>input_sequence_75803
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-------------------------------------------------------------------------------A
TGGGGAACTTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGGCGCCAGAGTCGTGCTCCCCGACGGCGGG
CTCAGGCTCGTCAGGCCCCCGGCCACGGCGGCGGAGCTCATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGCGCGC
GCTGCAGGCGGGCCGCCGGATCGAGGCGCTCGCGGCTGACGAAGACCTCGAGCTCGGCGGCGTCTACGCCGCCTTCCCCA
TGAAGCGGCTCGGCTCCAAGGCCGCGCCCGCCGACGTGGCACGCCTGGCCGCCGTTTTCGCCAGGGAGGCTCATGGCCGG
AGGCCTGCCTCGGCCAAGGTGGCGGCCATCGTCGTGGCGCCGCCCGAGGCGGCTTCCGTTGCCGCCGAGGCGGACCTCGC
GCCGGTCAGGGCGCCGCGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAAC
GGATTAGCGGCGGCCGCTTGTCGAGGCGGCGGCCGACGTTGGAGACCATACACGAGGAGAGCTACGCCGCGCTAGCATGC
TAA-----------------------------------------------------------------------------
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-----------------------------------------------
>chr3A_1_TraesCS3A01G264500
CCACATTTTAAAAAAAAAGGGTTTCTTGTATATTTGCGCGGGGCAATTATCATGTCGATGATTTGTCTTCCTTTTTTTTC
ATCTGTCGAAAAGGCATTTGATACCTTTTTTTATGCCAACTGCAATATACATGCCTTCTCCAATAGGCACGTAGGTAGGC
AGCTTGCAAGATTCAAGCCAGTGTTCCAGAAATCCAGCCAAAAGTCGAGATACTTCCAATCAAACTGTGGAG-ACGCTGC
CGGTCGATGGACCAGACCGTGCCTTGTGGCTTGTCTTTCCAACCAAAAGTCGTGACCACCCTGTCGATCTCAAAGT----
----GGACACGAATAGAAGAAGTCCGATCACCGATCAGTCGATCACACCGCCAGGCGCCTGATCATCTTGTACAGCAGGC
GCAGCCACGCGGGATGTACTAGGTTTCTTTCTAACTGGTCAGCGAGTGGATTTTCGAGAGTTGGTCGTAACATGTCACTC
GTCAGCAAGTGGATTTTTGCTAGCTGGTCGTGATCGTAATATGTAACTGATCAACAAGTGGATTTCACGCGGGATAACGT
GGGCGAT--------TATCCAGGATTATCACTGATCAACAAGTGGATTTTACAGGAG-------TAGGTTTCTTTCTCGT
CCCTCGCCGGCGAGGCGAGGGAGGGTGGGAGCCCAACCGAAGCCGAGCCAACGAAC--------TCCCGTG----GC---
---CCGTGGTCGGTCGGCCCCACGCGCAAATCCTCTTGGACGACGACGCCAACCCACCTGGCCACCACCACCCCACTCCT
CACTCAGCTCACCTTTCGTCTCTTCCTCCGGCTCCTCGCACCCACCCACCCAC------CACGCCACCGTCGTCACCCAC
ATCCATCGTCCATCGCACGCGTTTGCTCGCGCCACTGCTATATATCTCCCCGCGCAACCCGTCCCAGGCAGCGCAGCCAC
ACATACCCACACCAACTCTCATTCCTCGCACTCTGTCTTCAACCTCATCGCCTTTATCCATCCTATCTCCGGCCTCTCTC
TC------------------------------------------------------------------------------
-------------------------------------------------------------------------TTCGGCA
TGGGGAACTTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGGCGCCAGAGTCGTGCTCCCCGACGGCGGG
CTCAGGCTCGTCAGGCCCCCGGCCACGGCGGCGGAGCTCATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGCGCGC
GCTGCAGGCGGGCCGCCGGATCGAGGCGCTCGCGGCTGACGAAGACCTCGAGCTCGGCGGCGTCTACGCCGCCTTCCCCA
TGAAGCGGCTCGGCTCCAAGGCCGCGCCCGCCGACGTGGCACGCCTGGCCGCCGTTTTCGCCAGGGAGGCTCATGGCCGG
AGGCCTGCCTCGGCCAAGGTGGCGGCCATCGTCGTGGCGCCGCCCGAGGCGGCTTCCGTTGCCGCCGAGGCGGACCTCGC
GCCGGTCAGGGCGCCGCGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAAC
GGATTAGCGGCGGCCGCTTGTCGAGGCGGCGGCCGACGTTGGAGACCATACACGAGGAGAGCTACGCCGCGCTAGCATGC
TAATGCTACAAGTCAAGTGGCCATCTAACAGAC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CGAGAGATGGCAAAGGCCTTCTCTCGTATTCTTTTTTCCCCTTTTTTTGACC
ATGTGT-AAATTTGCT----------------------------------------------------------------
------------------------------------------------------------------GCCTC-TTTTTCAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GTATTTTTGAGCGATGAA
AAGGCAATTGAACCCAAAAA-TA---TGGTGGACAAGTGATTAATGAATCAAGGAGATTCATCATT---TTTTTGTCAAT
GAGTCATGGAGATCGAGCAATTCTCACTTACCCATGGGCAACACTAGTACTCCTTTTATAATTCTATTTCTGCTTTTGCT
TTCTTAATATCAACTTCAAAATT-CCTTTTGTTATAACTCAACAACGACAAACGATCTTTTT----CTTTCTTTCTTTGC
CGAAAGGATTCATACGTGTATATACAACGGCGGAGCTGCCTCCCGGTGAACCTGGGCAGCCCAGCCAACAACTTTCATTG
GAATGT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------TAATAGAACTTGATGATTTCGTTGGTGATTTCCA
TG-GCAAATGCTTATATAGTTCTATGCATATTTCTTTCATGTTCTTTTGAAAGAACAAA--TTATGTATTTCTCTATCCT
CTTTTCAAAGAGGGCATTTAGTTATTGCATGTTTCTTTTTGTAAGACAATAAGTTTTGGGGGAACCAGCACAACCCTCTA
GGGGTGGCTTATCTCATTATATATAATGGATGTGTTACAATACGTACAATATACGTATATAAGTACAGAAGCTATACATA
GTCTAACACCCTCCCTCAATCTTAGCCACTTTCTAAAGAACTGAGAAGGGTAAGATTGCGCCTACAAGCCTCAAACTGTG
GCAGAGGTAAAGGCTTAGTGAAGATGTCTGCAAGTTGATCCTTAGATGAGATAAACTTGATCTGGAGTTGCTTCTGTGAT
ACACGTTCCCGTACAAAGTGATAGTCAACTTCAATGTGTTTCGTTCGGGCATGAAATACTGGATTTGCAGAAAGGTATGT
AGCACCGATGTTATCACACCAAAGAATAGGAGGCTGTGGTTGAGACA
>chr3B_179
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CAGTGTTCCAGAAATCCAGCCAAAAGCCGAGACCTTTGCAATCAAACTGGGGGAAACGCTGC
CGCTCGATGGACCAGACCGTGCCTTGTGGCTTGTCTTTCCAACCAAAAGTCGGAACCACCCTGTCGATCTCAAAGTCGAG
CGGAGGACACGAACACAAGACGTCCGATCACTGATCA---------------------CTGATCATCTTTTCTTGTAGCA
GTACGAGTGGATTTCC----------------AACTGATCAGCGAGTGAATTTTGGCTTGTTGGTCGTAACATGTCACTC
GTCAACAAGTGGATTTTTGCTAGCTGGTCGTGATCGTAATATGTAACTGATCAACAAGTGGATTTCACGCGCGACCGCGC
GGGATGATAGAGTACTATCCAAGATCATCACAGATTAACAAGTGGATTTTGCAGGGTAATGGTGCAGGTTTCTTTCTCGT
CCGCAGCCCGTCCACACCG-----------GCCGAACCGAAGCCGAACGAACGAACGAACTCACTCCCGTCCAGTGCCCG
TGGCCGTGGTCGGTCGGCCCCACGCGCAAATCCAGTCGGACGACGACGCCAGCCCACCTGGCCACCACCACCCCACTCCT
CACTCAGCTCACCTTTCGTCTCTTCCTCTCGCTGTTCG--------CACCCAC------CACGCCACCGTCGTCGC----
ATCCC----CCATCGCACGCGTTTGCTCACGCCACCGCTATAT-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATCTCCCGCGCAACCCATCCCAGGCAGCGCAGCCACACGCAAGTC
ATCAC------CAACTCTCATTCCTTCATT----------CCTTTATCC----TATCCTATCCCCGACCTCTCTCCGGCA
TGGGGAACTTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGGCGCCAGGGTCGTGCTCCCCGACGGCGGG
CTCAGGCTGGTCAGGCCCCCGGCGACGGCGGCCGAGCTCATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGCGCGC
GCTGCAGGCCGGGCGCCGGATCGAGGCGCTCGCGGCTGACGAGGACCTCGAGCTCCGGGGCGTCTACGCCGCCTTCCCCA
TGAAGCGGCTCGGCTCCAAGGCCGCGCCCACGGACTTGGCGCGCCTGGCCGCCGTTTTCGCGAGGGAAGCTCATGGGCGG
AGACCCGCTTCGGCCAAGGTGGCGGCCATCGTCGTGGCGCCGCCCGAGGTGGCTTCCGTTGCCGCCGAGGCGGACCTCGC
GCCGGTGGCGACC---CGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAAC
GGATTAGCGGCGGTCGCTTGTCGAGGCGGCGACCGACGTTGGAGACCATACACGAGGAGAGCTACGCCGCACTGGCATGC
TAAAGCTACAAGTCAAGTGGCCATCTAACAAAC-----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------CGAGAGATGGCAAAGGCTTTCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTTTTGAGCGATGAA
AGGGCAATTGAACCCAAAAA-TATGGTGGTGGACAAGTGATTAATGAATCAAGGAAATCCATCATTTTATTATTATCAAT
GAGTCAAGGAGATCGAGCAATTCTCACTTACCCATGGGCAACACTAGTA---------TAATTCTGTTTCTGCTTTTGTT
TTCTTAATAGCAATTTCAAAATTCCCTTTTGTTATAATTCAACAACGACAAACGATCTTTTTTTTTCTTTCTTTCTTTGT
TGAAAGGATTCATAC--GTATATACAACGGCTGAGCTGCCACCCGGTGAACCTGGGCAGCCCAGCCAACAACTTTTATTG
G-------------------------------------------------------------------------------
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-----------------------------------------------
>chr3D_421
--------------------------------------------------------------------------------
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-----------------------------TCTAACTGATCAGCGAGTGGATTTTCGCTAGTTGGTCGTAATATGTCACTC
ATCAGCAAGTGGGTTTTTGCTAGCTGGTCGTGATCGTAATATGTAACTGATCAACAAGTGGATTTCACGCGGGATAACGT
GGGCGAT--------TATCCAGGATTATCACTGATCAACAAGTGGATTTTACAGGGTAATGGCATAGGTTTCTTTCTCGT
CCCCCACCGGCGAGG-----GAGGGAGGGAGCCCAACCGAAGCCGAACGAACGAAC--------TCCCGTCCAGTGC---
---CCGTGGTCGGTCGGGCCCACGCGCAAATCCTCCTGGACGACGACGCCAACCCACCTGGCCACCACCACCCCACTCCT
CACTCAGCTCACCTTTCGTCCGTTCCTCTCGCTCCTCG--------CACCCACCCACCACACGCCACCGTCGTCAC----
ATCCATCGTCCATCGCACGCGTTTCCTCCAG-------TATAT-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATCTCCCGCGCAACGCATCCCAGGCAGCGCAGCCACACACACACA
--CAC------CAACTCTCATTCCTCGCACTCTGTCTTCAAGCTTATCGCCTTTATCCTATCTCCGGCCTCTCTTCGGCA
TGGGGAACTTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGGCGCCAGGGTCGTGCTCCCCGACGGCGGG
CTCAGGCTGGTCAGGCCCCCGGCGACGGCGGCGGAGCTCATGCTCGAGGCGCCGGGCCATTTCCTGACCGACGCGCGCGC
GCTGCAGGCCGGGCGCCGGATCGAGGCGCTCGCGGCTGACGACGACCTCGAGCTCGGGGGCGTCTACGCCGCCTTCCCCA
TGAAGCGGCTCGGCTCCAAGGCCGCGCCCGCCGACGTGGCGCGCCTGGCCGCCGTTTTCGCCAGGGAGGCTCACGCCCGG
AGGCCAGCCTCGGCCAAGGTGGCGGCCATCGTCGTGGCGCCGCCCGAGGCGGCTTCCGTTGCCGCCGAGG----------
--CGGTCAGGGCGCCGCGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAAC
GGATAAGCGGCGGTCGCTTGTCGAGGCGGCGACCGACGTTGGAGACCATACAGGAGGAGAGCTACGCCGCACAAGCATGC
TAATGCTACAAGTCAAGTGGCCATCTAACAAAC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CGAGAGATGGCAAAGGCCTTCTCTCGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTC-TTTTTCAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GTATTTTTGAGCGATGAA
AGGGCAATTGAACCCAAAAAATA---TGGTGGGCAAGTGATTAATGAATCAAGGAGATCCATCATT---TTTTTATCAGT
GAGTCAAGGAGATCGAGCAATTCTCACTTACCCATGGGCGACACTAGTA---------TAATTCCATTTCTGCTTTTGTT
TTCTTAATATAAACTTCAAATTTCC--TTTGTTATAACTCAACAACGACGAGCGATCTTTTTTTTTTTCTATTTCTTTGT
CGAAAGGATTCATAC--ATATATAGAAAGCCGGAGCTGCCTCCGGTTGAACCTGGGCAGCCCAGCCAACAACTTTCATTG
GAATGTTAAGAGCAACTTCAACACAGTGACCCAAACGGATATGGATTTTGTCCGCATTTTATCCGTTTCGGTCGGCCGTC
CGCCTAGCGGAGGCGGACAGGGGCTGCCCGTGGATGAAACCAACGCACAAGACAAAAAAGCGGACACGCAAGGTTGTCGG
CGTGGAGATGCAACTTTCCTCCCGCCCCGCCACGGCCGCGGCTCGTGCCGCAGCTCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCACGAGCTTGCCACCCCGCTCCCGCCCCG
AGCTCGCCGCCTCGCTCGCCATGCAGCCCCGAGCCCGCCGCCCCACTCGCCGCGCTCGGGCCTCCCTCCCTGAGCTCGCC
ACGCCCAGCCAATGAACTGCTGCTGCTGTGGCCGCGGGCGATGCGGGAGGTCGCCTTCGAAGTCGAGGACGCCGTCGACG
AGGCTTAGAACGGGAGGCGGCGGCCAGCGCCGGTGGCCTCGCTGGTTCGCGGCGGCGGCCTGCGCAGGTGGCCTCGTCGG
CGAGTGTGGCGGCGGCCTGTGCATGTGGTCTTGCCGGTGCATCGGTATTCGCTCGTACGCGGTCGCTGATATTTGGGTCT
AGGGCGGACACGAGCGGGCGACAGGAGCATCCGCTTTTATCCATCGCGGACCCATTTGTGACTCAAATTTGGGCTCAATT
TGGATCAAGATGGACAACAAATGGACAACAGGCAGACGCTATGTCCGTTTGGACCGCCCCGTTGGACCATCTTTTTTGTC
CGGATAACCCAAACAGACAAAATGGATTTCTGGATTGAAGTTGCTCTAATAGAACTTGACGATTTCGTTGGTGATTTCCA
TGGGCAAATGCGTATGTAGTTCCATGCGTATTTCTTTCATGTTCTTTTGAAAGAACAAAAGTTATGTATTTCTCCATCAT
CTTTTCAAAGAGGACATTTAGTTATTGCATATTTCTTTTT----------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr3A_848
--------------------------------------------------------------------------------
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---------------CACGCGTTTCCTCCGGCTAGC---ATAT-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATCCCCCGCGCAACCGATCCCACGCAGCGCAGCCACACACGCCG-
---AACCATCACAGCTCTCATTCCTTGCACTCTGTCTTCGCCTTTACCC----TATCTCTGA------CTCTCTTCGGCA
TGGGGAACTTGGCGTCCTGCATGCTGGCCATGATCCCCGGGGCGGCCAAGGACGTCAGGATCGTGCTCCCCGGTGGCGGG
CTGTGGCTGGTCAGGCCCCCGGCGACGGCGGCTGAGCTGATGCTCGAGGCGCCGGGCCATTTTCTGGCCGACGCGCGCGC
GCTGCAGGCGGGGCGCCGGATCGAGGCGCTTGCGGCTGATGAGGACCTCGAGCTCGGGAGAGTCTACGCCGCCTTCCCCA
TGAAGCGGCTTGGCTCCAAGGCCGTGCCCGCCGACG------------------TTTTCGCCAGCGAGGCTCATGCCCGG
AGGCCCGCTTCGGCCAAGGTGGCGGACATCGTCGTGGCGCCGCCCGGGGTGGCTTCCGTTGCCGCCGAGGCGGACGTCGG
GCCGGTCAGGACGCCGCGGTTGGATGAGATGGCCGTGGACAACGAAGCGGCTGGGGCAGAGACCGAAGAGCTCAATCAAC
GGATACGTGGCGGTCGCTTGTCGAGGCGGCGGCCCACGTTGGAGACTATACACGAGGAGAGCTACGCCGCACTACCATGC
TAATGCTACAACTCAACTGGCCACTTG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------ACAAACTGAGAGATGGCAAAGGCCTTCTCTCGTATT-----TTCCTTTATTTTTGATC
GCGTGTAAAATTTGCC----------------------------------------------------------------
------------------------------------------------------------------GCCTCTTTGTTCAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GTATTTTTGAGGGATGAA
AGGGCAATTGAGCACAAAAAA------GGTGGACACATGATTAATGAATCAAGGAGAGCCTACAATTTC--TTAATCAAC
GAGTCAAGGAGATCGAGCAATTCTCACCTACC------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr3D_871
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------TATAT-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATCTCCCGCGCAACCGATTCCACGCAGCGCACGCACACACGCCGA
ACCAACCATCACAACTCTCATTCCTTGCACTCTGTCTTCGCCTTTATCC----TATCTCTGG------CTCTCTTCGGCA
TGGGGAACTTCGCGTCCTGCACGCTGGCCAGGATCCCCGGGGCGGCCAAGGACGTCAGGATCGTGCTCCCCGATGGCGGG
CTGAGGCTGGTCAGGCCCCCGGCGACGGCGGCGGAGCTGATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGAGCGC
GCTGCAGGCGGGGCGCCGGATCGAGGCGCTTGCGGCTGACGAGGAACTCGAGCTCGGGGGAGTCTACGCCGCCTTCCCCA
TGAAGCGGCTCGGCTCCAAGGCCGCGCCCGCCGACGTGGCGCGCCTGGCTGCCGTTTTCGCCAGGGAAGCTCACGTCCGG
AGGCCTGCCTCGGCCAAGGTAGCGGCCATCGTCGTGGCGCCGCCTGAGGTGGCTTCCGTTGCCGCCGAGGCGGACCTCGC
GCCGGTCAGGGCGCCGCGGTTGGATGAGATGGCCGTGGACGACGAGGCGGCTGCGGCGGAGATCGGGGAGCTCAAGCAAC
AGATTAGCGGCAGTCGCCTGTCGAGGCGGCGACCGACGTTGGAGACCATACAGGAGGAGAGCTACGCCGCACTAGCATGC
TAATGCTACAAGTCAAGTGGCCATCTAACAAACGGTTAACATTTGAGAAAGCATAGGCTTTCCTACACCCCCTTATCTAG
CCACTTATTTTTTCATCGCGATTCGTGCGAGTATATTTGTCTTTTTTGTTTCTCCCATATAGAACAACATATGAACTTCA
AACTTGGCAGCTCAACAAAACATTCTTATTAGAATGTGGGAAAAAAACTTTTAGAATTTTTTGTGCAATATAAATACTAA
AAAGTACATTTTTTAATAAAAAAAATCTAATTTCGTATATTTATGTTTAACGAAACAATCTGAAAGTTTTTTCTCACATT
CTAGTTAGAACGTTTTGGTGTCTTGCAAAGTTTGAAGTTCATATGTTGTTTTATTTTGAAGAAACAAAAAAGAGAAAATC
TAATGTACAAAGTTGGTTGTCTAGCACAAATCTTAAAGCAATGTTGGAGGGTAAGGATAAGGAGTGTCCAGAAACCTGAG
CTGTAAAAATCCGCGTCCTCTAACAAACCGAGAGATGGCAAAGGCCTTCTCTCGTATTCTTTTAT-CCCCTTTTTTAACC
ACGTGT-AAATTTGCT----------------------------------------------------------------
------------------------------------------------------------------GCCTCCCTTTTTAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GTATTTTTGAGCGATGGA
AGGGCCATTGAACCCAAAAAATA---TGATGGACAATTGATTAATGAATCAAGGAGATCCAACATTTTC-TTTTATCAAT
GAGTCAAGGAGATCGAGCATTTCTCA------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr3D_871
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TATAT-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATCTCCCGCGCAACTGATCCCACGCAGCGCAGCCACACACGCTG-
---AACCATCACAACTCTCATTCCTTGCACTCTGGCTTCGCCTTTATCC----TTTCTCTGA------CTCTCTTCGGCA
TGGGGAACTTGGCGTCCTGCACGCTGGCCATGATCCCCAGGGCGGCCAAGGACGTCAGGATCGTGCTCCCCGATGGCGGG
CTGAGGCTGGTCAGGCCCCCGGCGACGGCGGCGGAGCTGATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGCGCAC
GCTGCAGGCGGGGCGCCGGATCGAGGCGCTTGCGGCTGACGAGGACCTCGAGCTCGGGGGAGTCTACGCCGCATTCCCCA
TGAAGCGGCTTGGCTCCAAGGCCGTGCCCGCCGACG------------------TTTTCGCCAGCGAGGCTCATGCCCGG
AGGCCCGCTTCGGCCAAGGTGGCGGACATCGTCGTGGCGCCTACAGGGGTGGCTTCCGTTGCCGCCGAGGAGGACATCCC
ACCGGTCAGGACGCCGCGGTTGGATGAGATGGCCGTGGACAACGAGGCGGTTGCGGCAGAGATCGAAGAGCTCAATCAAC
GGATAAGCGGCGGTCGCTTGTCGAGGCGGCGGCCCACGTTGGAGACTATACACGAAGAGA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TGGCAAAGGCCTTCTCTCGTATT-----TTCCGTTATTTTTGATC
ATGTGTAAAATTTGCC----------------------------------------------------------------
------------------------------------------------------------------GCCTCCTTTTTCAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GTATTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr3B_990
CTCTCTTCGGCATGGGGAACTTCGCGTCCTGCACGCTGGCCATGATCCCTGGGGCGGCCAAGGACGTCAGGATTGTGCGA
AAATATTGTACGGAGCCATGGTGCAGTCGAACCCATGCTCAACACCGTACATCCTCTCACACCATCTATTGGGATTTGTG
TCCGGCGCGCATCAAAACTCATGGCGGGAGTCATTAACTGATGTTTAATAGACTACTAGCATTGCTAATAAAGCCCACTG
TTTGCTGATCCCCCTAGGCATTAAATTATTAACCTTGAATTGGTACATACAATACGTCTTCAATCTCCATGTTGACTAGG
TCAGCTCACTATTTCTTATTCGCATTGTTATGTGTGATTGTAACAATCCCACTCACGAAAAATATGTGTTTAGTGCTCTG
ACTTTGTTCTTTTCCTCCTTTTTTCTTTTTTGCAGAAAATTTTGTTCTTCATTTCACTCTGTGTAAAGTGATTTTCTTGG
TGTCTTACTGTTTTTTGTGTCACCTCAGACGAATATGTGTCAGTTAACTGACAAAATTCAGTATTTTGTTCTGACAAAAC
GTGAACGCATATTTTTCTAACAAAACTAAGCCTTTTGTTTTGGCAAAATCAGAGGATAAGCACAAGAGACAATATGTTTG
CTATGTTCATCAATTTGTACAGGAGAATATGAAGAGTGCTGAACATATATATTTTTTATTCTCAAAGTTTGTCTAGTGTG
CTACAGTACTTGGGAGCGCGTGCCAACACATGCAGATTAAAGAAAGGTGAGCACTGCTGCAGGTCTACAAGTTAAATGAT
CAGTATATGATTAGCACAAACAATAAAATTTGAATCCTAACATGGCCCGTATCCTCATGGAAGTACTGCTACATCCAACG
GCGCTGAGCATGGCCTGATGCGGATCAAACGGTTACAAAATCGTGCACGCCTGTTGCAATATTCCGTCCGTCTGGATTTT
AGCTTTTACCTTTATTTAATTACTATTTTTTTCATATAAAGTGCATATACACACATGTACCAAACATCCGCGTTTCAGAA
TGCTCCTATTATATCACGCGTTTCCTCCTGTGTATATCTCCTGCGCAACCGATCCCACGCAGCGCACGCACACACGCCG-
---AACCATCACAACTCTCGTTCCTTGCACTCTGGCTTCGCCTTTATCC----TTTCTCTGA------CTCTCTTCGGCA
TGGGGAACTTCGTGTCCTGCACCATGGCCATGATCCCCGGGGCGGCCAAGGACGTCAGGATTGTGCTCCCCGATGGCGGG
CTGAGGCTGGTCAGGCCCCCGGCGACGGCGGCGGAGCTGATGCTCGAGGCGCCGGGCCATTTCCTGGCCGACGCGCGCGC
GCTGCAGGCGGGGCGCCGGATCGTGGCGCTTGCAGCTGACGAGGACCTCGAGCTCGGGGGAGTCTACGCCGCCTTCCCCA
TGAAGCGGCTTGGCTCCAAGGCCGTGCCCGCCGACG------------------TTTTCGCCAGCGAGGCTCATGCCCGG
AGGCCCGCTTCGGCCAAGGTGTCGGACATCGTCGTGGCGTCGCCAGGGGTGGCTTCCGTTGCCACCGAGGAGGTCATCCC
ACCGGTCAGGACGCCGCGGTTGGATGAGATGGCCGCGGACAACGAGGCGGCTGCGGCAGAGATCGGAGAGCTCAATCAAC
GGATAAGCGGCGGTCGCTTGTCGAGGCGGCGGCCCACGTTGGAGACTATACACGAGGAAAGCTACGCCGCACTAGCATGC
TAATGCTACAAGTCAATTAGCCTCT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>SNPs
-SSSS--SSSS-SSSSS-SSS-SS-S-SSSSSSSSSS-SSSSSS-SSSS-SSS-SS-SSS-SSSSSSSSSSS--S-SSSS
-SS-S-S-S-SS-SSSSS--S-S-SS-SSSSSSSSSSSS-SS--SSS-----S-SS--S-SSSSSSSSSS-SSSS-S-SS
SS-SSSSSSS--SS--S---------------------------------S----------------S---S--------
--S--------------------------------------------------S--------------------------
---------------S----S----------S-----S-SS-S--SS--SS-SSS--S-----------S--SS----SS
---SSSSS-SSSSSSSSSS-SSS-S-S----------S------------------SS----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
---------------S-S-S-----S--------------------S-S-------------------------------
--------------------------------------------------------------------------------
----------------------------SS--------S--SSSS-------------------------------SSSS
----------------------------S------S-------SS-S-S--SSSSSSSSSS-S--SSS-SS-SSSSSSSS
-SS-SSSSS-SSS-SS-SSSSSSSS-SSSSS--SSSSSSSSSS-SS--SSS-SSSSSSSSSSSSSSSS-SS-SS--SSSS
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------S--------------S--------------------------------------------------------
------------S-----------------------------S--------------S----------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S--------------------------------------------------------S---------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S--------------------------------------------------------S---------------S-----
------S------------------------------------------SSSSSSSSS--------------------S-
-------------------------------------------------------------------------------S
---------------SS---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
-----------S---S------S----S----------------------------------------------S---S-
-------------S----------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_44
------------------------CTTGTATATTTGCGCGGGGC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>reverse_1791
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------GACCGAGAGATGGCAAAGGC------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------
