>input_sequence_75804
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-------------------------------------------ATGGCGCCTAATGGTGACGCGGCGGTGGCGGCGGC--
-GGAGGCGGTGCCGATGGGGCGGCCGAGGCAGCAGCAGAAGCCGCGGAGGATCTCGATGGAGGGGCTCCAGCGCGCCATG
TCCGACCTGGCCCTGGAATTCACCAAGAAGGCGGCCGTGCTGGACGCGGCGGCCAGGCTGCCGGCGGTGTCGGAGCAGGT
GGACGACGCGCGCTGCGAGTGCTGCGGCATGACGGAGGAGTGCTCGGCCGAGTACGTGCGGCGCGTGCGGGAGCGGTACT
GCGGGCGATGGGTGTGCGGGCTCTGCGCGGCGGCGGTGACCGACGAGGCGGACAGGAGCCGGAGCACCACGGAGGAGGCG
CTGGCCGCGCACATCGCCGTGTGCGGGCGGTTCAACCGGCTGGGGCGCGCCAACCCGGTGCTCATGCAGACGGAGGCCAT
GAGGGAGATCTTCAGGAAGAGGGGCAAGTCCAACAGTCCCAGGGACGGCGCGAATGCCGGTGGCCTCGCCAGGAGCTCCA
GCTGCATGTCGGCCATCACCAAGGACCTCAACTGTACCATTAAAAAATAG------------------------------
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>chr3A_1_TraesCS3A01G312200
CACCTTAATACAGTAGTTGATAAACAGATCGTAAGTTTTCTTGAGAAAAAAAACAACGCAAAAGCTTTGCCAAAGAATTT
ATGTACAAGAAAGAGGACAAGTAACCAGCCTGCGATTTTCAACAGTTTGGAGAGAGAAAAATATAGAAGCAATGGCACCA
CTGCAAGTTGAGACCATGCATGCATAAATAACGGGCCTATCTCGACAATGGCGGCAATTAGCGCTATTCTTCCTTCTGAT
TGTGTTGTCGCGGAGCTTGAATGTTTTAGGGCGTAGCGTGACGGTGTATTCAGTTGTTTCAATGTTCTCTTCTGGTAGCA
TAGTCTTATGAGATCTGGTTATTCTGGGATCGGTGTTGTATGAGGGCTACTTCACCATCTTATATCGTTGGGCCGTATAC
TTTGTTCGAGTGTTGCTTTGTATGTAAAGCGGGACGAAAGTCACTTTCGGTAATCCTTGAAATTATGATTTACGCGTATC
GCAAACACTAGTA-CTAGCTAGCT--------------------------------------------------------
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----------------------TGCTGCTACTAC--------T-------------------------------------
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---------------------ATTACTCGTGGATAAGAAAATTCGAGCAGGTTGAT---GAGGTAG--CTGCCACCTTCC
CAAGCTACATTAAGATCTCGGTCACGGGTCACGAGCATGAGACGTTGAGGCCCTGTATAGC--TCAGCACTAGCTGAACC
AAGTAACCGTTAGCTAATCGTAGCCATATGAATGTTGAGAGATGTACAGCTTCCAAGTGATCTCTCTCGCCTTCTTAATT
ATGAATGTCACGAGCAGAGACTAGCTACCGACTCGCCCTCTCCACACGTATCCGCGCCGCTCCGTGAGCGGCGAGGTGGA
TGCATGCGTACCCTACCCCTCGACGGTATATAAAGCTCGGCTCCTCCTTCTCATTGATATTCAACTCACACTTGCAACCG
ATCAGAGTTCACTAGCTGCTAGCTGCTAGACGTCAGCTGCTTTGATAATCAGCCAGAGCTTTCCA--GTTAGTTTGTGGT
TGGCTTCTTGCATCGAGGGTAGCTAGATC---------GATCGATGGCGCCTAATGGTGACGCGGCGGTGGCGGCGGC--
-GGAGGCGGTGCCGATGGGGCGGCCGAGGCAGCAGCAGAAGCCGCGGAGGATCTCGATGGAGGGGCTCCAGCGCGCCATG
TCCGACCTGGCCCTGGAATTCACCAAGAAGGCGGCCGTGCTGGACGCGGCGGCCAGGCTGCCGGCGGTGTCGGAGCAGGT
GGACGACGCGCGCTGCGAGTGCTGCGGCATGACGGAGGAGTGCTCGGCCGAGTACGTGCGGCGCGTGCGGGAGCGGTACT
GCGGGCGATGGGTGTGCGGGCTCTGCGCGGCGGCGGTGACCGACGAGGCGGACAGGAGCCGGAGCACCACGGAGGAGGCG
CTGGCCGCGCACATCGCCGTGTGCGGGCGGTTCAACCGGCTGGGGCGCGCCAACCCGGTGCTCATGCAGACGGAGGCCAT
GAGGGAGATCTTCAGGAAGAGGGGCAAGTCCAACAGTCCCAGGGACGGCGCGAATGCCGGTGGCCTCGCCAGGAGCTCCA
GCTGCATGTCGGCCATCACCAAGGACCTCAACTGTACCATTAAAAAATAGTCAG-GGAGTGTCCGACGTCTTTTCCGGCT
GGCTGG--GCAGGCCAACGCAAGAGGATCGTGAAAACTACGTATATCTCATAAAGCTATGTATGTACATACAGCTCAAGC
TCAGTGTGGAATCATCAGTGGTATATGCTGTATGATATTCGGAAGTAAGGTTTAGCTAAACAAAGAAAAAGAAAAATTCA
GGTACTATTGGTAAAGGGCTCGTTGAGAACGAAGGAAATTTGTCCACCTGTAAAGCCTTTCGGGCTTGTTTTTGTTTTTG
GTTTATACAGGGTAATAACATATGTGTATGTGTGTCAGATTGAACCTGTTGAAGTATATACAGTTTGTGAGGCTTGGTTC
AGAAGGAGAAAAAAGAATCAGATATTAGTAAGAGACTGTTTCAGAACGAAGGAAGTTTACATGCTTTATCGTTGAAGTTT
TTTCCTTTTGCCCTCTACGATCCGTTTGCTCTCTAACATGTACTCCCTCCGTTTCATAATGTAAAACGTTTTTTTAACAC
TAGTGTAGTATGAAAAATTGTCTTACATTATGAGACGGAGGGAGTATGTATAAAATTTATCTTTTCAAGGCAACAAGTGT
ATATACTCCCTCTTTCATAATGTAGTGCATATAGATTTCTTGAAAAGTTAATCTCAGTAAACTTTGACCAAGTTTATAGA
GAAAATTGTTTACATCTAGAATATCAAACATGTACAGTATGAAAATATATCCCATGCATGATGTATATGATGATATGCAT
TTGATATTCTAAATGTAGATAGTTTTCTCTATAAACACCATTAAACTTTGCAAAGTTTGACTATTGAAAAAAAATGTCAG
CACTACACTATAAAACAAAGAGAGTATTATATATGCTTATGGAATTTTTTATGTGAATCTTGGTAGAATGTTTCACCAAT
AATTTCATCTCCATTGTGCTATGGCGTGCTCCAGTGCCACGGAGGTCAAACTATTGTTGGTCATAATTTTTTAAGTATGT
TGTTAATTTTTTA
>chr3B_92
AGAGGACAAGT---------------------------------------------------------------------
-------------------AGTAACCAGCCTGCGACTTTCAATAGTTTGGAGATG---AAAAATAAAAGCAATGGTACCA
CTGAAAGTTGAGACCATGCATGCATAAATAACGGGCTTATGTCTTTCCAATTAAGAT-----------------------
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--------------------------------------------------------------------TTTTCGCGTACC
ACAAACACTAGCTACTACTCCAGCCTACTGCTACTGCTACTTTTTTTTTAAATACGGTACAAACGCAAGCATTTATATAC
ACACGTATACACTTATCCCTAAATGCGAGCATCATCATTTAAACCCTGGTGGGCTGGAATACCATAATCCCTCTAATCAT
TCAATCACGGATTGGTTCGCGCTGCTACTGCTACTAGTATATAGGGCCTGTTTGGTTTCAAATAAGTCACCAACTTATAA
GTCGAAAAGTAAAAAAAGTGACTTATTTTGCCAAACAGACCCGACTTATAAGTCACTCCGACTTATAAGTCATAAGTTGC
TCCACCCCAACTTAAAACTTATAAATCACCTCCTTTTGCATGGGTCCCACCACTTGCATGATGTTGATTGGTGTGAAAAG
GTATGGAAAGGTGACTTATAAGTCAGGTGACTTATTGGAACCAAACATGCCCTAAGTCATAAGTTGCTCCACCCCAACTT
AAAACTTATAAATCATCCCCTTTTGCGTGGGTCCCACCACCTGCATGATGTTGATTGGTGTATGAAGGTGTGTTAGGTGA
CTTAGCCAGGTGACAACCAAACAAATGTGACTTATAAGTCACTGGTTTTAAGTCACCGGACTTATAAGTCAGGTGACTTA
TTGGAACCAAACAGGCCCATAATTACTCGTGGATAAGAAAATTCGAGCAGGTCGAT---CAGGTAGCTCTGCCACCTTCC
CAAGCTACATTAAGATCTCGCTGACGGGTCACGAGCATGAGACGTTGAGGCCAGC--TAGC--TCAGCACTAGCTGAACC
AAGTAACCGTTAGCTAATCGTAGCCATAGGAATGTTGAGAGATCTACGGCTTCCAGGTGATCCCTCTCGCCTTCTTAATT
ATGAATGTCACGAGCAGAGACGAGGCACCGACTCGTCCGCTCCACACGTATCGGCGGCGCTCCGTGAGCGGCGAGGTGGA
TGCATACGTACCCTATCCCTCGACGGTATAAAAAGCTCGCCCCCTCCTTCACATTGATATTCAACTCGCACTTGCAATCT
GTCAGAGTTCA-------CTAGCTGCTATACATCAGCTGC-TTGATAATCTGCCAGAGCTTTCCAC--TTAGTTTGCGGT
TGGTTTCTTGCATCAAGGGTAGCTTAGCTGCTTAGCTAGATCGATGGCGCCTAATGGTGACGCGGCGGTGGCGGCGGCGG
CGGAGGCGGTGCCGATGGGGCGGCCGAGGCAGCAGCCGAAGCCGCGGAGGATCTCGATGGAGGGGCTCCAGCGCGCCATG
TCCGACCTGGCCCTGGAGTTCACCAAGAAGGCGGCCGTGTTGGACGCGGCGGCCAAACTGCCGGCGGTGTCGGAGCAGGT
GGACGACGCGCGCTGCGAGTGCTGCGGCATGACGGAGGAGTGCTCGGCCGAGTACGTGCGGCGCGTGCGGGAGCGGTACT
GCGGGCGGTGGGTGTGCGGGCTGTGCGCGGCGGCGGTGACCGACGAGGCGGACAGGAGCCGGAGCACGACGGAGGAGGCG
CTGGCTGCGCACATCGCCGTGTGCGGGCGGTTCAACCGCCTGGGGCGCGCCAACCCGGTGCTCATGCAGACGGAGGCCAT
GAGGGAGATCTTCAGGAAGAGGGGCAAGTCCAACAGCCCCAGGGACAGCGCAAATGCCGGTGGCCTCACCAGGAGCTCCA
GCTGCATGTCTGCCATCACCAAGGACCTCA--------------------------------------------------
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>chr3D_462
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-------------------------------------------------ATTATGAT-----------------------
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--------------------------------------------------------------------TTTTCGCGTATC
ACAAACACTACTAGCTAGCTAGCT--------------------------------------------------------
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----------------------TGCCACTACTGCTAGTATATT-------------------------------------
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---------------------ATTACTCGTGGATAAGAAAATTCGAGCAGGTCGATGATGAGGTAG--CTGCCACCTTCC
CAAGCTGCATTAAGATCTCGCTCACGGGTCACGAGCATGAGACGTTGAGGCCCTGTAGCTCGATCAGCACTAGCTGAACC
AAGTAACCGTTAGCTAATCGTAGCCATATGAATGTTGAGAGATCTACAGCTTCCAAGTGATCTCTCTCGCCTTCTTAATT
ATGAATGTCACGAGCAGAGACTAGCTACCGACTCGTCCGCTCCACACGTATCGGCGCCGCTCCGTGAGCGGCGAGGTGGA
TGCATACGTACCCTATCCCTCGACGGTATATAAAGCTCGCCCCCTCCTTCACATTGATATTCAACTCACACTTGCAATCG
GTCAGAGTTCA-------CTAGCTGCTAGACGTCAGCTGC-TTGATAATCAGCCAGAGCTTTCCACAGTTAGTTTGCGGT
TGGTTTCTTGCATCAAGGGCA--------GCTTAGCTAGATCGATGGCGCCTAATGGTGACGCGGCGGTGGCGGCGGCGG
CGGAGGCGGTGCCGATGGGGCGGCCGAGGCAGCAGCCGAAGCCGCGGAGGATCTCGATGGAGGGGCTCCAGCGCGCCATG
TCCGACCTGGCCCTGGAGTTCACCAAGAAGGCGGCCGTGTTGGACGCGGCGGCCAGGCTGCCGGCGGTGTCGGAGCAGGT
GGACGACGCGCGCTGCGAGTGCTGCGGCATGACGGAGGAGTGCTCGGCCGAGTACGTGCGGCGCGTGCGGGAGCGGTACT
GCGGGCAGTGGGTGTGCGGGCTGTGCGCGGCGGCGGTGACCGACGAGGCGGACAGGAGCCGGAGCACGACGGAGGAGGCG
CTGGCCGCGCACATCGCCGTGTGCGGGCGGTTCAACCGCCTGGGGCGCGCCAACCCGGTGCTCATGCAGACGGAGGCCAT
GAGGGAGATCTTCAGAAAGAGGGGCAAGTCCAACAGCCCCAGGGACAGCGCGCGTGCCGGTGGCCTCTCCAGGAGTTCCA
GCTGCATGTCTGCCATCACCAAGGACCTCAACTGTGCCATGAAAAAATAGTCAAAGGAGTATCCGACCTCCTTTTCGCCT
GGCTGTGTGCAGGCCAACGCAAGAGGATCGTGAAAGCTACGTATATCTCATAAAGCTATGTATGTACATACAGCTCAAGC
TCAGTGTGGAATCATCAGTGCTATATGCTGCATGATATTAGTA--TAAGTTTTAGTTAAACAAAGAAGAAGAAAAA----
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>SNPs
SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS----------------S------S----------SSSSS---S---S---------S----
---S--------------------------------S---S--SSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------
S-------------------------------------------------------------------------------
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--------------------------S-----------------------------------------------------
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----------------------------------------------------S---------------------------
--------------------S-----------------------------------------------------------
-------------------------------------------S------------------------------------
-----------------------------------S--S-------------S---------------------------
-----S---------S-----------------------S-S--------S--------------------------S--
S----------SSSSSSS----------------------S-----------------------------------S---
---S----------S---------SSSSS---------------------------------------------------
------------------------------------S-------------------------------------------
-----------------S---------------------S----------------------------------------
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-------S--------------S--------------------------------------------S------------
--------------------------------------S-----------------------------------------
------------------------------------S---------S--------------------S------------
----------S------------------------S----S------------S------S------S--S---S--S--
-----S-----------------------------S--------------------------------------------
--------------------S---------S--------S-S-SS----S-----S-----------S--------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_254
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--------------------------------------------------------------------------TCTGAT
TGTGTTGTCGCGGA------------------------------------------------------------------
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>reverse_2214
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-----------------------------------------------------GGGAGTGTCCGACGTCTTTT-------
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