>input_sequence_75766
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--------------------------------------------------------------------ATGAGGAGGCCT
GCTGGCGTGGGAGCTCGGTGGGCGCTGG------CCCTTGCGCTGGCCATGGCATCGGCA------TCGTGCTCGTGCGT
GACCCATGGTGCCAGAACCACACCAAGTAAGCCAGCCAGTCGACCGTTGCGTCGCGTGGACACGTCACTGCGTGCGTAGG
ACTCTTGCTACTTGCCAGCAGCTGACATGGCGCATGTGGCAATTGACACGTTACGTGCATTATGCAGGTTTAGGCGCCCG
CGGCCTACGACCTGGCGGTGAGGCGACGCCGTCCGGAACCGCATGCCGGGACGACGACGACGACGGAGGGCAGGCGGCAC
CACCGTCCCATCAGGAGAAGCGGGGCCAGGCGACGGGGGAGAGGGAGGAGGAACAAGGGATGACGACGCTCAAGGAGCGA
GCGGTGACGGGGTCGCGGCTGCCGGACTGCGCGCACGCGTGCGGGGCGTGCGCCCCGTGCAAGCGGGTCATGGTCAGCTT
CCGGTGCGCCGAGGCCTCCGAGTCGTGCCCCATCGCCTACCGCTGCATGTGCCGCGGCAGGTTCTTCCGCGTCCCCACCC
TCTAG---------------------------------------------------------------------------
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--
>chr2D_1_TraesCS2D01G321300
CAATACTAACTGAAGCACCGCGAGAAGTTTCAGACTTGGCACTCTCCTGCTCAGGTGGTTCCAAACCAACAAGTCTCAGA
CTTTCAGTTCATAGCCCCCTTCCGCTTGACACGAAG----------------GCTTGAACTGCGCAGTAGTTCTTAGCTC
GAAGAGCC----TATTCACTCATCCAGAAGCTCGTACCCCACGAACTCAACCTAATTCCATCCATCAGAGTATCAGACCC
ACGATGCACATGAAACAAGTGTCATGGCCGTGTCAGACGCACGCCACAAAGAGCTTG-----------------------
--GCAGCGTCAGACACGTCGGCGTGCCGGCAGCCGGTCCATGCATGCATGCATGCAGCTTACATGCGCGCCATTAAACCG
CGCAAGAGAGCAGCTCGCAGCCGCATTGATGCCGG-CCCGGCTTGACCAGAGTTGTTGTACCAGTGCATTAACCGAACCA
AAGAGGCGCAGCAGAACAGAGCAGAGCAGAATATACACGGATATATTCTGTACCCGATCGATCGCGCTCAGGATTTCAGA
AGAGTTTCAGCGGAGCAGTGTTACAGTATTA----TGAACATAAAGTATGTCCACGGGAAGCGACGTCGTCCTCCTTCGG
CCGGCCTCTCCCCCAGCTGCTCCTCTGCGGCGGCGCAATAACTGCGCCCCTGCCTGCGACGCCCAGCGGCGCGGCGATGA
GGGGCATAAATACGTAGCG---GGCAGTCGATCGATG----------------------------AGGCACATCTACTTC
TCCTCGTCTTCTTCGTGTTCGCTGGCTGCACGCAT----GCACAAGGGTTCCATGTGAGCCGACGTATCTCCACTCCGAT
CCACTGTTATTTATGATCGCTTGGCCTTGCACGCGCA--TCAGTCTCCT------CTCTGAAGCGTGCGTACGTGTATC-
-----TATATAAGCAAGCGCTCGCGAGCATCGCCTAGCTATCTTAGCTTGCCCAGCCTCGCTGTCTGCTCTCTAGCTTCC
CTCACGTACGGGT--------ACGGCTCTACCATAACGTGCGAGCTAGCTGTGGTGCGAGCCGG-TTAATGAGGAGGCCT
GCTGGCGTGGGAGCTCGGTGGGCGCTGG------CCCTTGCGCTGGCCATGGCATCGGCA------TCGTGCTCGTGCGT
GACCCATGGTGCCAGAACCACACCAAGTAAGCCAGCCAGTCGACCGTTGCGTCGCGTGGACACGTCACTGCGTGCGTAGG
ACTCTTGCTACTTGCCAGCAGCTGACATGGCGCATGTGGCAATTGACACGTTACGTGCATTATGCAGGTTTAGGCGCCCG
CGGCCTACGACCTGGCGGTGAGGCGACGCCGTCCGGAACCGCATGCCGGGACGACGACGACGACGGAGGGCAGGCGGCAC
CACCGTCCCATCAGGAGAAGCGGGGCCAGGCGACGGGGGAGAGGGAGGAGGAACAAGGGATGACGACGCTCAAGGAGCGA
GCGGTGACGGGGTCGCGGCTGCCGGACTGCGCGCACGCGTGCGGGGCGTGCGCCCCGTGCAAGCGGGTCATGGTCAGCTT
CCGGTGCGCCGAGGCCTCCGAGTCGTGCCCCATCGCCTACCGCTGCATGTGCCGCGGCAGGTTCTTCCGCGTCCCCACCC
TCTAGC---TCGCCGTGCTCTGCAACGTACCCCGGTCG-------CGCCACTACTT--------TTACCGTTTAGCTAGC
CTTGTGATTTTGCTCTTGTTTGGTGTTGGCGTGATGCTTGTGGATCGTAGGTTCCTCGAGTGTTGTAAGTATGTA---AA
AGTTAATGTGCCGCGACATATGAATCTCTTCTTTTGAAGAC------AACAAGTAGACGATGACTGATCACGGGTTAGCG
GTCGATAGAATAGCTATCGGCCGGTAGCTCGGCAGAGTTTTGCTTTACTACTACTAATATTACAAGGATTTAGCCTTAGC
ACGGACGAAGTGTA-GTGCACGTACAAGTACAATACATCAGGATTCGTACAAGTACAATACATCAGGATTCAGGAGTAGC
ATTAGCCACCACAACAATGAGTTGCAGTCAAGAGCAGCCTGCAACTGGGAACTGCTGCTGACATTTCCCCTTCCAAATTT
GACACTAATTAAAGGGACCAGCTATCTGTCGGTCATCATGTACAAAAGAGAGCTAAAAATTCTGCAACGAGGCACTACTA
GCCGGAGCTCGTCGACGAG--GACCATTTTGTTTTGTTCTTTTTTCCTGTTGTTACCTCGGGCCGGAGAGCTCCACCGCC
CGGAGGTTGTAGGTGGAGTCGACGATCCAGTCGTTGTTTCGCGGGGCCAGCTCCGCCTCCTGCCGGACCACCTCCACCTT
CTGCCACTCCTCCCAGCGCTCCGCCAGCCCGTCGCCCTCCAGCATCCTCACCACCTCCGACATCTTGGGCCGGTCCATCG
GCGACCCCTGCGTGCACAGCAGCGCCACCTGGATCAGCGCCTCCACCTCGTGCTCCACGTACACGCTCTGCAGGTCCGGG
TCCACCAGCATCTCCACCTTCTTCTCTTTCAGCAGCCCTTTCACCTGCACCCACGCCACGCACAATTCTCGGCATTACTT
TTCACTTCTCACGCTAGCCTCCTCT-------CAATCATGGATGACACATCACACATGGGAGGGACGCCAAGTGTCAGTC
AG
>chr2A_1
CAATACTAACCGAAGCACCGCGAGAAGTTTCAGACTTAGCACTCTCCTGCTCAGGTGGTTCCAAACCAACAAGTCTCAGA
CTTTCAGTTCATAGCCCCCTTCTGTTTGACACGAAG----------------GCTTGAACTGCACAGTAGTTGTTAGCTG
GAAGAGCCCGCCTATTCACTCATCCAGAAGCTCGTACCCCACGAACTCAACCTAATTCTATCCATT--------AGACCC
ACGATGCACATGAAACAAGTGTCACCACCG-------------------------TG-----------------------
--GCAGCGTCAGACACGTCGGCGTGCTGGCAGCCGGTCCA--------TGCATGCAGCTTACATGCGCGCCATTAAACCG
CGCAAGAGAGCAGCTCGCAGCCGCATTGATGCCGG-CCCGGCTTGACCAGAGTTGTTGTGCCAGTGCATTAACCGAACCA
AAGAGGCGCAGCAGAGCAGAGTAGAGCAGAATATACACGGATATATTCTGTACCCGATCGATCGCGCTCAGGGTTTCAGA
AGAGTTTCAGCGGAGCAGTGTTACAGTATTACATATGAACATAAAGTATGTCCACGGGAAGCGACGTCGTCCTCCTTCGG
CCGGCCTCTTCCCCGGCTGCTCCTCTGCGGCGGCGCAATAACTGCGCCCCTGCCTGCGACGCCCAGCGGCGCGGCGACGA
GGGGCATAAATACGTAGCG---GGCGATCGATCGATCGATCGATCACACACTGTCTGCTACTAGTAGGCACATCTACTAC
TCCTCGTCTTCTTCGTGTTCGCTGGCTGCACGCAT----GCACAAGGGTTCCATGTGAGCCGACGTATCTCCACTCCGAT
CCACTGTTATTTATGGTCGCTTGCCCTTGCACGCGCATCTCAGTCTCCT------CTCTGAAGCGTGCGTGCGTACGTGT
GTA--TATATAAGCAAGCGCTCGCGAGCATCGCCTAGCTACCTTAGCTTGCTCAGTCTCGCTGTCTGCTCTCTAGCTTCC
TCAATTCCTCCACAGACGGGCACGGCTCTACCATAACGTGCGAGCTAGCTGTGGTGCGAGCCGG-TTGATGAGGAGGCCT
GCTGGCGTGGGAGCTCGGTGGGCGCTGGCGCTGGCCCTTGCGCTGGCCA------CGGCC------TCGTGCTCGTGCGT
GACCCATGGCGCCAGAACCACACCAAGTAAGCCAGCCAGTCAGTCAAT-CGTTGCGTGGGCTCGTAACTGCGTGCGTAGG
ACTCCGGCCACTTACCAGCAGCTGACATGGTACATGTGGCAATTGACACGTTACGTGCATTATGCAGGTTCAGGCGCCGA
CGTCCTACGACCTGGCGGTGAGGCGACGCCCTCCGGAACCGCAGGCCAGGACGACTACA------GAGGACAGGCGGCAT
CCCCGTCAAATCAGCAGAAGCGGG---------------AGGGGGAGGGGCAGCAAGGGATGATGACGCTCAAGGAGCGA
GCGGTGACGGGGTCGCGGCTGCCGGACTGCGCGCACGCGTGCGGGGCGTGCGCGCCGTGCAAGCGGGTCATGGTCAGCTT
CCGGTGCGCCGAGGCCTCCGAGTCGTGCCCCATCGCCTACCGCTGCATGTGCCACGGCAGGTTCTTCCGCGTCCCCGCCC
TCTAGCGGCTCGCCGTGCTCCGCAACGTACCCCGGTCGGCGGTCGCGCCACTACTTTTAGTCTTTTACCGTTTAGCTAGC
TTTGTGATTTTGCTCTTGTTTGGTATCGGCGTGATGCTTGTGGATCGTTTGTTCCTCGAGTGTTGTAAGTATGTA---AA
AGTTAATGTG----------------------------------------------------------------------
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--
>chr2B_1
CAATACAGACTGAAGCGGCAAC--AAGTTTCAGACTTGGCACTCTCCTGCTCAGGTGGTTCCAACCCAGTAAGTCTCAGG
CTTTCAGTTCATAGCCCCCTTCCCATCTAATGGATGGATGGAATTAGGTTTCGTTTGATACGAATTGTTGTGGTTATCTG
GGAAGA---GCCTATTCGCTCATCCAGAAGCTGGTATCCCACGAACTCAATCTAATTCCACCC--------ATCAGACCC
ACGATGCACATGAAACAAGTGTCACCACCG-------------------------TGTCAGACGCACACCACAAAGAACT
TGGCAGCGTCAGACACGTCGGCGTGGTAGCAGCCGGTCCA--------TGCA--CAGCTTAAATGCGCGCCATTAAACTG
CGCAACAGAGCAGCTCGCAGCTGCATTGATGCCGGGCCCAGCTTGACCAGAGTTGTTGTACCAGTACATTAACCGAACCA
AAGAGGCGCGGCAGAGCAGAGCAGAGCAGAATATACACGGATATATTCGG-----------TCGCGCTCAGGATTTCAGA
AGAGTTTCAGCGGAGCAGTGTTACAG---TATATATAAACATAAAGTATGTCCACGGGAAGCGACGTCGTCCTCCTTCGG
CCGGCCTCTACCCCGGCTGCTCTTCTGCGGCGGCGCAATAACTGCATTG----CTGCGACGCCCAGCGGCGCGGCGATGA
GGGGCATAAATACGTGCCAGGTGGGAATCGATCGATCGATCGATCACACACTGTCTGCTA---GTGGGCACATCTACTAC
GCCTCGTCTTCTTCGTGTTCGCTGGCTGCACGCATGCACGCACAAGGGTTCCATGTGAGCCGACGTATCTCCACTCC---
--ACTGTTATTTATGATCGCTTGCCCTTGCACGCGCATC--AGTCTCCTCTCTGACTCTGAAGCGTGCATGCGTACGTGT
GTGTGTATATAAGCAAGCGCTCGCGAGCATCGCCTAGCTATCTTAGCTTGCTCAGTCTCGCTGTCTGCTCTCTGGCTTCC
TCAGTTCCT--------------------------------------GCTGTGGTGCTAGCCGGTTTAATGAGGAGGCCT
GCTGGCGTGGGAGCTCGGTGGGCGCCGGCGCTGGCCCTTGCGCTGGCCA------TGGCATTGGCGTCGTGCTCGTGCGT
GACCCATGGCGCCAGAACCACACCAAGTAAGCCAGCCAGTCGATCGTTGCGTCGCGTGGACACGCCACTGCGTGCGTAGG
ACTCTTGCTACTTACCAGCAGCTGACATGGCGCATGTGGCAATTGACACGTTACGTGCACTATGCAGGTTCAGGCGCCGA
CGGCCTACGACCTGGCCGTGAGGCGACGCCGTCCGGAACCGCAGGCCGGGACGACA---ACGACGGAGGGCAGGCGGCAT
CACCGTCCCATCAGGAGAAGCGGGGCCAGGCGACGCGGGAGGGGGAGGAGGAGCAAGGGATGATGACGCTCAAGGAGCGA
GCGGTGACGGGGTCGCGGCTGCCGGACTGCGCGCACGCGTGCGGGGCGTGCGCCCCGTGCAAGCGGGTCATGGTCAGCTT
CCGGTGCGCCGAGGCCTCCGAGTCGTGCCCCATCGCCTACCGCTGCATGTGCCGCGGCAGGTTCTTCCGCGTCCCCACCC
TCTAGC---TCGCCGTGCTCT-CAACGTACCCCGGTCG-------CGCCACTACTT--------TTACC-----------
-TTGTGATTTTGCTCTTGTTTGGTGTTGGCGTGATGCTTGTGGACCGTTTGTTCCTCGAGTGTTGTAAGTATGTAGTAAA
AGTTAATGTGCTGCGACATATCACTCTCTTCTTTTGAAGAAAAAAAGAACAAGTAGACGATGACTGATCACGGGTTAGCG
GTCATA--------------------------------------------------------------------------
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>chr2A_1817
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-------------------------------------------TTTGCTACTACTAATATT--AAGGATTTAGCCTTAGC
ACGGACGAAGTATATGTGCACGTACAAGTACAATACAG--------------------------------CAGGAGTAGC
ATTAGCCACCACAACAATGAGTTGCAGTCAAGAGCAGCCTACAACTGGGAACTGCTGCTGACATTTCCCCTTCCAAATTT
GACACTAATTAAAGGGGCCAGCTATCTGTCGGTCATCATGTACAAAAGAGAGCTAGAAATTCTGAAACGAGGCGCCACTA
GCCGGAGCTCGTCGATGAGGAGACGATTTTGTTTTCTTCTTTTTTCCTGTT---ACCTCGGGCCGGACAGCTCCACTGCC
CGGAGGTTGTAGGTGGAGTCGACGATCCAGTCGTTGTTTCGCGGGGCCAGCTCCGCCTCCTGCCGGACCACCTCCACCTT
CTGCCACTCCTCCCAGCGCTCCGCCAGCCCGTCGCCCTCCAGCATCCTCACCACCTCCGACATCTTGGGCCGGTCCATCG
GCGACCCCTGCGTGCACAGCAGCGCCACCTGGATCAGCGCCTCCACCTCGTGCTCCACGTACACGCTCTGCAGGTCCGGG
TCCACCAGCATCTCCACCTTCTTCTCTTTCAGCAGCCCTTTCACCTGCACCCACGCCACGCACAATTCTCGCCATTACTT
TACACTTCTCACGCCACCCTCCTCC-------CAATCATGGATGACACATCACACATGGGAGGGAGGCCAGGTGTCAGTC
AG
>chr2B_1837
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---------------------------------------------------------------AAGGATTTAGCCTTGGC
ACGGACGAAGTGTA-GTGCACGTACAAGTACAATACAT--------------------------------CACGAGTAGC
ATTAGCCACCACAACAATGAGTTGCAGTCAAGAGCAGCCTGCGACTGGGAACTGCTGCTGACATTTCCCCTT--AAATTT
GACACTAATTAAAGGGACCAGCTATCTGTCGGTCATCATGTACAAAAGAGAGCTAAAAATTCTGAAACGAGGCGCTGCCT
---GGAGCTTGTCGATCAGGAGACGATTTTGTTTTGTTCTTTTTTCCTGTT---ACCTCGGGCCGGACAGCTCCACCGCC
CGGAGGTTGTAGGTGGAGTCGACGATCCAGTCGTTGTTTCGCGGGGCCAGCTCCGCCTCCTGCCGGACCACCTCCACCTT
CTGCCACTCCTCCCAGCGCTCCGCCAACCCGTCGCCCTCCAGCATCCTCACCACCTCCGACATCTTGGGCCGGTCCATCG
GCGACCCCTGCGTGCACAGCAGCGCCACCTGGATCAGCGCCTCCACCTCGTGCTCCACGTACACGCTCTGCAGGTCCGGG
TCCACCAGCATCTCCACCTTCTTCTCTTTCAGCAGCCCTTTCACCTGCACCCACGCCACGCACAATTCTCGGCATTACTT
TTCACTTCTCACGCTAGCCTCCTCTCAAGTCTCAATCATGGATGACACATCACACATGGGAGGGAGGCCAAGTGTCAGTC
AG
>SNPs
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------------------------S--------------------------------------S--------S------S
-----------------------------------------------------------------SSSSSS---------
------------------------SSS---SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
--------------------------S-------------SSSSSSSS--------------------------------
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---------------S----------------------------------------------------------------
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---------S----S-----------------------------------------------------------------
--------------------------S---------S-----------------------------------------S-
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-----------------------S----------------------------------------------S---SSS-S-
---------------------------------------------------S---S------------------------
SSS-SSSSSSSSS-------------------------------------------------------------------
-------------------------------------------------SSSSSS-------------------------
---------S---------------------------------S------------------------------------
-------------S--------------------------------------------------------S-------SS
-------------------------------------------S-----------S--S--------------------S
-----------------------------------S-----S----------S----------S----------------
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S-----------------------------------------------SS------------------------------
-----------S---------S-S----------------S---------------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------------SS-----------------
--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
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----------------------------------------------------------------S--------S------
---------------S--------S--------------------------SSS-------------S------------
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--
>forward_1051
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-----------------------------------------------------------------------CTAGCTTCC
CTCACGTACGG---------------------------------------------------------------------
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--
>reverse_1947
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--------------------------GCTCGGCAGAGTTTTGCTTT----------------------------------
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--
