>input_sequence_75817
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---------------------------------------------------------------ATGACCCCGAAGCTTGA
GGCCATACCAATGATCCTAGACTTTACGAAGTACTTCCTGGCTGTGCCGACGGAGTTCAAGGTCAAGACAAACACCGGTT
GCTCATGGAGGGTCACTATCCGGCTGATTAACGGCAGGGTCACCCTCGATCAGGGTTGGGCCACCTTCATCGTCGTCCAC
CAGATCAAGATCAGGTACATAGTGACCTTCAACTTGCCGACTCCCAACACGTTCAAGGTCATGTCTTCAATGACGACGGC
CGCCGCGCTCACCCAGGATCCGCGCAATAGAAGGCTGTCGCGCTCACCCCGGCCATATCCATGCCTACACGCACCAGCGC
GCCCAGCCACCCCTCGTCGCCACAGCCATGCGGCCCTCTGCACCTCCATGAGCCACGGCCGCCACCCCACTGCTCCGCTG
ACCCCGCCGCCGCACACACAGCCGGGACCTCGAGATCCGCTCGAACCTCGTCGCCAAACGGCCCCACCGTCGCCGACGCT
GCCCGGGCTTTGCCCGACGACGCCCTTTGGCGGCGGTGAGGGGAGAGAGGGAGAAGGAGGGCCCTAG-------------
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>chr4A_1_TraesCS4A01G340200
TTCCCCCTCAGTCATAGTGGGAGTGAAGCGGATGATGACGACTGAATTTGAAGTCTTGCACTTCTGTCTTTTTCTCCGCT
ACATCATCATCAACTGCGTCTCTGATGTGTCGACACCTAGTGAGGTGACTGCATCACTCTGCCGGGGATGTAATAGTAAA
GCGCGGCGGGAGATGGGGGTGAGATCGGTGGGCGAGGGCTCGTGGTATTTGGTGGAAACGGGGGGTGCGGACCCGGCCCG
ACCCGACTCGGGACTGAGTATATAGCACACGGT------TTGGTTGGTGCCGACGACCGCGCCGCGCGCCTGATATTTTG
GTTTTGTCCTCTTGCTCCGGGCTGGGAAATCGGGGTGGGTAGGGTTTGGCCTCGAGTGAGCACACGGTTTGGGTTCGGGT
TTGGATG--GGCATGGCATACGTGCCACCATATGGACGGCCGTGGAACCAAGTACGTCGCGACGAGGGGAGCCTTTGCTC
TGGTTGCTTGGCAGCTGGAAAAGTTGAATAGTTGATGGGGGCATCAGTCCAGTCATTACGTCGCCAGAGTAGAGTAGAGT
AGA----GTCTGGTTTGCTGACGAAACTGCTCCTTTGCTCCGTGAGCTC--------ATTTCAGTTTGGGATGAACAGTA
CAAGCCAGG-AAAAAAATCTCGAACAAATGGATCATCGACGATTGTTTGGGAATTTTCATAATGAAACAACATACGCAGA
AGTGGTGGC-AAAAAAATATCAGCATCGACTTAA-AAAAACATGGATCACCGATCTTTTTCATGATTTTGTGCTTTTCAT
AATGCGGATCGACATGGAAAACAAGAGCAAGGAGGTGGTGCCGCCAATGGAGCATGACAAGGGCAAGTATGTGGTGCCAC
CCTTGGAGGTGGTGCCGCAGACGCCCGTCCAGGTGCCGCCCACAGACGGCGACATGTTGCCGGAGGAGCCCCCCAGCGGC
AAGTGTCGGAACAATGGCCACTACCATGAGAAGGGTGGCCCAACCCACTAATGCAATGTGATTATGACCCCGAAGCTTGA
GGCCATACCAATGATCCTAGACTTTACGAAGTACTTCCTGGCTGTGCCGACGGAGTTCAAGGTCAAGACAAACACCGGTT
GCTCATGGAGGGTCACTATCCGGCTGATTAACGGCAGGGTCACCCTCGATCAGGGTTGGGCCACCTTCATCGTCGTCCAC
CAGATCAAGATCAGGTACATAGTGACCTTCAACTTGCCGACTCCCAACACGTTCAAGGTCATGTCTTCAATGACGACGGC
CGCCGCGCTCACCCAGGATCCGCGCAATAGAAGGCTGTCGCGCTCACCCCGGCCATATCCATGCCTACACGCACCAGCGC
GCCCAGCCACCCCTCGTCGCCACAGCCATGCGGCCCTCTGCACCTCCATGAGCCACGGCCGCCACCCCACTGCTCCGCTG
ACCCCGCCGCCGCACACACAGCCGGGACCTCGAGATCCGCTCGAACCTCGTCGCCAAACGGCCCCACCGTCGCCGACGCT
GCCCGGGCTTTGCCCGACGACGCCCTTTGGCGGCGGTGAGGGGAGAGAGGGAGAAGGAGGGCCCTAGGCGGCCGGAGTTT
GGGCACCCCCGTGCGGCCCGTGGAGCCGCACGGGAGCGAGAGGTGACAGTACCACTCAATATCTATAGATCCGTCCGCCT
TTGATATTTTCGTTTGGCCTGGAGTGAGCACATGGTTTGGGTGACGATGGCATGCGTGCCACCTGCGGACGCCCGTGGAA
CCACCTATATGTAGCGACGAAGGGAGCCTCTGCTTGCGAGGCTTGCCTCGCAGCTGGCAAAGTTGATGAGGGCATCAGTC
CAATCATTACGTCACCAGAAAGTGCTCCTCTGCTCCCCGAGCTCATTTCAATTTGGGATGAACAGTACAAGCCAAACATC
CAACAAATGTTTTGAGTGTTTGCGAATTTTCATCATGAAACAACATGCGTACAAGTGGTGGCAAAAAAAAAATCAACATC
AA--TTTTTTTGACAAACATGTAGCATCGATTTTTTCATGATTTTCACA---------AATATCATTTCGTGATAAATTT
TTGCAAGCACACAAACCAGTTGTGAAAGTTTGCCACATTTTTTCTATTTTTATTTGTTTTACTATTTTTC-------TTG
ATTTCACTGTTCATCCAAAAGCATTTGAGCTTTGGACCGGATGGTCTACATCCGGTGCTTGAAGGCATCTCTTTCCCTCT
CTCGAGGTCACTGATGGGTGATCGAACCACGGACCGATAAGCATTTTCCTCGTGAAGAAAATTCACCATC-ATTTCTCAC
TTGACTTGCTCCACTCCACCCCCTCGCTGTACATGTGCCCGTGTAGCTAACCCCCAGAGTTTTCACAACGATTCTGATAT
GTGAAACCCTAGTTGACCGATTACATCAATTAAAAAAACTAGTTTGAATGTATGGTAACCAAATTCAACAAAAAACAAAT
CTAATGTGACAAATACTGAGTTAGTGCAGCTAGTTTAGGTTCAACAATGACATACTGAGCTGTATAGTAAACCTATTGGA
CCTCTTTCCTCTCCCACAAAAAAGATAACAGGCTTTCCTCCTTCGC
>chr5D_142
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-------------------------------------------------------------CCGGGGATGTAATAGTAAA
GCGCGGCGGGAGATGGGGGTGAGATCGGTGGTTTCGGGCTCGTGGTTTTTGGTGGAAACGGGGGGCGCGGACACGACCCG
ACACGACTCGGGACTGAGCG--TAGCACACGGTTTGGCTTTGGTTGGTGCCGACGACCGCGCCGCGCGCCTGATATTTTC
GGTTTGTCCTCTTGCTCCGTGCTGGGAAATTGGGGTGGC-----TTTGGCGTGGAGTGAGCACGCGGTTCGGGTTTGGGT
GGCCATGGCGGCATGGCATGCGTGCCACCTGCGG----------------------------------------------
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---------------------CGAAACTGCTCCTCTGCTCCCAAAGCTCATTTCAGTATTTCAGTTTGTGATGAACAGTA
CAAGCCAGG-AAAAAATA--------------------------------------------------------------
---------------------------------------------------GATCTTTTTTCACA---------------
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--------------------------------------------------------------------------AACTTC
GAACAAATGTTTTAAGTGTTTGGGAATATTCATCATGAAACAACACTCGTAGAAGTGGCGGCAAGAAAAAAACCAGCATC
AATTTTTTTTTGACAAACATGGGGCATCTATTTTTT--------TCACG---------AATCTCATTTCCTGATAAATTT
TTGCAAGTACACCAACCATTTTTCAAAGTTTGCCACAATTTTTTCATTTTTTAA------ACTATTTTTC-------TTG
GTTTTAATGTTCATCCAAGAGCATTTGAGCTTGGGAGCAGATAGTCCACATCCGGTTTTTGAAGTCATCTCTTTCCCTCT
TTCGAGGGCACTGATGGGTGATCGGAGCATGAACCGATAAGCATTTTCCTCGTGA-GAAAATTTGCCATTGGTTTCTCAC
TTGACTTGCTCCACTCCACCCCATGGACGTACGTGTGGCCGTCTAGGCAATCCCTAGAGTTCTCATGGCGATTCTTATAT
GTGGAATCCCGGTTGACCG-------------------------------------------------------------
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>chr5D_487
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--------------CTGGCAAAGTTGAATAGTTGATGGGGGCATCAGTCCAGTAATTACGTCATTAGAGTAGAGTAGAGT
AGAGTAGGTCTGGTTTGCTGACGAAACTGCTCCTCTGCTTCGCGAGCTC--------ATTTCAGCTTAGGATGAACAGTA
CAAGCTAGGAAAAAAAATCTCGAACAAATGGATCATCGATGATTGTTTGGGAATTTTCATAATGAAACAACATACGCAGA
AGTGGTGGGAAAAAAAATATCAGCATTGATTTTTTAAAAACATGGATCATCGATCTTTTTCATGATTTTGTGCTTTTCAT
AATGCAGATCGACACGTAAAACAAGGGCAAGGAGGTGGTGCCGTCAATGGAGCATGACAAGGGCATGGATGTGGTGCAAC
CCTTGGAGGTGGTGCCGCAGACGCCCGTCCAGGTGCCGCTCACAGACGGCGACGTGATGCCGGAGGAGCCCCCCAGCAGC
AAGCGTCGGAACTACGGCCACTATCATGAAGAGGGTGGGCCAACTCACTGATGCAAAGTGATTATGACCCCGAAGCTTGA
GGCCATACCAATGCCCCTAGACTTTACGAAGCACTTCCCGGCCGTGACGACGGAGTTCAAGATCAAGACAAACACCGGTT
GCTCATGGAGGGTCACTATCCAGCTGATTAGCGGCAGGGTCACCCTTGATCAGGGTTGGGCCACCTTCGCCGTCGTCCGT
CAGATCAAGATCGGGTATATGGTGACCTTCAAGTTGCTGACTCCCAACACGCTCAAGGTCATGTCTTCAATGACGACGGC
CGCCGCGCTCACCCCGGATCCGCGCAGTAGAAGGCCGCCGCGCTCACCCCGGCCATATCCACGCCTGCACGCACCAACGC
GCCTAGCCACCCTTCGTTGCCGCGGCCACGCGGCCCTCTGCACCTCCAAGGGCCACAGCCGCCACCCCACTTCTCCGCTG
ACCCCGCCGCCGCAAGCACGGCCGGGACCTCGAGATCCGCTCGAACCTCGTCGCGAAACGGCCCCACCGCCGCCGACGCC
GCCCGGG----------CGACGCCCTTTGGCGGTGGTGAGGGGAGAGGGGGAGAAGGAGGGCCCTAGGCGGCCGGAGTTT
GGGCACCCCCGT-CGGCCCGTGGAGCCGCACGGGAGCGAGAGGTGACAGTACCACCCAATATCTACAGATCCGTCCACGT
CTGATATTTTCGTTTGGCCTGGAGTGAGCACATGGTTTGGGTGGCGATGGCATGCGTGCCACCTGCGGACGGCCGTGGAA
CCACCTATACATCGCAACAAAGGGAGCCTCTGCTTG--AGGCTTGCCCCC------------------------------
--ATCATTACGTCACCAGAAAGTGTTCCTCTGCTCCCCGAGCTCATTTCAGTTTGGGATGAACAGTACAAGCCAAACTTC
GAACAAATGTTTTGAATGTTTGGGAATTTTCATCATGAAACAACATACGTACAAGTGGTGGCAGAAAAAAATCAACATC-
-ATTTTTTTTTGACAAACATGTAGCATCGATTTTTT--------TCACGATTTCCACGAATATCATTTCGTGATAAATTT
TTGCAAGCACACAAACCAGTTGTGAAAGTTTGCCACATTTTTTTCTACTTTTTA------TTTGTTTTACTATTTGTTTG
ATTTTACTGTTCATCCGAGAGCATTTGAGCTTGCGACCGGATGGTCTACATCCGGTTCTTGAAGGCATCTCTTTCCCTCT
CTCGAGGTCACTCATGGGTGATCGAACCATGGACCGATAAACATTTTCCTCGTGAAGAAAATTTGCCATC-GTTTCTCGC
TTGACTTGCTCCACTCCACCCCCTGGCCGTACGTGTCGCCGTGTAGCTAATCCCGAGAGTTTTCACGACGATTCTGATAT
GTGAAACCCTAGTTGACCGATTACATCAATTAAAAAAACTAGTTTGAATGTATGGTAACCAAATTCAACAAAAAACAAAT
GTAATGTGACAGATACTGAGTTAGTGCAGCTAGTTTAGGTTCAACAATTACATACTGAGCTGTATAGTAAACCTATTGGA
CCTCTTTCCTCTCCCACAAAAAAGATAACATGATTTCCTCCTCCGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-------------------------------SSSS-----------S------------------S------S--S----
--S---------------SSSS---------------------------------------------------------S
-S-----------------S----------S-------SSSSSS------S-S----------S-----S-----S----
SSSS---------------S---------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----S----------------------------------S--------SSS---------------
----------------------------------S-------S-------------------------------------
---------------------------------------S----------------------------------------
--------S-----------------S--S--SS---------------S------------------------------
-----S--------S-S--------S-----------------S---------------------S-S---------S--
---------------------------------------S-------------S--S--------------------S--
---S--------S-S--------S-----SS-------S-----S----S------S-----------------------
-------------SS----------------S------S---S---S--------------S------------------
---------------------S--------S---------------S---------------------SS--------SS
------------S----S--S-----------S----S-------------S----------------------------
--------------S-----------S--------S-S-----------------------S----S---------S---
---S--------S----S---S-S----S-------------------S-S-----S--------------S--------
--------------SS---S----------------------------------S--------------S---------S
-------SSSSSSSSSS----------------S-------------S--------------------------------
------------S------------------------------------------S---------S----------S-S-
S------------------------------------------S---------------------------S--------
---------SS-S--S--S-----------------SS---------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------------------S-------------------------S--------------------------S--
S---------------------S-----------------------S-------------------------S--S----
------------------------------------SSSSSSSS----S-------------------------------
-------------------------------------------SS------S-SSSSSSS--------------------
----S-------------S-------------S-----------------------S-----------------------
-----------------------------S---------------------------------SS------S--------
------------------------S--S----S----S------------S---S-----------S-------------
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S----------S------------------------------------S-------------------------------
------------------------------S-S---------S---
>forward_21
-TCCCCCTCAGTCATAGTGGG-----------------------------------------------------------
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>reverse_1087
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----------------------------------------------CCGACGGAGTTCAAGGTCAA--------------
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>forward_22
--CCCCCTCAGTCATAGTGGGA----------------------------------------------------------
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>reverse_1295
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--------------AGGATCCGCGCAATAGAAGG----------------------------------------------
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>forward_866
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----------------------------------------------ATGGAGCATGACAAGGGCAA--------------
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>reverse_2353
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--------------------------------ATGTGCCCGTGTAGCTAACC----------------------------
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