCATGCCGGTTCGGGCTCGGGAAGGCCAC
GATCGACTCGTTGCCCACGTTCGCGTACGCATCCTGTGGCGCCGAT---GCCGATGCCGACCTCGAAT---------GCG
GTAGCGCCCAGCTGTGCTCTGTGTGCTTGGAAGACCTTGAGGACGGCGAGATGGTGCGGGAACTGCCGTCGTGCAAGCAC
ATCTTCCATGTCGAGTGCATTGACATGTGGCTGCACTCACACACCACTTGTCCTATCTGCCGCTGCGACCTCTCGCCACA
GCGGACATGTACTTCCAAAGTGGCGGCGGTAGAGACGGAACCGCCGGCTGTGCGGCCGCCTGTGTAG-------------
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>chr6B_1_TraesCS6B01G123500
ATTGAAAGGATCGAAAATGAGTTGCAATTTAATTGCGTCAACCGGATCTTGAACTCAAAACCTCTTGGTTCTGATACCAT
GTAGAAGCGCGTGCTCTAGCCAATGCATTCAAAATATCGATCTGATGAAAAAGACTAGACAATACATTTATACATCAACA
ATGGTCATAGGAAGCGGATGCGGTGACTGCAAGAGCGGTTGACCAGGTTGACTACGGCCTACTGTTGACCACTCTCCTTC
TCAAATCTTTATTGCATTTAAAAAATCATTATTGTTTCTAAGAAAAGTTATTGCGCAGCTGCGTGTAGCTTGTCAGAGCA
TCTCCAATAGCATGTGTATATTTGGATGTCTATATATTCATATAGACAATGCTCTAAAAAGATTCCCTCATATACACATC
CAATTTTGTATCAGAACGTCTATATACAGGGATCATGACAGGTGGGCCGTTGCTGGAGAAAAGAAAAAATCATAACTACA
ACTGAGTTTAGACAACGCCTTCACATTGTCCAGGCGTGGACATTGTCGAGATCGATTTAGAGGATGTGTATATTTAGACG
ACCATATAGACAAGCTGTTGGACGCCTATTTTAGGCTCACGTCGTGGAAAATAAGTATAGATATCCATACAGACAAAGCT
ATCGGAGATGCTCTCACACAGTCGTACGACATGCATTGCATGTGTGCTCGCATGGTCGCTTTCCACCGTGCCGTATCGCT
TAACAATTGCTAATGTATGGCCGGCGCATGAAACCTGACCAGAATCAGGAGGTCAAAGAAAAACCAAGTTTATATTTCGC
GCGCCGCGCGCCACCCAGACCCAGCCGCAGCTACAGGCGGCCGCCGCCGATG--------GCCGGAGCCCCACGCTCTAG
TTCTCTAGCTCAGATGCAGATCGACTATATATTTCTTGCCGCCCGGCTGGAACACCTGCATCGCCACAACCCACAACCCT
GCCTGTGAAGCAGCTACCTCGCCTCGAATTAAACGTTCGCGAGTGATCATGCCTAATCTGCTTGCAAGGCTCGGGAACGG
CGGGCGTGGAGCTTGCTACGGCGTCGTGGCGTCCTTGGCATTGGCGCTCGTGTTCTGCGTGCTCGTCGCCACCGTCAGCG
TCTGGAAGGCCTTCTTGTTCGCCGGCATGGCGTTGACCGCCTTCGGCATCGGTGAGTGCCTCGCGCCCAATAGCTGGCGC
GTCGGCGCCGCCGCCGAGCGTGAGATTACAGCAGGCGTGCCTT---TGGCAGCATGCCGGTTCGGGCTCGGGAAGGCCAC
GATCGACTCGTTGCCCACGTTCGCGTACGCATCCTGTGGCGCCGAT---GCCGATGCCGACCTCGAAT---------GCG
GTAGCGCCCAGCTGTGCTCTGTGTGCTTGGAAGACCTTGAGGACGGCGAGATGGTGCGGGAACTGCCGTCGTGCAAGCAC
ATCTTCCATGTCGAGTGCATTGACATGTGGCTGCACTCACACACCACTTGTCCTATCTGCCGCTGCGACCTCTCGCCACA
GCGGACATGTACTTCCAAAGTGGCGGCGGTAGAGACGGAACCGCCGGCTGTGCGGCCGCCTGTGTAGTGTGTAGACAGGC
ACATGTCCAGGGTGGCATTTCTTCACGTCATAATTTTTGTACATTTCTTTTGTCTATTATTTTTAAATGAACGCTCATAA
GTTAC-AGTTTCCACATGTCAACCTTGGTAAATACTCCCTCCGTAGTGATCTAAACGCTTTT------TTTTACAGAGAG
AGTAAAATTATGGCAAAATTCTAACAGTAGCGAGCGGTAAATGCCTAGCTGTAGCGCG------------------GCGC
GTTGCAGCTAACTTTTAGTAGTAGCCAGTGGCAGAGCTTGTCCCAAATAATTGGGCGGGCCGGCTTATAGAAACATCTAT
TGGGCTTGTGTTTTGTGGCCCAAAAATAGATATACCTTCATGAAAATCACATAAGTTGGGCGGGCCAGGGCCCTTTGGGC
CTTGCTGTAGCTGTAGCTCCGCCACTGGTAGTAGCGTCAAGTGCAGCCCCGCGCTACTGCTACACAGACTTAGCAATAGA
GTGGGTCCATCTAGTGCTACTGCTAACTAGTTGCAGAGCGCCAGTATGAACCTCACGCTACTTTTAAGTATGTGAATCAG
TAGCGCTGCTGCTACTCTCTTACCCCGCGCCACTGCTAATATTTTCTGTATTTTTTCTTCTACTTATTAATGCATTATTT
ATACAGGTTTTATACAATAGCAACATACACATTCATTGAAACTATATGAGACAAGAATGTCTCATTGTCATCATCATCAT
CGAAGTGCTACAACATTGTCTCATCATAGTGATCCAACACAAATGTCTCATCATCATCTCGAAATAGCTATACAATTTAG
GCTACCCGTAATGGTAGTATCATAGGTAGTATCATGCATGCCAACTAAGCAATTTCAATGAGATGACATAGAATTAAATG
AAGAAAGAGATGCTTGAGTATCATATCATGATACCGTATCATATTAAATGATGTGCTACTTTGTGTCATGCATGACAATA
AATATAATACTTTATGATACCAACATATGATACTTTGCATTACGGGTGTAGT
>chr6D_721
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TAACAATTGCTAATGTATGGCCGGCGCGTGAAACCTGACCAGAATCGGGAGGTCAAAGAAACACCGAGTTTATCTTTCGC
GCGCCGCGCGCCACCCAGACCCGGGCGCAGCTACGGGCGGCGCCCGCCGATCTCCAGTCAGCCAGGGCCCCAGACTCTAG
TTCTCAAGCTGAGATGCAGATCGACTATATATTTCTTGCCGCCCGGTTAGAACACCTGCACCGCCACAACCCACAACCCT
GCCCGTGAAGCAGCTACCTCG-----AATTAAACGTTCAGGAGTGATCATGCCTGATCTGCCTGCAAGGCTCAGGAACGG
CGGGCGTGGAGCCTGCTACGGCGTCGTGGCGTCATTGGCATTGGCGCTCGTGTTCTGCGTGCTCGTCGCCACCGTGAGCG
TCTGGAAGGCCTTTTTGTTCGCCGGCATGGCGTTGACCGCCTTCGGCATCGGTGAGTGCCT---GCCCAATAGCTGGCGC
GTCGGCGCCGCCGCCGAGCGTGAGATCACAGTGGGCGTGCCTT---TGGCAGCATGCCGGTTCGGGCTCGGGAAGGCCAC
GATCGACTCGTTGCCCACGTTCGCGTACGCATCCCGTGGCGCCGAT---GCCGATGGCGACCTCGAAT---------GTG
GGAGCGCCCAGCTGTGCTCTGTGTGCTGGGAAGACCTTGAGGAAGGCGAGATGGTGCGGCAGCTGCCGTCGTGCAAGCAC
ATCTTCCATGTCGAGTGCATTGACATGTGGCTGCACTCGCACACCACTTGTCCTATCTGCCGCTGCGACCTCTCGCCACA
GCGGACATGCTGTGTCAAAGTGGCGGCGGTAGAGACGGAAACGCCGGCTGGGCTGCAGCCTGTGTAGTATGTAGGCAGGC
ACATGTCTAGGGTGGCATTTCTTCGGGTCATAATTTTTGTACATTCCTTGTGTCCATTTATTTTAAATGAACACTCATAA
GTTACAAGTTTCCACATGTCAACCTTGGTAAATACTCCCTCGATAGTGATCTAAACGCCTTTATATTCTTTTACAGAAGG
AGTAAAATTATGGCAAAAC-CTAATAGTAGCGAGCAGTAAATGTCTAGCAGTAGCGTGGTGCCCTCGCTACAGCTAGCGC
GTTGCACCTAACTCTTAGTAGTAGCCAGTGGGGAGCTTGTT-CCAAATAATTGGGCGGGCCGGCTTATAGAAACATCTAC
TGGGCTTGTGTTTTGTGACCAAAAAATAAATATACCTTGAAGAGAATCACATAAGTTGGGTGGGCCAGGGCCCTTTGGGC
CTTG------CTATAACTTCGCCACTGGTAGTAG----------------------CTGCTACACAGACTTAGCAGTAGC
GTGGGTCCATCCAGTGCTACTGCTAACTAGTTGCAGAGCGATAGTATGAACCTCGCGCTACTTTTAAGTCTGTGAATCAG
TAGCGCTGCTGCTACTCTCTTACCCTGCGCCACTGCTAATATTTTCTGTATTTTTTCTTCTACTTATTTATGTAGTATTT
ATACAGATTTTATACAATAAAAACATACACATACATTGGAACTATATCAGACAAGAATGTCTCATCTTTCATCATC----
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>chr6A_722
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-AACAATTGCTAATGTATGGCCGGCGCATGAAACCTGACCAGAATCGGGAGGTCAAAGAAACACCGAGTTTATCTTTCGC
GCGCCGCGCGCCACCCAGACCCGGGCACAGCTACGGGCGGC------------------------GGCCCCACGCTCTAG
TTCTCAAGCTCTGATGCAGATCGACTATATATTTCATGCCGCCCGGCTGGAACACCTGCACCGCTACAACCCACAACCCT
GCCTGTGAAGCAGCTAC-TCG-----AATTAAACGTTCACGAGTGATCATGCCTAATCTGCTTGCAAGGCTCGGCAACGG
CGGGCGTGGAGCCTGCTACGGCGTCGTGGCGTCCTTGGCATTGGCGCTCGTGTTCTGCGTGCTCGTCGCCACCGTCTGCG
TCTGGAAGGCCTTCCTGTTCGCCGGCATGGCGCTGACCGCCTTCGGCATCGGTGAGTGCCTCGCGCCCAATAGCTGGCGC
GTCGGCGCCGCCGCCGAGCGTGATATCACAGTGGGCGTGCCTT---TGTCAGCATGCCGGTTCGGGCTCGGCAAGGCCAC
GATCGACTCGTTGCCCACGTTCGCGTACGCATCCCGTGACGCCGAT---GGCTATGCCGACCTCGAAT---------GCG
GGAGCGCCCAGCTGTGCTCTGTGTGCTTGGAAGACCTTGAGGACGGCGAGATGGTGCGGCAGCTGCCGTCGTGCAAGCAC
ATCTTCCATGTCGAGTGTGTCGACATGTGGTTGCACTCGCACACCACTTGTCCTATCTGCCGCTGCGACCTCTCGCCACA
GCGGCCATGCTCTGCCAAAGTGGCAGCGGTAGAGACCGAACCGCCGGCTGTGCTGCCGCCTGTGTAGTGTGTAGGCAGGC
ACATGT--------------------------------------------------------------------------
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>chr6A_722
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-AACAATTGCTAATGTATGGCCGGCGCATGAAACCTGACCAAAATCGGGAGGTCAAATAAACACCGAGTTTATCTTTCGC
GCGCCGCGCGCCACCCAGACCCGGGCACAGCTACGGGCGGC------------------------GGCCCCACGCTCTAG
TTCTCAAGCTCAGATGCAGATCGACTATATATTTCATGCCGCCCGGCTGGAACACCTGCACCGCCACAACCCACAACCCT
GCCTGTGAAGCAGCTACCTCG-----AATTAAATGTTCACGAGTGATCATGCCTAATCTGCTTGCGAGGCTCGGCAACGG
CGGGCGTGGAGCCTGCTACGGCGTCGTGGCGTCCTTGGCATTGGCGCTCGTGTTCTGCGTGCTCGTCGCCACCGTCAGCG
TCTGGAAGGCCTTCCTGTTCGCCGGCATGGCGCTGACCGCCTTGGGCATCGGTGAGTGCCTCGCGCCCAATAGCTGGCGC
GTCGGCGCCGCCGCCGAGCGTGATATCACAGTGGGCGTGCCTT---TGGCAGCATGCCGGTTCGGGCTCGGCAAGGCCAT
GATCGACTCGTTGCCCACGTTCGCGTACGCATCCCGTGGCGCCGAT---GGCGATGCCGACCTCGAAT---------GCG
GGAGCGCCCAGCTGTGCTCTGTGTGCTTGGAAGACCTTGAGGACCGCGAGATGGTGCGGCAGCTGCCGTCGTGCAAGCAC
ATCTTCCATGTCGAGTGTGTCGACATGTGGTTGCACTCGCACACCACTTGTCCTATCTGCCGCTGCGACCTCTCGCCACA
GCGGCCATGCTCTGCCAAAGTGGCAGCGGTCGAGACGGAACTGCCGGCTGTGCTGCCGCCTGTGTAGTGTGTAGGCAGGC
ACATGT--------------------------------------------------------------------------
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>chr6A_900
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---------------------------TATATTTCTTGCCGCCCCGCTGGAACACCTGCACCGCCACAACCCACGACCCT
GCCTGTGAAACAGCTACCACG-----AATTAAACGTTCACGAGTGATCATGCCTAATCTGCTTGCAAGGCTCAGGAACGG
CGAGCGTGGAGCCTGCTACGGCCTCGTGGCGTCCTTGGCATTGGTGCTCGTGTTCTGCGTGCTCATCGCCACCGTCAGCC
TCGGGAAGGCCTTCTTGTTCGCCGGCATGGCGTTGACCGCCTTCGGCATCGGTGAGTGCCTCGCGCCCAATAGCTGGCGC
GTCGGCGCGGCCGCCGAACGTGAGATCACAGTGGGCGTGCCTT---TGGCAGCATGCCGGTTCGGGCTCTGGAAGACCAC
GATCGACTCGTTGCCCAGGTTCGCGTACGCATCCCGTGGCGCCGAT---GCCGATGGCGACCTCGAAT---------GCG
GGAGCGCTCAGCTGTGCTCTTTGTGCTTGGAAGACCTTGAGGACGGCGAGATGGTGCGGCAGCTGCCGTCGTGCAAGCAC
ATCTTCCATGTCGACTGCATTGACATGTGGCTGCACTCACACACCACTTGTATTATCTGCCGCTGCGACCTCTCGCCACA
GCGGACATGCACTGTCAAAGTGGCAGCGCTAGAGATGGAACCGCCGGCTGTGCTGCCGCCTGTGTAGTGTGTAGGCAGGT
ACATGT--------------------------------------------------------------------------
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>chr6B_1024
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-----------------------------------------------------------------------CGGGAACGG
CGGGTGCGGCGCCTGCTACGGCGTCACGGCGTCCTTCGTGTCCGTGCTCGTGTTCTGCGTGCTCGTCGCCACCGCCAGCG
TCTGGAAGGCGTTCCTGTTCGCCGGCCTGGCGCTGGCTGCCTTCGGGCTCGTGGCGTGCCTCGCGCCCGAGAGTGGGCGG
AGAGG------CGCCGAGCGTGAGGTCACGGCGGGCGTGCCTTGGGTGGCAGCATGCCGAACTGGGCTCGGTAAGGCCGC
CACGGAGTCGTTGCCCACGTCCGCGTACACGTCCCGTGGCGCCGAGGCCGGCGGTGCGGACCTTGACCTGGAGTGCGGCG
GGAGCGGCCAGCCGTGCTCCGTGTGCTTGGAAGACCTTGAGGACGGCGAGATGGTGCGGCAGCTGCCGGCGTGCAAGCAC
CTCTTCCATGTCGAGTGCATAGACATGTGGCTGCACTCGCACGCGACTTGCCCTGTTTGCCGGTGCGACCTCTCGCCACC
ACGGACGGTTACTGCCAAAGTGGCGGCTGTAGAGATGGAACCGCCGGC--------------------------------
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>chr6D_1024
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-----------------------------------------------------------------------CGGCAACGG
CGGGCGCGGCGCCTGCTATGGCGTCACGGCGTCCTTCGTGTCCGTGCTCGTGTTCTGCGTGCTCGTCGCCACCGCCAGCG
TCTGGAAGGCGTTCCTGTTCGCCGGCCTGGCGCTGGCTGCCTTCGGGCTCGTGGCGTGCCTCGCGCCCGAGAGTGGGCGG
AGAGG------CGCCGAGCGTGAGGTCGCGGCGGGCGTGCCCTGGGTGGCAGCATGCCGAACTGGGCTCGGAAAGGCCGC
CACCGAGTCGTTGCCCACGTTCGCGTACACGTCCCGTGGCGCCGAGGCCGGCGGTGCGGGCCTCGACCTGGAGTGCGGCG
GGAGCGGCCAGCCGTGCTCCGTGTGCTTGGAAGACCTTGAGGACGGCGAGATGGTGCGGCAGCTGCCGGCGTGCAAGCAC
CTCTTCCATGTCGAGTGCATAGACAAGTGGCTGCACTCGCACACGACTTGCCCTGTTTGCAGGTGCGACCTCTCGCCACC
GCGGACGGTTACTGCCAAAGTGGCGGCTGTAGAGATGGAACCGCCGGC--------------------------------
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>chr6A_1024
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-----------------------------------------------------------------------CGGGAGCGC
CGGGTGCGGCGCCTGCTACGGCGTCACGGCGTCCTTCGTGTCCGTGCTCGTGTTCTGCGTGCTCGTCGCCACCGCCAGCG
TCTGGAAGGCGTTCCTGTTCGCCGGCCTGGCGCTGGCTGCCTTCGGGCTCGTGGCATGCCTCGCGCCGGAGAGCGGGCGG
AGAGG------CGCCGAGCGTGAGGTCGCGGCGGGCGTGCCCTGGGTGGCAGCATGCCGAACTGGGCTCGGTAAGGCTGC
CACCGAGTCGTTGCCCACGTTCGCGTACACGTCCCGTGGCGCCGAGGCCGGCGGTGCGGACCTGGACCTGGAGTGCGGCG
GGAGCGGCCAGCCGTGCTCCGTGTGCTTGGAAGACCTTGAGGACGGCGAGATGGTGCGGCAGCTGCCGGCGTGCAAGCAC
CTCTTCCATGTCGAGTGCATAGACATGTGGCTGCACTCGCACACGACTTGCCCTGTTTGCCGGTGCGACCTCTCGCCACC
GCGGACGGTTACCGCCAAAGTGGCGGCTGTAGAGATGGAACCGCCGGC--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
----------------------------------------------S--------------S---S-------S------
----------------------S-S---------S------SS--------S-----------S-S--------------
-----S------------------------------------------------------S-------------------
---------------------SSSSS------------S-----------------------------------------
------------S-------------------------------------------------------------------
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--------------------------S-----S-----------------------------------------------
----------------------------------S---------------------------------------------
-S---------------------------------------------------------S-S------------------
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-------------S---------------------------------------S--------------------S-----
-------S----------------SS-------------------S---S----S---SS------------S-------
-----------------------------------------SS---------------S------------------SS-
------------------SS----S----------S-------S-----S------S-----------------------
------S------S-----------------SSSSSS-SS-S-------------------------------------S
-----------------S--S-------S---------S-S--S----------------S-------------------
----SSSSSS--S--S--S---------------SSSSSSSSSSSSSSSSSSSSSS-------------------S---S
-----------S----------------------------SS------------S--------------S----------
-------------------------S------------------------------------------S---S-S-----
------S------------SS-----------S-----S--------S-----------------SS-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_52
--------------------------------TTGCGTCAACCGGATCTTGA----------------------------
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>reverse_1920
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-------------------------------------------------------------------------------T
TGGGCTTGTGTTTTGTGGC-------------------------------------------------------------
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