>input_sequence_75755
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-----------------------ATGGCCATGGCCTCCGGCTCCAGGGTTGTTGCTCCGTCACTCCTCGCCTTCGGCGGC
GGCGCCACCACCTTCGCTACCCCGCTTGCAGCATCCAAGAGAGGCGCCCG------CCTCGTAAGCAAGCGCTCCAGAAT
CTCCGCGCAGCTCGGTACCCACGATTCCTCCTCAACTTCTCTTATGTTGCATTTTGTTTTGAGTCC-ATAAGCTACGCGT
G--TATGCAGGTGGTGGTGGTGGTGGTGG---AGATGGAGAGACCAAGCCTGACGGCAAGAAGTTCATCACCAGAGAACA
GGAACCAGAACAGTAAGCAAGCGTGCATGTGCATCCATCAGCTCTCATCATC-ATATCATGAGTTCATGTATGTGTGTGG
TCTGTGGTCAATTGCCAAATGGTGTGGATAAAATGGATGATGATG-ATGATGTAGGTACTGGCAGACTGCTGGGGAGAGG
AAGGGGGAGAACCCCATGATGACGCCGCTGCCCTACATCGTCATCTTCGGCTTCTCCACCCCCTTCATCATCCTCGCCAT
CGCCTTCGCCAATGGATGGATCAAGGCGCCCCTCATCCGCTGA-------------------------------------
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>chr5D_1_TraesCS5D01G479700
GCCCACCATCTCCCCAAGTGGGAGAGTGGACGTCATAATTTGTGCTAGAGGGGGTACGCGTTCGCGCGGCCCCTGCCAAT
TCTTTGAAATTAAATCTTGGTCCTTTTGTGGTAGAGGGTAGACGAGTACGCGCGGCCCCTGCCAATCTTTGAAATTAAAT
CTTAGTCCTGTTTCGCTGGCTTACGAAGTCA---GTTTTACAATCCAGTCCTTGTTCTGGTTCATCTGTTGCACACATCG
ACGGG-------------------------------------------GAGCCAGCAACGTGTTCTCCGAACAGAGAAAA
AGAAGATTTCATA-------GGCTGGAGGGTTCTGATCCAAG---------TTTCCCTGAGCAACATGAACGGCGTATAA
CATCTGAAACTTGGGCTGTCC--GGTCGTATATTCTGGTGTTCTTCGCCTCCCGCTTACAACTAAGTAAAAATTGGCGAC
AAATTCACTTCTGCACTACTCTACTAGATATAG-----------------------------------------------
--------------------------------------------------------------------TAGGGATGAATA
AAGTCACTGCAGTCTTGAGCTTATTATAACCTGTCAGTTCAGACTTCAGACAGAGACAAGCACCCCGAGTCCAGCTTTAG
CCTGAAACAAAGTGAAATACCAACAACTTCACAATCATATGTGTCACCAACCAAGTTTGCCGGCTACCAGTTCTCTGTGG
TGAGCTGAAAAAACAACACTCCGCAAAACTCATGTGCATCTGGAGCTGGCAGCTGCCGTATATTCTGGTCCTGTTCACCT
TAATATTACAATCAAGTAAGATTTGGCCAGAACTGAACTTCTAAACATGTAGGTAGA---GATTGAAGTCGCCGTCAGTT
CAAGTAGAGACAAGCACCCCCACACAGTTTAGCATTT-------------------------------------------
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----------------------------------------------------------------------------TGAC
CAGTGTAAATGTAAATTCAACAACTTAAATCTGCCACGGAAGGAAAGATAATACGGCTAGCTCGTGGATAAGGTGAGTGC
TACGCGGCCGAAAGGTGAGGGG--GAGTGCTATAGGGTGCGTGGTGCATGAGGCAGGAGAGCTCTTTTCCTCCTCCACAC
AGACCAACCCAACAACAACCACCATGGCCATGGCCTCCGGCTCCAGGGTTGTTGCTCCGTCACTCCTCGCCTTCGGCGGC
GGCGCCACCACCTTCGCTACCCCGCTTGCAGCATCCAAGAGAGGCGCCCG------CCTCGTAAGCAAGCGCTCCAGAAT
CTCCGCGCAGCTCGGTACCCACGATTCCTCCTCAACTTCTCTTATGTTGCATTTTGTTTTGAGTCC-ATAAGCTACGCGT
G--TATGCAGGTGGTGGTGGTGGTGGTGG---AGATGGAGAGACCAAGCCTGACGGCAAGAAGTTCATCACCAGAGAACA
GGAACCAGAACAGTAAGCAAGCGTGCATGTGCATCCATCAGCTCTCATCATC-ATATCATGAGTTCATGTATGTGTGTGG
TCTGTGGTCAATTGCCAAATGGTGTGGATAAAATGGATGATGATG-ATGATGTAGGTACTGGCAGACTGCTGGGGAGAGG
AAGGGGGAGAACCCCATGATGACGCCGCTGCCCTACATCGTCATCTTCGGCTTCTCCACCCCCTTCATCATCCTCGCCAT
CGCCTTCGCCAATGGATGGATCAAGGCGCCCCTCATCCGCTGAGCTCCGGTCGAGCTCTCCTCCTTCCCCTTCCGGCGAG
AGAGACGATGACCTGCTTCCATTCTATAGAGATTACTGTAAAGCTGTATGTATGTAATTCATTTCTTCAGAGATCTTTAT
ATAGTGGAGTCACCGGTTGCTCTACATACATTCATGACTGCATCTGGTGCTGCATATAGAGTGAAAAGCCCTGCATTTGT
TGAGCTTGTGAACACTTTCCACAGTTCAAGATCGATCGATCAAGAATTT-------GGGGAAAAAGATATAATGACAACG
GTACCAGCAGCTACAGATTTCAACCAAGGAGGCAAGAATCTACACATAACCACATACAATACCACATGCCACCGCTACAG
ATTCATCTCAAGTCAGACATAC------------------ATTCTAGCAAGATTCATGAGAGTCTGCATACCATAGAATA
CCGTTGGCTATTCCTTCTCATAAACTTGCAGATAACAAAGACATGTTTTTGGGGCATAGCCAGTAGCCCACAGCAGTATA
CAGTTAAAGATTTTGCGCAAAAGGACACATCATATGGCAGCCACCTAGCTAGCGCGGTTTCCTATCAAACTCCGACTCGC
GACAGTGTGGGTCAAGCCAGTCGCGACGAGAACTCTTCGCCATGCCCCTACCATCTGTTGTCACAGCCCCCATGAGCTCT
CTTAGGCTTTCCACCTTGTTCTCCTGAGCATTGCCACTGGATTTCCTATCTGCTTCCTTCAGCTTGTTTCTGACACTCTG
CTTACGGCCAACTGTGTTAAGTTGTTGCTGCTTTGCTCCTGATGGTGGCGCCCCATGAGGTCCCAGGTATATCTTCTCCT
CTTTAGCCTGTTCATTCAAATACGAATTTACATCTCAATGAACTAATTCAAACCACTGCGCTATCCAAGTAGTTGTTCAA
GTTGCATGAACTGAAAGTCAAGTCTCATGATGGACATTGCGGCGAAAAGATCTGGAACTCGCCTGCTGAGGTTCAGGATC
CCTTGCTTTGGGGACACTGTGTGTAGTA
>chr5A_1
GCCCACCATCTCCCCAAGTGGGAGAGTGGACGTCATAATTTGTGGTAGAGGGGGTACGCGTTCGCGCGGCCCCTGCCAAT
TCTTTGAAATTAAATCTTGGTCCTC-------------------------------------------------------
--------TGTTTGGCTCGCTTACGAAGGAGTATGTTTTACAATCCAGTCCCTTGTCTGGTTGTTG-------CACATCG
AGAGG-------------------------------------------GAGCCGGCAACGTGTTCTCTGAACGGAGGAAA
AGAAGATTTCAGTATGGGCTGGATGGAGGGTTCTGAACTTCTGATCCAAGT---------------------GCATGTAA
CATCCGAATCTTGTGCTGTCAGAGGTTGTATATTCTGGTGTTCTTCACCTCCCGCTTACAACTAAGTAAATTTTGGGAAC
AAACTCACTTCTGCGCTACTCCCTCCGTTCCGAATTACTTGTCTTAGATTTCTCTAGATACGGATGTATTTAGCACTAAA
ATAAGTCTAGATACACCTGTATCTAGACAAATCTGAGACAGGTAATTCGGAACGGAGGGAGTACTAGATAGGGATGAATG
AAGTCACTGCAGTCTTGAGCTTATTATATAACCTGACAGTTG-----AGACAGAGACAAGCACCCCGAGTCTAGCTTTAG
CCTGAAACTAAGTGAAAGACCAACAACTTCACAATCATACGTGTCACCAACCAAGTTTACTAGCTACCAATTCTCTGCGG
TGAGCTGAAAAAACAACACTCCACAGAACT--------------------------CGTATATTCTGATCCTCTTTACCT
TAATATTACAATCAAGTAAAATTTGGCAAGAACTGAACCTCTACACGTGTGGATAGACCCGATTGAAGCCACTGTCAGTT
GAGGCA-----------CCCCACACAGTTTGGCATTTCGCCGCGACAAGTTCCTGACACGATACCTTGGCTCTAGTCTCA
TTTGCTTAGCATGAAACTGATTGAACGGCCACACAGTTTAGAATGTCTCCACCAAGAGTTACTACCAACATGCCAAAAGT
AACTGTGGCATCCAGTGTTGATCAGGAGATGTGAGCTGGGTGGCAAAAGAGTGTATACATCCGTCGGCCGGTAGTTTGAC
CAGTGTAAATGTGAATTCAAGAACTTAAAGCTGCCACGGAAGGGAAGATAGCACGGCTGGCTGGTGGATAAGGTGAGTGC
TACGCGGCCGAAAGGTGAGGGAGTGAGTGCTATAGGGTGCGTGGTGCATGAGGCAGGAGAGCTCTTTCCCTCCTCCACAC
AGAACAACCCAACAACGACCACCATGGCCCT------------CAGGGTTGCTCCGTCGCCGCTCCTCGCCTCCGGCGGC
GGTGCCACCGCCTTCGCCACCCCGCTTACGCCGAGGAAGAGAGGCGCCGGCCTGCTCCTCGTAAGCAAGCGCTCCAGAAT
CTCGGCGCAGCTCGGTACCCACGATTCCTCCTCAATCTCTCTTATGTTGCATTTTGTTTGAGTCCATATACGCTACGCGT
GTATATGCAGGTGGTGGTGGTGGTGGTGGTGGAGATGGAGAGACCAAGCCTGACGGCAAGAAGTTCATCACCAGAGAACA
GGAACCGGAGCAGTAAGCAAGCC------TGCACCCATCAGCTCTCATGATCCATATTATGAGTTCATCTATGTGTG--G
TCTGTGGT-------CAATTGGTGTGGATAAAATGGATGATGATGGATGATGTAGGTACTGGCAGACTGCTGGGGAGAGG
AAGGGGGAGAACCCCATGATGACGCCGCTGCCCTATATCGTCATCTTCGGCTTCTCCACCCCCTTCATCATCCTCGCCAT
CGCCTTCGCCAACGGATGGATCAAGGCGCCCCTCATCCGCTGAGCTCCGGTCGAGCTATCCTCCTCCCCCTTCCAGCGAG
AGAGATG---ACTTGCTTCCATTCTATAGAGATTGCTGTAAAGCCGTATGTA----AATCATTTCTTCAGAGATCTTTAT
ATAGTGGAGTCACCGGCTGCTCTG----CACTCATGACTGCATTTGGTTCTGCATAGAAGCG--AAAGCCCTGTGTTTGT
TAAGATTGTGAGCACTTTCAACAGTTCAAGATCGGTCGATCAAGCAATT-------GAGGAAAAATATAGAATGGCGTCG
GTACCATTAACATCAAATTTCAACAAGGAGGCAAAGAATCTACACATAAG------------CACATGCCGCCGCTACAG
ATTCATCTCAAGTCAGACATACAACAAACAACTAAACCACATTCTAGCAAGATTCATGAGATTCTGCATACCATAGAATA
CCATTGGCTATTTCTCCTCATAAACTTGCAGATAACAAAGACATGTTTTTCGGGCCTAGCCAGTAGCCCACAGCAGTATA
CAGTTAAAACTTTTGCGCAAACGGACGCATCATATGGCAGCCACCTAGCTAGCGTGGTTTCCTATCAAACTCAGACTCAC
GACAGTGTGGGTCAAGCCAGTCGCGACGAGAACTCTTCGCCATGCCCCTACTATCTGTTGTTACAGCCCCCATGAGCTCT
CTTAGGCTTTCCACCTTGTTCTCCTGAGCATTGCCACTGGATTTCCTATCTGCCTCCTTCAGCTTGTTTCTGAAACTCTG
CTTGCGGCCAACTGTGTTAAGTTGCTGCTGCTTTGCTCCTGATGGTGGCGCCCCATGAGGTCCCAAGTATATCTTCTCCT
CTTTTGCCTGTTCATTCAAATACGAGTTTAC--------------------ACCACTGTGCTAGCCAAGTGGTTGTTCAA
GTTACATTTACTGATCTAAC--------GAGGGACATTGCGGCGAAAAGATCTGTAACTCGCCTGTTGAGGTTCAGGATC
CCTTGCTTTGGGGACACTGTGTGTAGTA
>chr5B_1
GCCCACCATCTCCCCAAGTGGGAGAGTGGACGTCATAATTTGTGGTAGAGGGGGTACGCGTTCGCGCGGCCCCTGCCAAT
TCTGTAAAATTAAATTTTGGTCCTT-------------------------------------------------------
--------GGTCTGGCCTGCTTAGTGCAGCTGT--TTTTACAACCCAGTACTCGGTCAGGTACTGG-------GAGGCAG
CCAACAGCAAATCTCATTTGTTTTACACCTTCGATCACACATGAACGAGAGAGGCAAAGGTGTTCTTTGAGCAAACAAAA
AAAAGTAATGGTT--------------------TGAACTTCTGGTCCAAGTTTTCTTTTAGCAACATGAACG--ACCTAA
CATATAAATCTGGTGCTGTCA--GGTTGTATATGTTGGTGTTCTTCAGCTTCTGCTTACAACCAAGTGAAATTTGGCAAG
AAATTCACTTTTCACACGCAGAAACACCCAGATAAATTCGAGAACTTTTTTT----------------------------
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---TGCAACTGTAAATTCAAGAACTTAAATCTGCCACGGAAGGGAAGACAACACGGCTGGCTGGTGGATAAGGCGAGTGC
TACGCGGCCGAAAGGTGAGGGG--GAGT--TATAGGGTGCGTGGTGCATGAGGCAGGAGAGCTCTTTTCCTCCTCCACAC
AGACCAACCCAGCAACAGCCACCATGGCCCT------------CAGGGTTGCTCCGTCGCCGCTCCTCGCCTCCGGCGGC
GGTGCCACCGCCTTCACTACCCCGCTTACGCCCAAGAAGAGAGGCGCCGGCCTGCTCCTCCTAAGCAAGCGCTCCAGGAT
CTCCGCCCAGCTCGGTACCCACGATTCCTCCTCAATTTCTCTTATGTTGCATTTTGTTTGAGTCCGTAT--GCTACCCAT
GTATATGCAGGTGGTGGAGGTGGTGGT------GATGGAGAGACCAAGCCTGACGGCAAGAAGTTCATCACCAGAGAACA
GGAACCAGAGCAGTAAGG----------------------------------------ATGAGTTGATGTATGTGTGTGT
G-TGTGGCCAATTGCCAAATGGTGTGGATAAAATGGATGATGATG-ATGATGTAGGTACTGGCAGACTGCCGGGGAGAGG
AAGGGGGAGAACCCCATGATGACGCCGCTGCCCTACATTGTCATCTTCGGCTTCTCCACCCCCTTCATCATCCTCGCCAT
CGCCTTCGCCAACGGATGGATCAAGGCGCCCCTCATCCGCTGAGCTCTCATCGGGCTCTCGTCCTTCCCCTTCCGGCGAG
AGAGATGATGACTTGCTTCCCTTCTATAGAGATTACTGTAAAGCTGTATGTA----ATTCATTTCTTCGAAGATCTTTAT
ATAGTGGAGTCACCAGCTGCTCTG----CATTCATGACTGCACCTGGTCTTGCATATAGAGTGAAAAGCCCTGTATTTGT
TAAGCTTGTGAACACTTTCCACAGTTCAAGATCGATCGATCGATCAAGAAACTGGGGGGAAAAAATATAGAATGGCATCG
GTGCCAGCGATTAAAAATTTCAACCAAGGAGGCAAGAATCTACACATAAGCACATACAATACAACATGCCACCGCTACAG
ATTCATCTCACGTCAGACATACAACAAACAACTAA----------------------------------ACCATAGAATA
CCATTGGCTATTTCTTCTCATAAACTTGCAGATAACAAAGACATGTTTTTGGGGCCTAGCCAATAGCCCGCAGCAGTATA
CAGTTAAAGCGTTTGCGCAAACGGACACATCATATGGCAGCCACCTAGCTAGCGCGGTTTCCTATCAAACTCTGACTCAC
GACAGTGTGGGTCAAGCCAGTCGCGACGGGAACTCTTCGCCATGCCCCTACTATCTGTTGTCACAGCCCCCATGAGCTCT
CTTAGGCTTTCCACCTTGTTCTCCTGAGCATTGCCACTGGATTTCCTATCTGCTTCCTTCAGCTTGTTTCTGAAACTCTG
CTTACGGCCAACTGTGTTAAGTTGCTGCTGCTTTGCTCCTGATGGTGGCGCCCCATGAGGTCCCAGGTATATCTTCTCCT
CTTTAGCCTGTTCATTCAAATACGAATTTACATCTCAATGAACTAATTCAAACCACTGCGCTATCCAAGTAGTTGTTCAA
GTTGCATGAACTGAAAGTCAAGTCTCATGATGGACATTGCGGCGAAAAGATCTGGAACTCGCCTGCTGAGGTTCAGGATC
CCTTGCTTTGGGGACACTGTGTGTAGTA
>SNPs
--------------------------------------------S-----------------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-----S---S----------S-S-----------------------S--------S-SSSSSSSS-------
--S--------------------------------------------------S-------------S------------
------------S---------S-------------S-SSSS-------------SS-S---------------S-S---
--------S----S------S-----S-------------------S------------------------S-----S--
--------------S------S-SS--S--S-S-----------------------------------------------
-------------------------------------------------------------------------------S
----------------------------SSSSS-S-SSSSS-SSSSS------------------------S--------
--------S--------S---------------------S------------------S-SS-------S-------S--
----------------------S--S----SSSSSSSSSSSSSSSSSSSSSSSSSS-----------S----S--S----
-------------------S-------S----------S----S--S---S-S---------------S-S-S-------
S-S-S-SSSSSSSSSSS-------------S-------------------------------------------------
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--------------------S----------------------S-------S------S---S-----------------
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-----------------------------S-SSSSSSSSSSSS--------S-S-SS--S-S----------S-------
--S------S-----------------S-SS-SSSS------------S-------------------------------
-----------------------------------S-----------------------SSSSS-S----S---------
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---------S------------SSSSSSS----S--------------S--------S----------------------
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------------S-------------------------------------------------------------------
-----S------S---------------------------------------SSSS------------------------
----------------S------SSSSS--------------------S------------------------S------
-S------------------------------------------S-S------------------S---S----S--S--
---------S-----S---------------------------------S------------------------------
-------------------------------------------------------------S------------------
--S---------S------------------------------------------S------------------------
---------S-----------S--------------------------------------------------S-----S-
---------------------------------------------------S----------------------------
-------------------------------------------------------------------------S------
------------------------S-------------------------------------------------------
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>forward_963
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---------------------------------------------------------------TGAAGTCGCCGTCAGTT
CAA-----------------------------------------------------------------------------
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>reverse_2235
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--------------------------------------------------------------------------ACAACG
GTACCAGCAGCTAC------------------------------------------------------------------
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