>input_sequence_75811
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-----------ATGGCCCGCCTCGCCACCCTCGCCCTGCTCCTCCTCTCCCTCGTGTCCGTCGCAAGCTGCCGCGACCTT
GAGGCCATCTCCGACGACCAGGGCCCGCCCGTCCCCGTCCTCCTCACTCGAGATGATCAGGCGGATGCTGCTGCTGAGGT
GACGACCCTTCCGAGCTTCCCGGGCCCGGCCGTCGCATGGGACGAGGACGAGCTCCCCTCCCACCGCGGTCACCTCTGGT
TGGCGCGCCG------TCACGGCTTCTTCCACCGCCCCGGCGCGTTCACCGGCCTGGGCGAGGCCCGCGTCCAACCTGCG
GTCTTCTTCCCCACCGAGCTTGATCGCGGCGAAGAGCAAGCACCCTGGAAGGCGGTGCTGGAGGCGGTTGCGGAGCCTTA
CCACGACTCACGCGCAGCCACCGACGGCGAGCAAAAGCCGTTTCATGCCAAGGAGGAGGGACAGGAGAACGAGGCAGTGA
AG------------------ATGGCGAGGAGGTTCGGTCACTGCGTCGGCCTCCCCCACCGCCACCACCACGACCAGGAA
GAGAAGGACAAACGA---CAACCACGGGCAGGACAAGGATGA--------------------------------------
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>chr3B_1_TraesCS3B01G498700
TTTTATTGCCTCCGTTGTTTCTACAAGTTCTCATCGTTGTTTTCTTCTCCGGGGCGGCGATTTCCTTCGCCAGTCGCAGT
CGCGGACGTCTCCTGGTTGGAATATCGGCACCTTCATAGCTGTTGCTTCTACAAGCTCCTGGGTTTAAAAACGGTTGCTC
CGCCGAGCCAGACGCCTAGAGGTGGCATCGAACTATGCTCATGGCGCGCCGCCGGTGGATGCAGGAGGAAGAAGACTTTG
GCACCCCCAAGAGATATGAATGTAATTTTACGTTTCTATATGGTTGTGTTTCTAAGGACATGTGATGCTGGATATATATA
TGGGTCTTGGGCCCTTTAACACACTCAAAAAAAAGAACACAACACATGCCTTCCAAAGGCTATTAACCAAAATCTAATTC
TAGAAAGAATGGCAAAGTAAGGGATTTCAGTCTGCTGAGAGACTGAATATCTCTCCCACGTCTGATCTTCCTATCATGCA
TATTGTTATTTGAAACCGTGACACAGTTGACATCATCGCGTACGCAATTGGACCACGTCGAGCATCGACACATACTAGTT
CGCCTCTCGACGGTA-------GACTCGTCGAATGCAAGGGTGCAATCATGCAGTACACCAGAAAATTTCAGTTTAATTT
GCTAC-AGATATCTCTTTATATATATGCAGTGCAACTCAGAAAAAGATAGCTTGCAGTTCCACCGTTTCGAACGAATAAA
TGTTAATGTGGTCTAGTCAGTCATGTGCATGTA-----------GCGTCACCGATGTGATGGAACAGGTAAGTTAATTAA
CGCGTCTCCTGCGCC---------------------------------------------------AAGAGGATGCATAT
ATATCGAAGCTGAAATTTTAATTTCAAGCCAACGAACCATTTGACCAAATACTTAAGGGCGATCCACCTCCATC------
--------------------------------------------------AGAATCCATTCATTTCCAGAAAATAAAAAC
ACCGATTCCTTTCTCCACTACAAATACCCCGTCCAGCCGCTCCCGTCTC-----CTCAGTCCACAGAAGACGTCTTCCAG
GTCCAGCCACCATGGCCCGCCTCGCCACCCTCGCCCTGCTCCTCCTCTCCCTCGTGTCCGTCGCAAGCTGCCGCGACCTT
GAGGCCATCTCCGACGACCAGGGCCCGCCCGTCCCCGTCCTCCTCACTCGAGATGATCAGGCGGATGCTGCTGCTGAGGT
GACGACCCTTCCGAGCTTCCCGGGCCCGGCCGTCGCATGGGACGAGGACGAGCTCCCCTCCCACCGCGGTCACCTCTGGT
TGGCGCGCCG------TCACGGCTTCTTCCACCGCCCCGGCGCGTTCACCGGCCTGGGCGAGGCCCGCGTCCAACCTGCG
GTCTTCTTCCCCACCGAGCTTGATCGCGGCGAAGAGCAAGCACCCTGGAAGGCGGTGCTGGAGGCGGTTGCGGAGCCTTA
CCACGACTCACGCGCAGCCACCGACGGCGAGCAAAAGCCGTTTCATGCCAAGGAGGAGGGACAGGAGAACGAGGCAGTGA
AG------------------ATGGCGAGGAGGTTCGGTCACTGCGTCGGCCTCCCCCACCGCCACCACCACGACCAGGAA
GAGAAGGACAAACGA---CAACCACGGGCAGGACAAGGATGAAGACATGAACACGAAGCTGCTCGGACGCTTCCACCTCC
ACGCACACGACGGCGACCACGAGGCTGGCGAACTAGAAGTACTGGCGAGCACGAG---------------------GAGG
AGCTTCAACCACGGCGACCACCACCTCGGGGCGGAG---GAAGGCGGCGTGAAGAAGTGGTTCAAGGGCCTCATGAACCG
ATTCTAGACATGCATGCATACCGCCCAGGGCGGCTGG--TTT--AATTACTCTGAATAATGTGTGCTCTGCACCTCCGCG
--------TCTGCGTGGCGCGTCGATCGGCTGTT----------------------------------CTACCATTTCGT
TTG----CCTTCGGGTTATTTCACACTATATTACGGCTTCGGTTTATGTA---------------------CTGGTGTGC
TACTGGTGAC-TTGTGAGGGTTGTGAAATTGTTACGAGTAGCAACGTTACGTGTTTCTCATAACTACATGTAATCACTTT
GCCTTCTTATGTACTCGCTTTGTTTCATAATTTTTATTGTGCTTGTAGTTCAAATTTGATCTAAAACCGCAGCAAGAATT
ATGGAACCACGCGAGTATATTGCACGCATTATTATGCTCATCACTCTTTTTTTCCCTGATGTGAACATAGTCTGTTCATC
TCGCTTTTCGCATCAAGCTTCAGTACTGTTAACAGTTCCGTCATGTTCCTTATATGTAGCAAGTTAATTAACTCTAGCAC
CCCTATACAAAACTTGCAACTCGGTATAC----TT--TTCTCTTTTGCAAGGGAGACGCTGTGCCCTTTCTTTTTTGGGG
GCTATTTCTT----------------GTCTCACACCTCTTCATCAACCG----ATATA--TATGCGCACAACCACTCTAT
TTACAAAGTTTTGAATCCTTAAAAAAACAAAATTAAGAGATAAGCTAGGGTTGAAGATTTCCTTTCTGTATTTTGTTTTT
CTCCTCACCAATATTCACAATTTTTAAAGAAATGCTGAAAAAA-TTGGTCTGGAAATCGAACATACGAGTATATATATGA
CTATAAGAATGGTGAGATCACTCTAAACCAGTACGGTACAACTTAAT
>chr3D_1
TTTTATTGTCTTTGTTCTTTCTACAAGTCCTTATCATTGTTTTGTTCTCCGGGACGGCGATTTGCTTCACAGGTCACAGC
TGCCGGCGTCTCCTGGTATTAATCGGCAA--CTTCCTAGCCGCTGCTTCTACAAGCTCCTGGGTTTAAAAATGGTTGCTC
CACTAAGCCAGACGCCCAGAGGCGGCATCGAGCAATGCTCATGGCGCACCGCCGGTGGATGCAGGAGGAAGAAGACTTTG
GCACCCCCACGAGATATGAATGTAATTTTATGTTTTCATATGGGTGTGTTTGTAAGGACATGTGATGCTTG--ATATATA
TGGGCCTTGGGCCCTTTCACACACAAAA-------AACACAACACATGCCTTCCAAATGATATTAACCAAAATCTAATTC
TAGAAAGAATGGAAAAGTAAGGGATTTCAGTCTGCCAAGAGGTTGAATATCTCTCCCGCGTCTGATCTTTGCAC----CA
TTTTGTTATTCAAAACCGTGACACAATTGACGCCATCACGTACGCAATTGGACCC-------CATCGACACACACTGGTT
CGCCTCTCGACGGTGGACAATGGACTCGTCGAATGAAAGGGTG-----ATGCAGTACACCAGACAGCTTCAGTTTAATTT
GCTATAAGTTATGCCTTTATATATGA--AGTGCAGCTAAGAAAAATATAGCTTGCAGTTCCACCGTTTCGAACGAACAAA
TGTTAATGTAGTCTAGCCACTCATGTGCCTGATGAAGCGTCAGTGCGTCACCGATATGATGGAATAAGTAAGTTAATTAA
CGC--CTCCTGCGCTAAGAGCTAAACTAGTTAGGTCAGCCTTGATTTGTTCTCCTAATATGCGGTGAAGAGGATGCATAT
ATATCGAAACTGAAATTTTAATTTTAAGCCAACGAACTATTTGACCGAATACTCAGGGCTAACAACTAAAAAAATTCATT
CCCATCCCGTGGCAAGCGCGATCAGCAATCTACAAATCTTCTTATATAGTAGAATGCATTCATTCCCAACTAA---AAAA
ATTCATTCATTTCTCCACTACAAATACCCCGTCCAGTCCGCTGCCCGCTCTCGTCTCAGTCCACAGGAGACGTTCTGC--
-TCCAGCCACCATGGCCCGCCTCGCCACCCTCGCCATGCTCCTCCTGTCCCTCCTGTCCGTCGCAAGCTGCCGCGACCTT
GAGGCCATCTCCGACGACCAGGGCCCACCCGTCCCCGTCCTCCTCACTCGAGCTGATCAAGCGGATGCTGCTGCTGAGGC
GACGACCCTTCCGAGCTTCCCGGCCCCGGTCGTCGCATGGGACGAGGACGAGCTCCCATCCCACCGCGGTCACCTCTGGT
TGGCGCGCCCGCGCCATCACGGCTTCTTCCACCGCCGCGGCGCGTTCTCCGGCCTGGGCGAGGCCCGCGTCCAACCTGCG
GCCTTCTTCCCCACGGAGGTGCTG---GGAGAAGAGCAAGCACACTGGGAGGCGGTGCTGGAGGTGGTCGCGGAGCCTGA
ACCCGACACCCA------CGG---------------------------C---GAGGAGGGTGAGGGGAACGAGGCAGTGA
AGGCGTGGAAAGTGGAGATGATGGCGAGCATGTTCGTCCACGGCGTCGGCCTCCACCACCGTCACCACCACGACCAGGAC
GAGGAGGAC----GA---CGACCACAGGCAGGGCAAGGATGAAGAAATGAACACGAAGCTGCTCGGACGCCTCCACCTCC
ACGCCCACGACGGCGACCACGAGGCTGACGAACTGGGAGAACTGGCTAGGAGGCTGGGCCCGGCGACCACGAGCACGAGG
AGCTTCAACCACGGCGACCACCACCTTGGGGCGGAGGAAGCAGGCGGGGTGAAGAAGTGGTTCAAGGGCCTCATGAACCG
ATTCTAGACATGCATGCATACCGCCCAGGACGGCTGG--TTT--AATTACTATGAATACTGTTTGCTCTGCACCTCCGCG
--------TCTACGTGGCGCGTCGATCGGGTGTT----------------------------------CTACCATTTCGT
TTA----CCT-----TCCGATTATTCCACATTACCGCTTCGGTTCATGTA---------------------CTGGTGTGC
TACTGGTGACTTTGTGAGGGTTGTGAAATTGTTACGAGTAGCAATGTTACGTGTTTCTTATAACTACGT--AATTACTTT
GTCTTCTTATGTACTCGCTCTGTTTCATAATTTTTATTGTGCTTGTAGTTCAAATTTAATCTAAAACCGCGGCAAGAATT
ATGGAACCAAGCGAGTATATTGCACGCATTATTATGCTCGTCACTCTTTATTTCCCTGATGTGAACATAGTCTGATCATC
TCGCTTTTTGCATCAATCTTTAGTACTGTTAACAGTTCCTTCACGTTCCTTATATGTAGCAAGTTAATTAACTCTAGCAC
CCCTATATATGTATGTATGTATGTATGTATGTATGTATGTATG-------------------------------------
--------------------------------------------------------TATGTATGTGCACAACCATTCTAT
TTACAAAGTTTTGAATCTTTAAAAAACCCAAATTAAGAGATAAGCTAGGGTTGAAGATTTCCTTTCCGTATTTTGTTTG-
CTCCTAACCAATATTCACAATTTTTAAAGAAATGCTAAAAAAA-T-GGTCTTGAAATCGAACATATGAGTATATATATGA
CTATATGAATGGTGAGATCACCCTAAACCAGTACGGTACAACTTAAT
>chr3A_904
AAA-----------------------------------------------------------------------------
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-----------------------------------------------------------------------AA---AAAA
ATCCATTCATTTCTGCACTACAAATATCCCGTCCAGTCCGCTGTCCGCTCTCATCTCAGTCCACAGGAGACGTTCTGC--
-TCCAGCCACCATGGCCCGCCTCGCCACCCTCGCCATGCTCCTCCTCTCCCTCCTGTCCGTCGCAAGCTGCCGCGACCTT
GAGGCCATCTCCGACGACCAGGGCCCACCCGTCCCCGTCCTCCTCACTCGAGCTGATCAAGCGGATGCTGCTGCTGAGGT
GACGACCCTTCCGAGCTTCCCGGCCCCGGTCGTCGCATGGGACGAGGACGAGCTCCCATCCCACCGCGGTCACCTCTGGT
TGGCGCGCCCGCGCCATCACGGCTTCTTCCACCGCCGCGGCGCGTTCTCCGGCCTGGGTGAGGCCCGCGTCCAACCTGCG
GCCTTCTTCCCCACGGAGCCAGATCGCGGAGAAGAGCAAGCACACTGGGAGGCGGTGCTGGAGGTGGTCGCGGAGCCTGA
ACCCGACACCCA------CACCCACGGCGAGCAGAAGCCGTTCCATGCC---GAGGAGGGTGAGGGGAACGAGGCAGTGA
AGGCGTGGAAAGTGGAGATGATGGCGAGCATGTTCGTCCACGGCGTCGGCCTCCACCACCGCCACCACCACGACCAGGAG
GAGGAGGAC----GACGACGACCATAGGCAGGACAAGGATGAAGAAATGGACACGAAGCTGCTCGGACGCCTCCACCTCC
ACGCCTACGACGGTGACCACGAGGCTGACGAACTGGGAGAACTGGCTAGGAGGCTGGGCCCGGCGACCACGAGCACGAGG
AGCTTCAACCACGGCGACCGCCACCTTGGGACGGAGGAAGCAGGCGGGGTGAAGAAGTGGTTCAAGGGCCTCATGAATCG
ATTCTAGACATGCATACATACCGCCCAGGGCGGATGG--TTT--AATTACTCTGGTTGGTGTGTGCTCTGCACCTCCGCA
TGACCGCATCTGCGTGGCG------TTGGGTGTT----------------------------------C-----------
-TA----CCT-----TCGTATTATTCCACATTACCACTTCGGTTTATGTATGCTCATACAATATATATGTGCTGGTGTGC
TACTGGTGAC-TTGTGAGGGTTGTGAAATTGT-ACGAGTAGCAACGTTATGTGTTTTTCATAACTACAT--AATTACTTT
GTCTTCTTATGTACTCACTCCATTTCATACTTTTTGTTGTGCTTGTAGTTCAAATTTGAACTAAAACCGCGGCAAGAATT
ATAGAACCCAGCGAGTATATTGCACACATTATTATGCTCATCACTCTTTATTTCCCTGATGTGAACATAGTCTGCTCATC
TCGCTTTTCCCATCAAGCTTCAGTACTGTTAACAGTTCCTTCATGTTCCTTGTATGTAGCAAGTTAATTAACTCTAGCAC
CCCTATAAAAAACTAGCAACTCGGTCTTC----TT--TTCTCTTTTGCAAGGGAGACGTTCTCGCCTTTCTTTTTGGGCC
-CTATTTCTTTTGAAATGGCTAGAATGTTTCACACCTCTTCATCGACGGATATATATATATATCTGCACAACCATTCTGT
TTACAAAATTTTGAATCCGTAAAAG-CCCAAATTAAGAGATAAGCTAGGCTTGAAGATTTCCTTTCTGTATTTTGTTTG-
CTCCTAACCAATATTCACAATTTTTAAAGAAATGCTAAAAAAATT-GGTCTTGAAATCGAACATATGAGTACATATATGA
CTATAAGAATGGTGAGATCACCCTAAACCAGTACGGTACAACTTAAT
>chr3B_1687
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-------------------------TCGTGGTGGAG---GAAGGCACGGCGAAGAAGTGGTTCAAGGGCCTCATGAACCG
ATTCTAGACATGCATG--TACCACCCATGGCAGCTTGCTTTT--AATTACTCTGGTTGATGTGTGCTCTGCACCTCCACG
--------TCTGCGTGCCA------TCGGGTGTTCTACATTTTTTTTCAAGCACACGCAAGAGATGTGCTACCATTTCGT
TTAATGACCT-----TCGTATTATTCCACATTACCACTTCGGTTTATGTATG-------------TATGTATTGATGTGA
TATTGGTGAC-TTGTGAGGGTTGTGAAATTAC-ATGAGTAGCACCGTTAAGTGTTTTTCATAACTACAT--AATTACTTT
GTCTTCTTATGTACCCACTCCATTTCATAGTTTTTGTTGTCCTT-----TCAAATTTGAACTAAAACCACGACAAGAATT
AGGGAACCAAGGGAGTATATTGT----ATTACTATGATCATCATATT-ATTTTCCCTGATTTGAACATAGTCTGCTCATC
TCACTTTTCCCATCAAGCATCAGTACTGTTAACAGTTTCTTCATGTCCCTTATATATAACAAGTTAATTAACTCTAGCAC
CCCTATAAAAAACTTGCAACTTTGGTGTTCTTTTTTGTTTCCTTTTACAAGGGAGACGATTTGCCCTTTCTTTTCCGGGG
GCAATATCTTTTGAAATGGATAGAATGTCTCACACTTCTTCGTCGACCG----ATATATGTATGTGCACAACCATTCTAT
TTACAAAGTTTCAAATCCTTGAAAAACTAAAATTAAGAG-----------------------------------------
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>chr3D_1687
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-------------------------TCGTGGTGGAG---GAAGACAGGGTGAAGAAGTGGTTCAAGGGCCTAATGAACCG
ATTCTAGACATGCATGCATACCGCCCAGGGCGGCTGG--TTTTTAATTACTCTGGTTGATGTCTACTCTGCACCTCCGCG
--------TCTGCGTGGCC------TCGAGTGTT----------------------------------CTACCATTTTGT
TTAATTACCT-----TTGTATTATTCCACATTACCACTTTGGTTTATGTATG-------------TATGTACTGGTGTGC
CATTGGTGAC-TTGTGATGGTGGTGAAATTGT-ACGAGTAGCAATGTTACGCGTTTTTCATAACTATGT--AATAACTTT
GTCTTCTTATGTACTCACTCCGTTTCATAATTTTTGTTGTGCTTGTAATTCAAATTTCAGTTTAAACCGCGACAAGAACT
ATGGAACCAAGGGAGTATATTGCACGCATTATTATGCTCATCACACC-TTTTTCCCTGATGTGAACATAGTCTGCTCATC
TCGCTTTTCCCATCAAGCATTAGTACTGTTAATAGTTCCTTCATGTTCCTTACATATAACAAGTTAATTTACTCTAGCAC
CCTTATAAAAAGCTAGGAAGTTAAGTGTTCTTTTT--TTTCCTTTTGCAACAGAGACGCTTTGCCCTTTCTTTTTCGGGG
GCTATATCTTTTGAAATGGATAGAATGTCTCACACTTCTTCGTTGACCG----GTATATGTATGTGCACAACCATTCTAT
TTACAAAGTTTCGAATCTTTAAAAAACTAAAATTAAGAG-----------------------------------------
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>chr3A_1694
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--------------------------------GGAG---TAAGACAGGGTGAAGATGTAGTTCAAGGGTCTCATGAACCG
ATTCTAGACATGCATGCATACCGCCCAGGGCGGCTGG--TTTTTAATTACTCTGGTAGATGTCTGCTCTACACCTCCGCG
--------TCTGCATGGCC------TCGGGTGTT----------------------------------CTACCATTTCGT
TTAATTACTT-----TCGTATTATTCCACATCACCACTTTGGTTTATGTATG-------------TATGTACTGGTGTGC
TAATGGTGAC-TTGTGATGGTTGTGAAATTGT-ATGAGTAGCAATGTTACGCGTTTTTCATAAGTATGT--AATAAATTT
GTCTTCTTATGTACTCACTCTGTTTCATAATT--------GCTTGTAATTCAAATTTCCACTAAAACTGTGGCAAGAACT
ATGGAACCAAGCGAGTATATTGCATGCATTATTATGTTCATCACACC-GTTTTCCCTGATGTGAACATATTCTGCTCATC
TTGCTTTTCCCATCAAGCATCAGTATTGTTAACAGTTCCTTCATGTTCCTTATAGTAG----------------------
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>SNPs
--------S--SS---S-----------S--S---S-------S---------S---------S----S-SS---S---S
S--S-S-----------SSS---SSSSSSSS----S----S-S----------------------------S--------
-S-SS-----------S-----S--------S-S-------------S--------------------------------
---------S--------------------S----SS------S-------S-----------------S-SS-------
----S------------S------SS--SSSSSSS----------------------S-S--------------------
------------S----------------------SS----SS--------------S-----------SSS-SSSSS--
-S--------SS-------------S-----SS----S----------------SSSSSSSS----------S---S---
--------------S--------------------S-------SSSSS---------------S-SS-------------
----S---S---SS----------SSSS------S--S-------S------------------------------S---
---------S------S--S--------S--SS----------------------S--------S-S-------------
---SS---------S-----------------------------------------------------------------
--------S---------------S------------S--------S------S-S--SSS-SSSSSSSSS-SS------
-------------------------------------------------------S--------S---SSS--SSS---S
-S-S----S---------------------------S-SSSSS-SSSSS-----------------S------SS-S-SS
S----------------------------------S-----------------S--------------------------
--------------------------S-------------------------S------S--------------------
-----------------------S-----S---------------------------S----------------------
---------S--------------------------S----------S--------------------------------
-S------------S-----S--------S-------------S----S---------------S---S---------S-
S-S----S-S-SSSSSSS----S----------S--------S------SSS--------SS---S--------------
----------------------------S-S-----SS---S------------S------------------------S
---S-----SSSS------S-----S-------------------S------------------------S---------
----S----------------------S------S-S--S------S--S-S-SS-------------------------
-----------------------------------------------S--------------------------------
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-----------------------------S--------------------------------------------------
--S-------SSSSS--S-S-S-SS-S-S-----S---------------------------------------------
---------------------------------------------------------------------SS---S-----
-S-----------------S--------------------------------------------------S---------
---------S----------------------------------------------------------------S-----
---------------------------------------S----------------------------------------
-------S-----------------S-S--------------------------------S--------------S----
--------------------------------------------S-------------------S---------S-----
--------------------------S---------------------------------------------------SS
-----S------------------------------S--------S-----S-------------S--------------
---------------------S-------------------------
>forward_596
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----------------ACGGTAGACTCGTCGAATGC--------------------------------------------
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>reverse_1571
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--------------------------------------------------AGGAGGAGGGACAGGAGAAC----------
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>forward_951
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---------------------------------------------------CTTAAGGGCGATCCACCTCC---------
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>reverse_1888
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-----------------------------------------------CGTGAAGAAGTGGTTCAAGGG------------
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