>input_sequence_75782
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-ATGGCGTCGGCGCCGGGGCAGTGGGCGTGGATGGCCGCGGTTGCGGCGGAGGAGCTGGCGAAGCTGGAGGCCGCACACC
CGGGCCGCCTCGGCCCGCTCAAGGACGAGCTCAGGCGCCTCGTCGCCGAGCCCGGCTGGGACGACGACGACGCGTTCGCG
CTCGCCTGCCTGGACGGCGGCGCCCCCGCCGGCTGCTCCTCCCCCTCCTCCTCCTCTCCGCCTTCTGCGCCGGCGGACCT
TATGTTCACGCAAGGTACGTATACCGTGCGTCTGCGCGTTCTCTGCGTGCCATCCTCCCCTGATAATAATCCTGCGCGAG
CGTCCGCGGTCACCATTAATGGCGGTCCTGCATTGCATGCGCCACCTGCAGAGTCCTCGACCAACAAGAGGAAGTGGTGC
GGCGGCGGCGGCGGCGCGGTCGGCCGCGAGCAGGGGAAGCGCCGGAGGAAGAATGCGGCTTCCGGGGTGAAGGACCGGGC
GGACATGGCCATCGACCGCGCCAAGAAGTGCCTGAAGAAGATACGCGCCATCAAGCGGAGCTTACTTGCCTGTGTCACGG
ATTGA---------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G158900
TGTGCCCTGGATGTCATGAACCCATTAGTGAAGATGCAAACCCTTACGAATTGTGGGGGCCTTCCAATGACGGGGCGAAA
CGAGGGCAAGAACTAAGGGAGCAA-CTTCGAGATGGCTTTCCCGACGATCGATGATCATTACGGAATACCAAGAGTTGTC
GTTGCAAGTAGTCCAAAATAGGAAATAGTCAAAAGTTTAAGCAACTCACTGTGCAGCACTGAATTACTCCGTAGATATTG
TTGGTCTCTTTTTCCTAGCAATGGCGTTAGATTTAGAAAAATCAATGTTTTTCCTTTCTAAAGCAAGGAATGCAATGCAA
GCAAAGATAAATCAATTTATGACGGGACTCGCAAAATTACGTAGT---TGGATGTAAACGCATGTTATATTTTTCAGCAA
TATTCC----------------TCAGCAATAGAGAAAAACATATTATTTCCAATCCTAGAAACGAATTCAATTTTCTTTT
CTAGAAATTGAATCCTTAG-AATTCTGTTAAATTACTTTGAACCGAACATGTACCTTTATACAATTAGCAATATTACAAT
GAAAGGTCCAT---------------------------------------------------------------------
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---------------TAACGCTCTTCAAGTCTTTATTTATAGCATTGGTG-------CGTTTTTTTTGCCACCCATCCCG
GACCGCAACGGGGTCAGCGAGACGTGCAGACGTGCTAC----CTCTGCCCTCA--TGGGCCCATTGAAGTCCGCGGGTAG
AGCAGCTACAGTAGCGGGCGGTCTCCGTTTCCCAGAACTCGCGCAGGTACAAAACACGAAGCCAGGAAAGAACCAACGGG
CAGGACCAGGACTCGAAAAGCCGCTGGAACCGAGGAGACAGAGC---AGGGCAGGGCAGGGATTGCTGTGCCGTGTTAAC
TTGCAGCGGCGCGCCTGCAGCGCGCGCGCGCGTCCGCGCCAATCAAACCTCGGTCAAATTCGCCTCCCCGCCCCTAGCCG
CGCGTCGCGTCGCGTCCAGTCTCTGCCTCTCGTCCGCTGCCGCGCTTTGTATTCGCTTTGAGAGCTTGGACGCGGCCGGC
GATGGCGTCGGCGCCGGGGCAGTGGGCGTGGATGGCCGCGGTTGCGGCGGAGGAGCTGGCGAAGCTGGAGGCCGCACACC
CGGGCCGCCTCGGCCCGCTCAAGGACGAGCTCAGGCGCCTCGTCGCCGAGCCCGGCTGGGACGACGACGACGCGTTCGCG
CTCGCCTGCCTGGACGGCGGCGCCCCCGCCGGCTGCTCCTCCCCCTCCTCCTCCTCTCCGCCTTCTGCGCCGGCGGACCT
TATGTTCACGCAAGGTACGTATACCGTGCGTCTGCGCGTTCTCTGCGTGCCATCCTCCCCTGATAATAATCCTGCGCGAG
CGTCCGCGGTCACCATTAATGGCGGTCCTGCATTGCATGCGCCACCTGCAGAGTCCTCGACCAACAAGAGGAAGTGGTGC
GGCGGCGGCGGCGGCGCGGTCGGCCGCGAGCAGGGGAAGCGCCGGAGGAAGAATGCGGCTTCCGGGGTGAAGGACCGGGC
GGACATGGCCATCGACCGCGCCAAGAAGTGCCTGAAGAAGATACGCGCCATCAAGCGGAGCTTACTTGCCTGTGTCACGG
ATTGAAACCAAGGAGGGAAAATCGTGCTAGCGGCTACAAGGAAGGAGAAATGGATATGGAAGTACCGGAGATGATGGGTG
GAAAACCAGGAAATGGAATTGGCCTTTATCGATTGCCTTTTGGCTTGTACTATATTGTTTGCCTTTTTGCGATTGGAAAG
TGGCACCATTTCGTTGATGCGGTAGTTTAGCTTTCCCAAAAGGAAACAAAATGCTAAGTACTTTGAATTATTGCAGGAAA
TCATCTAACGCAATGTTTAGAGCACTGGATTTTATTTCTCTCATGAAGTCGGGAACTGAACTCCTAACAGTAGCCGGTCT
CATCAAAAGCAGCCAAACATCGGGGTTTCTCCAGCAACACAGCATATATACTCCCTCAGTCCACGAATAAGTATGTACAT
ATAGAAATTATAAAACAGACTATGAAGTGAAGTAGAAAATACATTAGGAAGGTACAAGTCACCATCTCTCTTCTTTTTAA
TTCCCCACTCCCAATAAGCTACTACCTCCGACTTGATTTATTAGTCTCCATTGTAGTTTGAGTCAGAGTTTGACCACATA
TTTGATTAGCAAAATGTGAATACAAATGTCACAAAAATTATATTGTTGGATTCATACTTGAATGTAATTTTCAGTGATAA
TATTTTTGCTACATATATCTTATATTTTATTAGTTAAAATCATGATCAAAATATGACCCAAAATACGAAGGGGCTAATAA
ATCAGGACGGAGGTAGTAAGTGCATATGGAAAGTGAAGAGACCATGGGTTGAACATTACTATTCGCAAAAAAAATGTGTT
GAACGTTATTGGTCTTGATTACCGTGTGATGAGAGAGAAGAATTTTAGTTCTAGTTTAAAATGCATTAGGAAGATAGAAG
TACACTATTTTATGGACAAAATTTAAGTGTCAAACATACACTTACTCGTGAACGGAGAGAGTATATAGGGAGGCCTTGAT
GCGCTCGGGCAACATAGCCATGACGGGTCGGCTCATTATGACCCA
>chr1B_1
TGTCCCCTGGATGTCATGAACCCATTAGTGAAGATGCAAACCCTTACAAATTGTGGGGGCCTTCCAATGACGGGACGAAA
CGAGGGCAAGGACTAAGCGAGCATCCTTCAAGATGGCTTTCTCGACGGTCGATGATCATTATGGAATACCAAGAGTTGTC
GTCGCAAGTAGTCCAAAACAAGAAATAGTCAAAAGTTTAAGGAACTCACTCTTCAGCACTGAATTACTCCGTAGATATTG
CTGGTCTCTTTTTCCTAGCTAAGGCGTTAGATTTAGAAAAATCAATGATTTTCCTTCCTAAAGCAAGGAATGCAATGCAA
GCAAAGACAAATCAATTTATGACGGGACTCGCAAAATTACGTAGTAGTTGGATGTAAAAGCATGTTATATTTTTCAGCAA
TATTCTTAAGGACATATATTCTTCAGCAATAGAGAAAATCATATTATTTCCAATCCTAGAAACGAATTCAATTTTCTTTT
CTAGAAATTGAATCCTTAG-AATTCTGTTAAATTACTTTGAACCGAACATGTACCTTTA---------------TACAAT
GAAAGGTCCAT---------------------------------------------------------------------
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---------------TAACGCTCTTCAAGTCTTTATTCATAGCATTGGTG-------CGTTTTTTT-GCCATCCATCCCG
GACCGCAACGGGGTCCGCGAGACGTGCAGACGTGCTAC----CTCTGCCCCCA--TGGGCCCATTGAAGTCCGCGGCTAG
AGTAGCTACAGTAGCGGGCGGTCTCCGTTTCCCAAAACTCGCGTAGGTACAAAACACGAAGCCAGGAAAGAACCAACGGG
CAGGACCAGGACTCGAAAAGCCGCTGGAACCGAGGAGACAGAGCAGGAGGGCAGGCCAGGGATTGGCGTGCCGTGTGAAC
TTGCAGCGGCGCGCCTGCAGCGCGCGCGCGCGTCCGCGTCAATCAAACCTCGGTCAAATTCGCCTCCCCGCCCCTAGCCG
CGCGTCGCGTCGCGTCCGGTCTCTGCCTCTCGCCCGCTGCCGCGTTTTGTATTCGCTTTGGGAGCTTGGACGCGGCCGGC
GATGGCGTCGGCGCCGGGGCAGTGGGCGTGGATGGCCGCGGTTGCGGCGGAGGAGCTGGCGAAGCTGGAGGCCGCGCACC
CGGGCCGCCTCGGCCCGCTCAAGGACGAGCTCAGGCGCCTCGTCTCCAAGCCCGGCTGGGACGACGACGACGCGTTCGCG
CTCGCCTGCCTGGACGGCGGCGCCCCCACCGGCTGCTCCTCCCCGTCCTCCTCGTCCCACCCTGCTGCGCCCGCGGACCT
TATGTTCACGCAAGGTACGTATACAGCGCGTCTGTGCGTTCTCTGCGTGCCATCCTCCCCTGATGATAATCCTGCGCGAG
CATCCGCGGTCACCATTAATGGCGGTCTTGCATTGCATGCGCAACCTGCAGAGTCCTCGACCAACAAGAGGAAGTGGTGC
GGC---GGCGGCGGCGCGGCCGGCCTCGAGCAGGGGAAGCGCCGGAGGAAGAATGCGGCTTCGGGGGTGAAGGACCGGGC
GGACATGGCCATCGACCGCGCCAAGAAGTGCCTGAAGAAGATACGCGCCATCAAGCGGAGCTTGCTTGCCTGTGTCACGG
ATTGAACCCAAGGAGGAAAAATCGTGCTAGCGGCTACAAGGAAGGGGAAAGGGATATGGAAGTACCGGAGATGATGGGTG
GAAAACCAGGAAATGGAATTGGCCTTTATCGATTGCCTTTTGGCTTGTAGTTTTA------CCTTTTTGAGATTGGAAAG
TGGCATTAATTCGTTGATGCGATAGTTTAGCTTTCCCAAAAGTAAACAAAATGCTAAGTACTTTAAATTACTGCAGGAAA
TCATCTAACGCAATGTTTAGAGCA--------------------------------------------------------
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>chr1A_230
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----------------------------------------------------------------------GTACATATTG
CTCGTCTCTTTTTCCTAGCTAAGGCGTTAGATTTAGAAAAGTCAATGCTTTTCTTTCCTAAAGCAAGGAATGCAATGCAA
GCAAAGATAAAACAATTTATCACGGGACTTGCAAAATTACATAGT---TAGATTTAAAATCATGTTATATTTTTCAGCAA
TATTCTCAAGGACATATATTCTTCAGCAATGGAGAAAAACATATTATTTCCAATCCTAAAAACGAATTCAATTTTCTTCT
CTAGAAATTGAATGCTTAGAAATTCTGTTAAATTATTTTGAACCAAACAGACCTTCAC-------TAGCAATATTACTAT
GAAAAGGTTCATTAACTCACCCGCAAAAAAAAAAGACGAGCAATATGGTGTGGGGGCATCTCCAATGCCCGGTGCTTAGC
ACGGGCGCCAGGATTAGACTCCTGGCTAATAGGGCGGTTAGCACTTGAATCCCGGCTTTAGGTGTGGCACCGGCGCAAGA
CCGTCGAGTGCTTGGGCATTTTCCTTCGTGCACGAAGCGCCCAGTAGTTCAGTTTAGGTCATGTAATTAGCGCTTGCCGT
TAGAAAGTCGGGCGCTTAGACACTTTTCTAATTCTTTAACATTTATTTCTATTCTCCGTTAGCGCCTTCACAAGCGTCTA
GCATTGTAGATGCCCTAACTCTCTTCAAGTCTTTATTTATAGCATTGGTGATTTTAGCGTTTTCTT-GCCATCCATCCCG
GACAGCAGCGGGGTCAGCGAGACGTGCAGACGTGCTACTCCCCTCTGCCCTCATGTGGGCCCATTGAAGTCCCT------
---------------------------------AAAACTCGCGTAGGTACAAAACACGAAGCCAG-AAAGAACCAACGGG
CAGGACCAGGACTCGAAAAGCCGCTGGAACCGAGGAGACAGAGC---AGGGCAGGGCAGGGATTGGCGTGCCGTGTGAAC
TTGCAGCGGCGCGCCTGCAGCGCGCGCGCGCGTCCGCGTCAATCAAACCTCGGTCAAACTCGCCTCCCCGCCCCTAGCCG
CGCGTCGCGTCGCGTCCAGTCTCTGCCTCTCGTCCGCTGCCGCGCTTTGTATTCGCTTTGGGAGCTTGGACGCGGCCGGC
GATGGCGTCGGCACCGGGGCAGTGGGCGTGGATGGCCGCGGTGGCGGCGGAGGAGCTGGCGAAGCTGGAGGCCACGCACC
CGGGCCGCCTCGGCCCGCTCAAGGACGAGCTCAGGCGCCTCGTCGCCGAGCCCGGCTGGGACGACGACGACGCGTTCGCG
CTCGCCTGCCTGGACGGCGGCGCCCCCGCCGGCTGCTCCTCCCCCTCCTCGTCCTCCCACCCTGCTGCGCCGGCGGACCT
TATGTTCACTCAAGGTACGTATACGGTGCGTCTGCGCGTTCTATGCGTGCCATCCTCCCCTGATAATAATCTTGCGCAAG
CATCCGCGGTCACCATTAATGGCGGTCTTGCATTGCATGCGCAACCTGCAGAGTCCTCGACCAACAAGAGGAAGTGGTGC
GGC---GGCGGCGGCGCGGTCGACCGCGAGCAGGGGAAGCGCCGGAGGAAGAATGCGGCTTCCGGGGTGAAGGACCGGGC
GGACATGGCCATCGACCGCGCCAAGAAGTGCCTGAAGAAGATACGCGCCATCAAGCGGAGCTTGCTTGCCTGTGTCACGG
ATTGAAACCAAGGAGGAAAAATCGTGCTAGCGGCTACAAGGAAGGAGGAAGGGATATGGAAGTACCGGAGATGATGGGTG
GAAAACCAGGAAATGGAATTGACCTTTATCGATTGCCTTTTGGTTTATACTA----------------------------
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>SNPs
---S-------------------------------------------S--------------------------S-----
----------S------S-----S-----S-----------S-----S-------------S------------------
--S---------------S-S--------------------S--------S-S---------------------------
S------------------S-S-------------------------S--------S-----------------------
----------------------------------------------------------S---------------------
-----S--------------------------------------------------------------------------
-----------------------------------------------------------SSSSSS---------------
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------------------------------------------------------------------S----S--------
----------------------------------------------------------------------------S---
--S-------------------------------S--------S------------------------------------
-----------------------------------------------------------------SS---------S---
--------------------------------------S-----------------------------------------
------------------------------------------------------------S-------------------
---------------------------------------------------------------------------S----
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--------------------------------------------------------S-SS---S----------------
------------------------S-------------------------------------------------------
-S-------------------------S--------------S-------------------------------------
---SSS--------------------------------------------------------------------------
---------------------------------------------------------------S----------------
----------------S---------------------------------S-----------------------------
-----------------------------------------------------SSSSSSSS--------S----------
-----SS-S------------S--------------------S---------------------S-----S---------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_122
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---------------------GCAACTTCGAGATGGCTTTCC--------------------------------------
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>reverse_2232
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-----------------------------------------------------------------------AGCCGGTCT
CATCAAAAGCA---------------------------------------------------------------------
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