>input_sequence_75730
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---------------------------------------------------ATGGGCTCACGGTCACAGGGATGCGGTTC
TTGCTATGTCAAAGCAATTATCAGCAGACTCAAGCCCAGATGCCTTGGAGGGAAGCCGCACCGTTG--------------
----------------------------CGAGAGCGGCGTCAGATGCGTTGAAGGGAAGCCGCAGCGTTGCGAGAGCCGT
GCCAGATGCGTTGGAGGGAAGCCGCAGCGCTATGAGAGCAGCATAGTCAAGGCAGAAGTAAGGCACGATACTCTTCAGGA
TATTCTGTACTCTCAGCAGAGCTTCGAGGGAGATGAGATTGGGGCACCATCACCTCGGAGGCATTCCCCGAAGGTTCGTC
CGCTTAACCTGGATTGCCCTTATGGGGACAACTCCCCCAGTATCCAGGATAGCTTCTCCATCGACAGGGTTACTCTGAGG
AGCCAACGCAGCGTAGCCAGGAGAGTCAGCTTCAGGTCTCCTGATCACTCCGACATATTCATCATTCCCGCACGCAACGA
TCCTGCTGGTTATTACTCCAGCGATGACGAATCCACAGAGAGTATAAGCGAAGAAGGCATTGGTGCAAAGAGACCTCGTG
GCGCCATAACCAGATACTAA------------------------------------------------------------
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>chr5D_1_TraesCS5D01G268400
GATGTATATAAACATATTTTAGTGTGTCTGTTCACTCATTTCAGTCTGTATGTGGTCCATATTGAAATATCCAAAACATC
TTATATTTATGAAAT--TAGCAAATACTATGATACTG---AACATAAAACAAATGGTCCATATGTATGGACATGGAAATT
ATATCATAGTACATGCCAAGGAAATTAATTGTCATCAGGGCATATCAGATTAAGTTACCTGCCAAGTTGCAGTACCATCG
TCTGGATTTTTTTT---ATTTATGCATGCAATGCCAAGAAGGCAAGAACAGAAAGGGTTCAAACAACGATGATGTCAGAG
TTGGTACTATGAAGAAGACTGGTTTAATTAACCACGGATTCAGGAGGCTTTCCACCTTCCAAGCATTTCACTATCCAACA
ATTTTA-AAACTTCCAAAGGCAAAAATACCAGGAAGACTAGATAACAACGGCGTGAGGACAGTGAAGAAACCTATACTTT
GGGCTCTGTTTTTGTATACACCCTGTACAAGTGGCAGCAGTGGATATCCTATGTGTTCACCTGGGAGTTCCAGCTCAGCC
ACAAGAACACAGGCAATGACAAGATTGCATAGCC-AAACCCCACCATCCACAATTCTCTAGCCAGGATTCCAAAATAGGT
CTTCGTATTCTCCGCGGATGTCTATATTGAACTCCAAATGTGACCAGGATTATTGTGATTTACATCCCTCACTGGATGCG
ATGACAACAATAATCGCACCAAGGCGAACTATAAGGTTAATTGTAAAATATAATTACCATAGCCGATGCTAGTCTGAGCT
AAGTTCTCTATGTCCCCTTCTTGGTATTCTTTGCTCCAACCTCCCTGGTTTGTCCTACTTTGGCATGACCAAGGTCTGAC
AAGGCCAAGCCCAACAAATACCAAGCAGAAGCACATGCCGTATCTATAAACTCATTTGCTAGGGGGGGCTAGCATGAACT
GCTTAAGCCATATGCTACTTCCTTTCACCACCTAAGAGA-GGAGGGAGGGAATGGGCTCACGGTCACAGGGATGCGGTTC
TTGCTATGTCAAAGCAATTATCAGCAGACTCAAGCCCAGATGCCTTGGAGGGAAGCCGCACCGTTG--------------
----------------------------CGAGAGCGGCGTCAGATGCGTTGAAGGGAAGCCGCAGCGTTGCGAGAGCCGT
GCCAGATGCGTTGGAGGGAAGCCGCAGCGCTATGAGAGCAGCATAGTCAAGGCAGAAGTAAGGCACGATACTCTTCAGGA
TATTCTGTACTCTCAGCAGAGCTTCGAGGGAGATGAGATTGGGGCACCATCACCTCGGAGGCATTCCCCGAAGGTTCGTC
CGCTTAACCTGGATTGCCCTTATGGGGACAACTCCCCCAGTATCCAGGATAGCTTCTCCATCGACAGGGTTACTCTGAGG
AGCCAACGCAGCGTAGCCAGGAGAGTCAGCTTCAGGTCTCCTGATCACTCCGACATATTCATCATTCCCGCACGCAACGA
TCCTGCTGGTTATTACTCCAGCGATGACGAATCCACAGAGAGTATAAGCGAAGAAGGCATTGGTGCAAAGAGACCTCGTG
GCGCCATAACCAGATACTAAAAGGCGCCTGCTATCTGGTACAACATCAAAAACCAAAACAGGAAGGCTGGAAGAAAAGGG
GTTCACAACCAACAAGCTCATTGCTCAGGATATTTCTTCACAGAAGATACTTAAATGGTACTGAAGCAATAGAC------
-------TAGATGGCTTACCCAGGAATATGATATTTGCCACTTTATACTCTCGAAAAGATATTTGCCACTTTAAGGCCTA
ATATATTTCATGCAGTAGTATATGTACTTTTGTGTTTCTTGCCCTTCA-CTTT-TCAACCTATTGTATTTTGTCCACCTT
GCTATTCTGAACTGGAGTGTATCTAAGAAAGAGGTTATGTACCGTACAGAATATCCTACATATGCAAGTACAAAAGCACT
TCTTCCATAAAAATACTCATTAAGCTGTACAAGGTTTATTTTCTAAGACTAGGGGCAAAAGATAAGAGACGTGCACATAT
GACCTCATAAAACAGCCATATCTATAAGATACATTCATCAACAAAGTGGCAGTTCCTAATGTGAACATACGTTCAGTGGA
TCAGGATGAGAAACACCAGGTGTTCTACTTCTGTACAGTTAGCTATATTCAGATTTGAAGCCTTCTGTCAGAGCAACAAC
CTTCGAAATTAACTTTGGCTGTAGCCTGGAAACAGCTTTCCGAATATCCTATAAAATGATAGTTTTGGTCAGATATGTAG
CGTTCTCACACAACAGTTTGATAGTTCACTAGCTACATACCTCAAGACTATATCGATTTGAGAAATGGGTGAGTATAATT
GCCTCATTTCTAAACCATTGGGAATGCTCCATTATCTAGGAACCATAAAATGGGTTTATGTTAGTGACTGATAGTACAGC
ATATGCAAATATCTACTCATCATCAGAACTGTCCCAAAGCTCATTAGGATGGCTAA-GGGTGTTAGTCTGGGAACCATTA
CCTCAGACAGATGCATGTGGCCATGTTCTCGAGCATGATCAACATCGACTTGGTCATCTAGGAAGGTTGCCTGCCA
>chr5A_1
GATGTATAGAGACATATTCTATTGTGTTTGTTCACTCATTTCAGTCCATATGTGGTCCATATTGAAATATCCAAAACATC
TTATATTTATGAAAT--TAGCAAATACTATGATACTG---AACATAAAACAAATGGTACATATGTATGGACATGGAAATT
ATATCATAGTACATGCCAAGGAAATTAATTGTCATCAGGGCATATCAGATTAAGTTACCTGCCAAGTTGCAGTACCATCG
TCTGGATTTTTTTT---ATTTATGCATGCAATGCCAAGAAGGCAAGAACAGAAAGGGATGAAACAACGATGATGTCAGAG
TTGGTACTATGAAGAAGACTGGTTTAATTAACCACGGATTCAGGAGGCTTTCCACCTTCCAAGCATTTCACTATCCAACA
ATTTTA-AAACATCTAAAGG-AAAAATACCAGGGAGACTAGATAACAACGGCGTTAGGACAGTGAAGAAACCTATACTTT
GGACTCTGTTTTTGTATACACCCTGTACAAGTGGCAGCACTGGATATCCTATGTGTTCACCTGGGAGTTCCAGCTCAGTC
ACAAGAACACAGGTAATGACAAGATTGCCTAGCC-ACACCCCACCATCCACAATTCTCTAGCCAGGATTCCAAAATAGGT
CTTCGTATACTCCGCGGATGTCTATATTGAACTCCAAATGTGACCAGGATTATTGTGATTTACATCCCTCACTGGATGCG
ATGACAACAATAATCGCACCAAGGCGAACTATAAGGTTAATTGTAAAATATAATTACCATAGCCGATGCTAATCTGAACT
AAGTTCTCTATGTCCCCTTCTTGGTGTTCTTTGCTCCAACCTCCCTGGTTTGTCCTACTTTGGCACGGCCAAGGTCTGAC
AAAGCCAAGACCAACAAATACCAAGCACAAGCACATGCCGTATCTATAAACACATTTGCTAGGGGGGACTAGCATGAACT
GCTTAAGCCATATGCTACTTCCTTTCACCACCTAAGAGAGGGAGGGAGGAAATGGGCTCACGGTCACAGGGATGCGGTTC
TTGCTATGTCAAAGCAATCATCAGCAGACTCAAGCCCAGATGCCTTGGAGGGAAGCCGCAGCGTTG--------------
----------------------------TGAGAGCGGCGCCAGATGCGCTGGAGGGAAGCCGCAGCGCTGCGAGAGCAGC
GCCAGATGCGTTGGAGGGAAGCCGCAGCGCTATGAGAGCAGCATAGTCAAGGCAGAAGTAAGGCACGATACTCTTCAGGA
TATTCTGTACTCTCAGCAGAGCTTCGAGGGAGATGAGATTGGGGCACCATCACCTCGGAGGCATTCCCCGAAGGTTCGTC
CGCTTAACCTGGATTGCCCTTATGAGGACAACTCCCCCAATATCCAGGATAGCTTCTCCATCGACAGGGTTACTCTGAGG
AGCCAACGCAGCGTAGCCAGGAGAGTCAGCTTCAGATCTCCTGATCACTCCGACATATTCATCATTCCCGCACGCAACGA
TCCTGCTGGTTATTACTCCAGCGATGACGAATCCACAGAGAGTATAAGCGAAGAAGACATTGGTGCGAAGAGACCTCATT
GTGCTATTACCAGATACTAAAAG--GCCTGCTATCTGGTGCAACATCAAAAATCAAAACAGGAAGGCTGGAAGAAAAGGG
GTTCACAACGAACAAGCTCATTGTTCAGGATATTTCTTCACGCCAGATACTTAAATGGTACTGAAGCAATGGAC------
-------TAGATGGTTTACCCAGGAATATGATATTTGCCACTTCATAATCACGAAAAGATATTTGCCACTTCAAGGCCTA
ATAAATTTCATGCAGTAGTATATGTACTTTTGTGTTTCTTGCCCTTCACCTTT-TCAACCTATTGTATTTTTTCCACCTT
GCTATTCTGAACTGAAGTGTATCTAAGAAAGAGGTTATGTACTGTACAGAATATCCTACATATGCAAGTACAAAAGCACT
TCTTCCATAAAAATACTCATTAAGCTGTACAAGGTTTATTTTCTAAGACTAGGGGCAAAAGATAAGAGACGCGCACATAT
GACCTCATAAAACAGCCATATCTATAAGATAAATTCGTCAACAAAGTGGCAGTTCCTAATGTGAACATACGTTCAGTGGA
TCAGGATGAGAAACACCAGGTGTTCTACTTCTGTACACTTAGCTATATTCAGATTTGAAGCCTTCTGTCAGAGCAACAAC
CTTCGAAATTAACTTTGGCTGTAGCCTGGAAACAGCTTTCCGAATATCCTATAAAATGATAGTTTTGGTCAGATATGTAG
CATTTTCACA--GTAGTTTGATAGTTCACTGGTTACATACCTCAAGACTATATCGATTTGAGAAATGAGTGAGTATAATT
GCCTCATTTCTAAACCATTGGGAATGCTCCATTATCTAGGAACCATAAAA-GGGTTTATGTTAGTGACTGATAGTATAAT
ATATACAAATATCTCCTCATCATCAGAATTGTCCCAAAGCTCT-----ATGGCTAGGGGGTGTCAGTATGGGAACTATTA
CCTCAGACAGATGCATGTGGCCATGCTCTCGAGCATGATCAACATCAACTTGGTCATCTAGGAAGGTTGCCTGCCA
>chr5B_1
GATGTATATAGACATATTTTAGTGTGTTTGTTCACTCATTTCAGTCCGTACGTGGTCCATATTAAAATACCCAAAACATC
TTATATTTTGAAAGGAATAGCAAATACTATGATACTGCTGAACATAAAACAAAAGGTCCACATGTATT------GAAATT
ATATCATAGTACATGCCAAGGAAATTAGTTGTCATCAGGGCATATCAGATTAAGTTACCTGCCAAGTTGCAGTACCATCG
TCTGGATTTTTTTTTTAATTTATGCATGCAATGCCAAGAACAGAAAAGGGG--------CAAACAACGATGATGTCAGAG
TTGGTACTATGAAGAAGACCGGTTTAATTAACCACATATTCAGGAGGCTTTCCACCTTCCAAGCATTTCACCATCCAACA
ATTTTTTAAACATCTAAAGG-AAAAATACCAAGAAGACTAGATAACAACGGCGTTAGGACAGTGAAGAAACCTATACTTT
GGACTCCGTTTTTGTATACACCCTGTACAAGTGGCAGCAGTGGATATCCTATGTGTTCACCTGGGAGTTCCAGCTCAGTC
ACAAGAACACAGGTCATGACAAGATTGCCTAGCCCACACCCCACCATCCACAATTCTCTAGCCAGGATTCCAAAATAGGT
CTTCGTATTCTCCGCGGATGCCTATATTGAACTCCAAATGTGACCAGGATTATTGTGATTTACATCACTCGCTGGATGCG
ATGACAACAATAATCGCACCAAGGCGAACTATAAGGTTCATTGTAAAATATAGTTACCATAGCCGATGCTAATCTGAACT
AAGTTCTCTATGTCCCCTTCTTGGTGTTCTTTGCTCCAACCTCCCTGGTTTGTCCTACTTTGGCATGACCAAGGTGTGAC
AAAGCCAAGCCCAACAAATACCAAGCAGAAGCACATGCCGTATCTATAAACACATTTGCTAGGGGGGACTGGCATGAACT
GCTTAAGCCATATGCTACTTCCTTTCACCACCTAAGAGA-GGAGGGAGGGAATGGGCTCACGGTCACAGCGATGCGGTTC
TTGCTATGTCAAAGCAATCATCAGCAGGCTCAAGCCCAGATGCCTTGGAGGGAAGCCGCAGCGTTGCGAGAGCGGCGCCA
GATGCGTTGGAGGGAAGCCGCAGCGTTGTGAGAGCGGCGCCAGATGCGTTGGAGGGAAGCCGCAGCGTTGTGAGAGCGGC
GCCAGATGCGTTGGAGGGAAGCCGCAGCGCTATGAGAGCAGCATAGTCAAGGCAGAAGTAAGGCACGATACTCTTCAGGA
TATTCTGTACTCTCAGCAGAGCTTCGAGGGGGATGAGATTGGGGCACCATCACCTCGGAGGCATTCCCCGAAGGTTCGTC
CGCTTAACCTGGATTGCCCTTACGGGGACAACTCCCCCAATATCCAGGATAGCTTCTCCATCGACAGGGTTACTCTGAGG
AGCCAACGCAGCGTAGCCAGGAGAGTCAGCTTCAGATCTCCTGATCACTCAGACATATTCATCATTCCCGCACGCAACGA
TCCTGCTGGTTATTACTCCAGTGATGAGGAATCCACAGAGAGTATAAGTGAAGAAGGCATTGGTGCAAAGAGGCCTCCTT
GTGCCATAACCAGATACTAAAAG--GCCTGCTATCTGGTGCAACATCAAAAATCAAAACAGGCAGGCTGGAAGAAAAGGG
GCTCACAACAAACAAGCTCGTTGCTCAGGCTATTTCTTTACAGAAGATACTTATATGGTACTGAAGCAATAGAAGTATGT
GTCTTGATAGTTGGTTTACCCAGGAATATGATATTTGCCACTTTAAC----------------------------GCCTA
ATATACTTCATGCAGTAGTATATGTACTTTTGTGTTTCTTGCCCTTCA-CTTTTTCAATGTATTGTATTTTTTCCAACTT
GCTGTTCTGAACTGAAGTGTATCTAAGAAAAAGGTTATGTACCGTACAGAATATCCTACATATGCAAGTACAAAAGCACT
TCTTCCATAAAAATACTCATTAAGCTGTACAAGGTTTATTTTCTAAGACTAGGGGCAAAAGATAAGAGATGCGCACATAT
GACCTCATAAAACAGCCATATCTATAAGATACATTCGTCAACAAAGTGGCAGTTCCTAATGTGAACATACGTTCAGTGGA
TCAGGATGAGAAACACCAGGTGTGCTACTTCTGTACACTTAGCTATATTCAGATTTGAAGCCTTCTGTCAGAGCAACAAC
CTTCGAAATTAACTTTGGCTGTAGCCTGGAAACAGCTTTCCGAATATCCTATAAAATGATAGTTTTGGTCAGATATGTAG
CGTTTTCACA--ACAGTTTGATAGTTCACTGGCTACATACCTCAAGACTATATCGATTCGAGAAATGGGTGAGTATAATT
GCCTCATTTCTAAACCACTGGGAATGCTCCATTATCTAGGAACCATAAAATGGGTTTATGTTAGTGACTGATAGTACATC
ATATGCAAATATCTCCTCATCATCAGAACTGTCCCAAAGCTCATTAGGATGGCTAGGGGGTGTCCGTATGGGAACCATTA
CCTCAGACAGATGCATGTGGCCATGCTCTCGGGCATGATCAACATCAACTTGGTCATCTAGGAAGGTTGCCTGCCA
>SNPs
----------S----------------S------------------S---------------------------------
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---------------------------------------------------------S----------------------
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-----------S--S-----S---------------------------------S-------------------------
--S---------------------------------------------------------------------------S-
-------------S--------------S-------S-------------------------------------------
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-----------------------------------------------------------------------S-----S--
-------------------------S------------------------------------------------------
--S------------------------------------------------S---------------S------------
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------------------S-----------------------------------------S-------------------
----------------------------S----------S-----------S-------------------------S-S
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---------------------------------------S----------------------------------------
-----------------------------------S--------------------------------------------
-----------------------------------------------------------------------------S-S
-S---------------------SS--------------S------------S---------------------------
---------S----------------------------------------------------------------------
--------------S--------------------------------S--S--------------------S--------
-----------------------------------------------------------------------S--------
--------------S-----------------------------------------------------------------
-----------------------------------------------------------------------S--------
------------------------------------S-------------------------------------------
-------------------------------------S------------------------------------------
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----S-----SS------------------S-------------------------------------------------
------------------------------------------------------------------------------S-
--------------S----------------------------------------S-------S---S------------
-------------------------S--------------------S-----------------------------
>forward_574
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--------------------------------------------------------------------------TCAGCC
ACAAGAACACAGGC------------------------------------------------------------------
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>reverse_1624
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-----------------------GCGCCTGCTATCTGGTACAA-------------------------------------
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