>input_sequence_75808
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-------------------------------------------------ATGGGTTTGAACAAAGCTCTGCGTTGGCTGC
CACGTTCCTCTGCCAGTCCCCGTCTGGAGGAAGACGAAGACAACAACGAGAGGAACGGGCTGCTGAGGAGCCACCGGGAT
CAGAACCGGGTGGTGCCCGTGACGGGTCTCCATGTTGACGAGCAACCCGAGGCAGGTGCGCATGTGGAGCCCAAGGTAAG
CTAGCGCTTGATTCCGGAAATGCAAGCGGAA------ATTTACCTCAAGACGTGGCCGTAACTTGTGGCACCTAATGTTT
CCCTTGCATTGGCATGGCATGGCGCAGACCGTGGCCCTGAAGGTGTCGATGCACTGCCATGGCTGTGCGAGGAAGGTCGA
GAAGCAGATCTCCAAGCTCCACGGTAGGCGATCAAGTGTACTACTACAAGTGTACATACTATGAGAGTATGAGTTGCCTC
TTGTTGTGCAGGAGTTGTGTCCATCAGAATAGAGCTGGGGATGAAGACGGTGACCGTGGTTGGCAACGTGACTCCCATGC
AAGTCCTGGAGACCGTCTCCAAGGTGATCAAGTACGCGCACATTCTGCCGCTGCCCTAG---------------------
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>chr3B_1_TraesCS3B01G244200
TATGATTTATGTTGTGGCAGGTCTTATAGATGCCTGCTCGTGCTGTAGTTATCTGATGGGGGTCGCTTCACAGCAGAGCA
GGGGGTGCATTTGTTGCTTGAGTTGTGGTAAGCCTGTTTTTCAGGAGCAGCGA---AGAAATGCACTTTAGAGTTTTGGT
GAGAATGCAACTAATTGCACATCATGAAATTTTAGGTGTTGCTTGGTCGAAATGGCTAATTTGTTGGTGGCATCTGAAGA
CGTGAGCGGTTGTTGAAGAGAGGTTTGAATAATGATCTGTGTTGATTGATAAAGAAAGGCAAGAATGGCTTTTAGTACAT
TTTGTTAGTGACTCGAGTTTATGTCGGTCTGAGTTCTGATGTACCTATGTATCTATCCTCCAATAGTGGTATTGGCAAGA
GCAAGTGGCTTTGTTGCTGCAGTTTGTATCTTTTGGAGTATGTGGGAATGTGGGTGAGATTTGTCAATTTTGTGCCTGAT
GAGTGCCCAATCGATTGTGTTCAATTGTGTGCTACTCCCTCCGTCCGAAAATACTTCCAGATTCCAAATGAAGAAATGGA
AACTCGAAAAGGATCCTTCTGATTCTTAAAGAATGAGTCATCAAAATGGACAAAAAGGATGTATCTAGAACTAAAATACA
TCTAGATACATCTCCTTTTATTCATTCTGATGACAAGTATTTTCTTTATTCATTCTGATGACAAGTATTTTCGGACGGAG
TATTTCCGGACGGAGGGAGTACTTCGGTTCGATATTATCACATTACTAAATTGACGGCAGT-TTGTCTTAGTCACAACCA
-AATCATTCAACTGCTCGCCTAACCGTTTAGTTGGACGGATGGATCTACCAGCGACTT-GCTGAGGATCTTTTCTTCTAG
GTTGGTGGTTGATCTAA---GTATCCCTGATAATATTGGTTGCCTGATGCATGTAGATTAGCACATGACGCGCCTGCAGT
ACCTCTATATGTGAGTGACATTCATATCCCAGTAGACATGGCTTCAACGATGGGTTTGAACAAAGCTCTGCGTTGGCTGC
CACGTTCCTCTGCCAGTCCCCGTCTGGAGGAAGACGAAGACAACAACGAGAGGAACGGGCTGCTGAGGAGCCACCGGGAT
CAGAACCGGGTGGTGCCCGTGACGGGTCTCCATGTTGACGAGCAACCCGAGGCAGGTGCGCATGTGGAGCCCAAGGTAAG
CTAGCGCTTGATTCCGGAAATGCAAGCGGAA------ATTTACCTCAAGACGTGGCCGTAACTTGTGGCACCTAATGTTT
CCCTTGCATTGGCATGGCATGGCGCAGACCGTGGCCCTGAAGGTGTCGATGCACTGCCATGGCTGTGCGAGGAAGGTCGA
GAAGCAGATCTCCAAGCTCCACGGTAGGCGATCAAGTGTACTACTACAAGTGTACATACTATGAGAGTATGAGTTGCCTC
TTGTTGTGCAGGAGTTGTGTCCATCAGAATAGAGCTGGGGATGAAGACGGTGACCGTGGTTGGCAACGTGACTCCCATGC
AAGTCCTGGAGACCGTCTCCAAGGTGATCAAGTACGCGCACATTCTGCCGCTGCCCTAGCGATGCTGTTTCCCGGTCCAC
CGTGTGGTGATAGCACTTCTCTTTGATGAAAACGATGAGCGCTATCCCTCTTTTTTCTC---------------------
----------CTTCTTTTAGCGCTCAATCTGTATCCTGAAAACAGAAAATCATATGTAGATTGTCATTTCAGGAGCCACC
CGTGTCCTGGGCTCCTGGCAACTCGATCGTCTCA----------------------------------------------
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--------------------------------TCAATCTGAAATATGTTGTTTGTGGTGGA-----------ATCAGCCC
ACCATCAGGGTCTACTTGTGCTTGCATTTTTTCTGAATTTTTTTCAGACTTCCGGTGATGTTTGTTCAGTGGGAGAGAGG
AGACATTTCTGTCGACTATGGAGAGGCGTGCGATGACTTCGTCAATCTCAAGATGACGTGTCGGCTTTATCTCTCAAAGG
TGCTCATAGGGGCAGCGCGTATGTTCGTGCGCATAGGATGAATGTATGTTCGTATATATGAGCGCCTATGTTGGTGCCGT
GTTAAAAATAATCTCAAAAA-TGTTTTCCGTCTTAGGGCATCTCCAATGCTGATCCTCGTGTTAAAAATAATCTAAAAAA
TGTATTCGTCTTAGGGCATCTCCAATGCCGATCCTCGAATCACGCGCATCCGTCTGGATCGAGTGGTCCGAACGCATTTT
GACATCCAACACGGTACCTCATCGATCCGTGGACCGGTCCGGACGTCCGTTTTCCCGCAAACCAAAGGCAAAGCAGGGAG
CTTTACGGGCGTCTGGACAGCTGCCATGCACACGCCAAAAACTCGGACGGGACGTCCATCCCAGTCATGATAGCAATCAG
GATAACTCCTCGGGCCGCACACCTCATCGATCATCACATAGTGGAACCACATGCCGTTCCCGGGGGCTGCATAGACAACC
CAATACGACGCGTCGAAGTACTCCGTGGAGATACCGACGACTTCCTTGGACTTTACGCCATTATATGCATTGATGTCCAC
TTGTGTCTTTGGACAATAGCTGGGTTGTCTGGCTCCTATATTTACTCCCTACGTTTCCGC
>chr3D_1
TATGATTTATGTTGTGGCAGGTCTTATAGATGCCTGCTCGTGCTGTAGTTATCTGATGGGGGTCGCTTCACAGCAGAGCA
GGGGGTGCATTTGTTGCTTGAGTTGTGGTAAGCCTGTTTTTCAAGAGCAGCACTTGAGAAATGCACTTTAGAGTTTTGGT
GAGAATGCAACTAATTGCGCATCATGAAATTTTAGGTGTTGCTTGGTCGAAATGTCTAATTTGTTGGTGGCATCTGAAGA
CGTGAGCGGTTGTTGAGGAGAGGTTTGAATAATGATCTGTGTTGATTGATAAAGAAAAGCAAGAAGGGCTTTTAGTACAT
TTTGTTAGTGACTTGAATTTATGTCAGTATAAC-TCTGATGTACCTATCTATCTATCCTCCAATAGTGGTATTGGCAAGA
GCAAGTGGCTTTGTTGCTGCAGTTTGTATCTTTTGGAGTATGTGGGAATGGGGGTGAGATTTGTCAATTTTGTGCCTGAT
GAGT--GCCCAA--------TCAATTGTGTGC------------------------------------------------
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-------------------TACTTCGGTTCGATATGATCACATTACTAAGTTGACGGCAGTGTTGCCTCAGTCACAACCA
CAGTCACTCAACTAATCGCCTAATCGTTTAGTTGGACGGATAGATCTACCAGCGACTTTGCTAAGGATTTTTTC-TCTAG
GTTGGTGGTTGATCTTCTTCGTATCCCTAATAGTATTGGTTGCCTGATGCATGTAGATAGCACCTCTA------------
-----TATATGTGAGTGACATTCATATCCCAGTAGACATGGCTTCAACGATGGGTTTGAAGAAAGCTCTGCGTTGGATGC
CACGTTCCTCTGCCAGCCCCCGGCTGGAGGAAGACGAAGACAACAACGAGAGGAACGGGCTGCTGAGGAGCCACCGGGAT
CAGAACCGGGTCGTGCCCGTGACGGATCTCCATGTTGACGAGCAACCCAAGGCAGGTGCGCATGTGGAGCCCAAGGTAAG
CTAGCGCGTGATTCCGGAAACGCAAGCGGAAGCGGAAATTTACCTCGAGATGTGGCCGTAACTTGTGGCACCTAATGTTT
CCCTTGCATTGGCATG-CATGGCGCAGACCGTGGCCCTGAAGGTGTCGATGCACTGCCATGGCTGTGCGAGGAAGGTCGA
GAAGCAGATCTCCAAGCTCCACGGTAGGCGATCAAGTGTACTACTACAAGTGTACATACTATGAGAGTATGAGTTGCCTC
TTGTTGTGCAGGAGTTGTGTCCATCAGAATAGAGCTGGGGATGAAGACGGTGACCGTGGTTGGCAATGTGACCCCCATGC
AAGTCCTGGAGACCGTCTCCAAGGTGATCAAGTACGCGCACATTCTGCCGCTGCCCTAGCGATGCTGTTTCCCGGTCCAC
TGTGTGGTGATCGCACTTTTCTTTGATGAAAACGATGAGCGCTATCCCTCTTTTTACTC---------------------
-------------CTTTTAGCGCTCAATCTGTATCCTGAAAACAGAAAATCATATGTAGATTGTCATTTCAGGAGCCACC
CGTGCCCTGGGCTCCTGGCAACTCGATCGTCTCA----------------------------------------------
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--------------------------------TCAATCTAAAATATGTTGTTTGTGGTGGA-----------ATCAG---
--------GGTCCACGTGTGCTTGCA-TTTTTCTGAATTTATTTCAGACTTCCGGTGATGTCTGTTCAGTGGGAGAGAGG
AGACAGTTATGTCGACTATGGAGACGCGTGCAATGACTTCGTCAATCTCAAGATGATGTGTCGGCTTTATTTCTCGAAAG
TGCTCATAGGGGTAGGGCGTACGTTCGTGCGCATAGGATGAGTGTATGCTCGTATATATGAGCGCCTATGTTGGTGCCGT
GTTAAAAATAATCTCAAAAA-TGTATTCCGTCTTAGGGCATCTCCAACATTGGC--------------------------
--------------------------------CCTCGAATCGCGCGCATCTGTCTGGACCGAGTGGTCCGGATGCA-TTT
GACATCCAACACGGTACCTCATCGATCCGTGGACCGGTCCGGAGGTTCGTTTTCCCACAAACCAGAGGCAAAGCAGGGAG
CTTTACGGGCGTCTGGACCGCTGCCATGCATGCACCAAAAACTCGGACGGGACGTCGATCCCAATCATGATAGCAAATAG
GATAACTCCTCGGGTCGCACACCTCGTTGATCACCACATAGTGGAACCACAGGCCGTTCCCGGGGGCTGCATAGACAACC
CAATACGACGCGTCGAAGTACTCCGTGGAGATATCGACGACTTCCTTCGACTTTACGCCATAATAAGCATTGATGTCCAC
TTGTGTCTTTGGACAATAGCTGGGTTGTCTGGCTCCTATATTTACTCCCTACGTTTC---
>chr3A_1
TATGATTTATGTTGTGGCAGGTCTTATAGATGCCTGCTCGTGCTGTAGTTATCTGATGGGGGTTGCTTCACAGCAGAGCA
GGGGGTGCATTTGTTGCTTGAGTTGTGGTAAGCCTGTTTTTCAAGAGCAGCACTTGAGAAATGCACTTTAGAGTTTTGGT
GAGAATGCAACTAATTGCGCATCATGAAGTTTTAGGTGTTGCTTGGTCGAAATGTCTTATTTGTTGGTGGCATCTGAAGA
CATGAGCGGTTGTTGAAGAGAGGTTTGAATAATGATCTGTGTTGATTGATAAAGAAAGGCAAGAAGGGCTTTTAGTACAT
TTTGTTAGTGACTCGAGTTTATGTCGGTATGAGTCA-GATGTACCTATCTATCTATCCTCCAATAGTGGTATTGGCAAGA
GCAA--GGCTTTGTTGCTGCAGTTTGTATCTTTTGGAGTATGTGGGAATGTGGGTGAGATTCGTCAATTTTGTGCCTGAT
GAGTGCGCCCAA--------TCAATTGTGTGC------------------------------------------------
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-------------------TACTTCGGTTCGATATGATCACATTACTAAGTTGACGGCAGTGTTGTCTCAGTCACAACCA
-AGTCACTCAACTGCTCGCCTAATCGTTTAGTTGGACGGATAGATCTACCAGCGACTTTGCTAAGGATCTTTTC-TCTAG
GTCGGTGGTTGATCTT---CGTATCCCTAACAATATTGGTTGCCTGATGCATGTAGATAGTACCTCTA------------
-----TATATGTGAGTGACATTCATATCCCAGTAGACATGGCTTCAAAGATGGGTTTGAAGAAAGCTCTGCGTTGGATGC
CACGTTCCTCTGCCAGCCCCCGGCTGGAGGAAGACGAAGACAACAACGAGAGGAACGGGCTGCTGAGGAGCCACCGGGAT
CAGAACCGGGTCGTGCCCGTGACGGATCTCCATGTTGACGAGCAACCCAAGGCAGGTGCGCATGTGGAGCCCAAGGTAAG
CTAGCGCGTGATTCTGGAAACGCAAGCGGAA------ATTTACCTCGAGATGTGGCCGTAACTTGTGGCACCTAATG---
-CCTTGCATTGGCATGGCATGGCGCAGACCGTGGCTCTGAAGGTGTCGATGCACTGCCATGGCTGTGCGAGGAAGGTCGA
GAAGCAGATCTCCAAGTTCCACGGTAGGCGATCA-GTGTAATACTACAAGTGTACATACTATGAGAGTATGAGTTGCCTC
TTGTTGTGCAGGAGTTGTGTCCATCAAAATAGAGCTGGGGATGAAGACGGTGACCGTGGTTGGCAACGTGACCCCCATGC
AAGTCCTGGAGACCGTCTCCAAGGTGATCAAGTACGCGCACATTCTGCCGCCGCCCTAGCGATGCTGTTTCCCGGTCCAC
TGTGTGGTGATTGCACTTTTCTTTGATGAAAACGATGAGCGCTATCCCTCTTTTCTCCCTTCTTCTTTTTTTTTAAACAT
TTTCTCCCTTCTTCTTTTAGCGCTCAATCTGTATCCCGAAAACAGAAAATCATATGTAGATTGCCATTTGAGGAGCCACC
CGTGTCCTGGGCTCCTGGCAACTCGATAGTCTCATCTTTATCTTTACCTAATAATAAAGCAAATTGAGTTTTTTTCGTCT
GTCATGACATTTTTCAAAAATGTCCCTCTATTTCAGAGAATTCAACCCGCTGTCCTGTGTTAAGTTAAAACGACGTTATT
TTCATATTTTATACAATAGTCTCTGTCTTTTCTTAAAATCAACCCGCCATCCGGATTTAAGTCACACCTAAGCCGTTATT
TTACATTTTTCGAAATCCCTCCTGATGTTTTAGGTAATTCATCTATGGATCATATTTAAGTCAAACAAATGCTTTTTAAA
ATAATCCATATCTTTTAGACCATAACTCCGATTTGAACATGTTATATATGTAATTTGATTAGAAAAATATATAGAATATG
AATATGATATTATTTTTACCTGTTAAGTATTTTTAAATATTGTTTTAGAATATATTTGAGTCAAACCAAATGATTTTCTA
AATTATCTGTATCTTTTAAATCGTAACTTCGATTTTAACATATTATATATGAAATTTTATTAGAAAAATATGTGGAATCT
AAATATGATGTTAATTTTACCTGTTAAATATTTTTAAAATATTGTTATGAAAACAAACTTATAATTTATAGCGCAAGATT
TTTTTATACCGATGATGATCCGGATTGCAAATAAACACCCTACTATAACCATGTAAAAAAAAGAAAACATCGATAACTAC
ACATGCATACCTCTGAAAAATATCGCAGGGGAAAACAACATATTTCTCATCGCAAGAGTGAGAGAGAGAAAGCGAGCGAG
AGAGAGAGAGAGAGGAAGGAGAGAGAGAGGAAGGAGAGAGGGAGAGAGAGACGCCTTAGGATTAACCATATTCAACACAC
GTTTTTTGTTGTTTTGTGTGAACACCGAGGCTATCGCCGGCGAGGGTGAGAAGAAGGATAAGCGGCAACACAAATATGAT
GCCTCGCAAAAATAAAGGAGATGGACCTATTGTGGTCTTGAGTGATGGTTGTTGAGTTAAGAGCGTGTGTTATGTTTTCT
CTCCCATTGCAGCGCACGGGCTCTTTTGCTAGTCAATCTAAAATATGTTGTTTGTGGCAGACTCAGCCCACCATCAG---
--------GGTTTACTTGTGCTTGCA-CTTTTCTGAATTTATTTCATACTTCCGGTGATGTTCGTTCAGTGGGAGAGGGG
AGACGTTTCTGTCGACTATGAAGACGCGTGCGATGACTTCGTCAATCTCAAAATGATGTGTCGGCTTTATCTCACAAAGG
TGCTCATAGGGGTAGGGCGTACGTTTGTGCACATAGGATGAGTGTATGTTCGTATATATGAGCGTCTATGTTGGTGCCGT
GTTAAAAATAATCTCAAAAAATGTATTCCGTGTTAGGTCATCTCCAACGCTGAC--------------------------
--------------------------------CCTCGAATCACACGCATCCGTCTGGACCGAGTGGTCCGGACGCATTTT
GACATCCAACACGGTACCTCATCGATCCGTGGACCGATTCGGACGTCCGTTTTCCCGCAAACTAGGGGCAAAGCAGGGAG
CTTTATGGGCGTATGGACCACTGCCATGCACGCGCCAAAAACTTGGACGGGACTGCATAAACAATCCAATACAACGTGTC
GCACACCTC---GGTCACACACCTCGTCGATCACCACATAGTGGAACCACATGCCGTTCCTGTGGGCTGCATAAACAATC
CAATACAACGTGTCG-----CTCCGTGGAGATACCGACGACTTCCTCAGACTTTACGCCATTATATGCATTGATGTCCAC
TTGTATCTTTGGACAATAGCTGGGTTGTCTGACTCCTATATTTACTCCCTACATTTCCGC
>SNPs
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-------------------------------------------S-------SS---------------------------
------------------S-----------------------------------S-------------------------
-----------------------------------------------------------------S--------------
----------------------------S-------------------S-------------------------------
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------S-SSSSSSSSSSSS------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS----------------S-------------S------------------S-----------
--S---S----------------S-----------------S--------------------S-----------S-----
---------------SS-----------S-----------------------------SSSSS-SSS-SSSSSSSSSSSS
SSSSS-------------------------------------------------------S---------------S---
----------------S-----S---------------------------------------------------------
-----------S-------------S----------------------S-------------------------------
-------S------------S-------------------------S---S-----------------------------
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S----------S------S-------------------------------------------------------------
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---------------------------------------S-------------------------------------SSS
SSSSSSSS------------------S-------------S---------------------------------------
------------------------S-------------------------------S-----------------------
------------S--S-----S-------------------S--------------------------------------
------------------------S----------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------S-----------S---------
----------------------------------------------------------------S---------------
------------------S------------S------------------------S------S-------------S--
--------------S----------S-------S----------------------------------------------
-----------------------------------------------S--------------------------------
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>forward_738
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TATTTCCGGACGGAGGGA--------------------------------------------------------------
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>reverse_3062
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---------------------TGTTCGTGCGCATAGGATGA---------------------------------------
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