>input_sequence_75729
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--------------ATGGGCGCCGCCGAGGAGCA------GCACCCGCCGGCGCCGGCGCCGGCGGCTGTTGAGGAGTCG
AAGCGGACGCTGGTGTTCACGTACGGCACGCTGAAGCGGGGCTTCTCCAACCACGGGCTGCTGCAGGACCTGGCGCGGGC
GGGGGACGCGGCCTTCGTGGCCGCCGCCGCCACGGCGGACCCGCTCCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCC
TCCTCAACCTCCCCGGCGAGCACGGCTGCCAGCGCGTCCGCGGGGAGCTCTACTCCGTCACCGCCAGGGGCCTCGCCCGG
CTCGACGAGCTCGAGGGCGTGTCCCGCGCGCACTACGAGCGCCTCCCCGTCTCCGTCGTCGTCGAT---------GGCGA
GGAGGGGACAGTGGAAGAGGT---GGTGGCGTACTACGCGCACCGCGGGTACGCGGCGGAGATGTGGGCGCGGAGCGGGC
GCAGGGGCCACGCCGAGTACTCCCCGGCCGTGGCCGCCGGGTACGTCCGCCGCGTGGACCGGCCCCAGCACCTCACCTTC
CTCGACCAGATCCGCGTCTTCGTCTCCTCCCAGTCCTGA-----------------------------------------
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>chr5B_1_TraesCS5B01G554500
GAAGAAATACGAGGGCGAACCTTTGGTACCGTGGCTTACCCCGGGTTGGAGAGGCCGTCTTGGATTCTTTGGCTCTTGTT
TGCATGACATGTCTTTTTTATTTATTTGCCTTTTTGCTTAGCCTAAGCTCCGTCACTAGGTTGTAATGCTTGTTGGGTGA
AATTCATACACAAAGTGTGTATCAAAATGGACCAATTGAAAGCATAAGCATAG----TGGATGGTGAGATGGAAGACAAG
TTGGG-CCCTTGCCTGGGAACCACGGTGAGGAACGGAACGGGGGAAGGGTAACGCAGACGAGA-----------------
----GAAGAGAGAAGCCGGAATCGCCATCCAAGGGCTCAAAGAGGCTTCCCTTGGAGTGCAAGTAGTTCTCATCTACAGT
AGGATCTAGCTCTACAGCTGCACATATATTTGCCTTTTCTTTTCTTTTCTTTTGAGTTTGCCGGTTTCGTCGATTCCGAG
GTGCGGTGTGGTCGAGAGGGAGGT----------------CCGTACACGCCGTGATCGGGAGGGAGAATCTTTAGAGGCG
GAAAGGAAGAGAAAATCTCCATCACGTGCGGTGGTATGGTGCTCCTGGTCTCCTGGATGTCTCCACGTTTTCTTGTTGCC
ATCCGGCCGGCCGGCCACGT-----------------------GACACAAGCCTCGCTCCGCGCCGGCCGGGCTTTGTTT
GATTTACCATGCCATGTTGCCATGCATATCTCTTCTCATCGGGTAACATACATATGCATTTGGATGCATGTTTTCTCCGT
CGGAGA--------------------------------AATTTGAAATACCAATTTGAAGAAGCTGAGGCAGAAATTTCG
-AAAAGTTTGAATGAGACAGGCGGAGCGTGGCTGGGTGTCA---------CGAGACGAAAGCTACGGGCGACGCA-----
-------GGGCCCACGCCACGTCGACCACCGGTCCACCCCGCGTCGCCAATAAATGCAGCGC--------------CCAA
CCTACCAAACCAAACAGCCCAAGACCAAATCTCTCCTCCCTCCCCTGCCAATCAGCTCCGTCCGCCCGTCCGTA-CATCC
GCCCACCCATCCCCATGGGCGCCGCCGAGGAGCA------GCACCCGCCGGCGCCGGCGCCGGCGGCTGTTGAGGAGTCG
AAGCGGACGCTGGTGTTCACGTACGGCACGCTGAAGCGGGGCTTCTCCAACCACGGGCTGCTGCAGGACCTGGCGCGGGC
GGGGGACGCGGCCTTCGTGGCCGCCGCCGCCACGGCGGACCCGCTCCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCC
TCCTCAACCTCCCCGGCGAGCACGGCTGCCAGCGCGTCCGCGGGGAGCTCTACTCCGTCACCGCCAGGGGCCTCGCCCGG
CTCGACGAGCTCGAGGGCGTGTCCCGCGCGCACTACGAGCGCCTCCCCGTCTCCGTCGTCGTCGAT---------GGCGA
GGAGGGGACAGTGGAAGAGGT---GGTGGCGTACTACGCGCACCGCGGGTACGCGGCGGAGATGTGGGCGCGGAGCGGGC
GCAGGGGCCACGCCGAGTACTCCCCGGCCGTGGCCGCCGGGTACGTCCGCCGCGTGGACCGGCCCCAGCACCTCACCTTC
CTCGACCAGATCCGCGTCTTCGTCTCCTCCCAGTCCTGACGCGAGATTGGATGATCTTGGCTCTCGATTTCGCCGCACCG
CCGCCGCCGACGAGGACCGTACGGTCGAGTTGTTCCTCCGTTTCAGATTTGGTCTGGTGTGGTGTCGTTTGTCACTTTGC
TTCTGCGCTTATCTGTCTCCTTGTCTGGAACTGAAAGATGCGTGCCGTGCCAGATTGATAGATGGATACACTTATCAGTG
TCACAATAATAATTGTTGCTATGTGCATCCATCTTTCTACTACCTCCGTCCGGGTTTATTGATCCCCATTGTATTTTAAG
CCAAATTTTGATCATAGATTAAACTAATAAAATATTCACGCATGTCATCAAACATTATATTTTTAAAAACTATGTTCAAA
TATGTGAGTGACAACCTGACTTTGTGTATGTGCTTCAATTATGTGCCACATAGTAATTGTCAAATTTGCTTTTTTTTCAT
GGTAATACGCGTCTCATTTATAAAATAAAGATCCGATTACAAGGCGCTACAACCTACAGGAAACGGGATCGTCGCGCCGT
CGGCCAGGCTCCTCAGGTCGCCGCTGGATTGAAAATAGGATCGCCGGATCGATCGGCGACCGTGACAGTTCCAACAAGAG
GAGGAGATCACGATTTGCTGATTCCAAACAAATTTCTCCTCAAGCTTCAATTATAGGTAAAATCCTCTTTCTATAATCCC
CGGATTAATCTATT--TTTCTTCAGTCAATTTGACTCCATAGTCTTCTTATAACCCTATTCTCCATAAACTTGAAGGGAA
A-GGGAGATCTAGGCGTCCAAAGAGAAGGGGATTACCTAGCAGCAAAGTGGTCCAAGGGCAAAGTCAGCAAGGGGATCGC
ACGCCTAACTCAATCCTCCAGGTTATTTTGTTTCAATTTCATGCCAAAATTCGTGTGTTGTTTGTGTGCTAAGATTTCAT
CTAGAAAGGTAGTTAAGCTTTGTTTGAACATTGATTTGAAGATTGCTTACCGCCCTTGCTGCGCGGTAGAAAAGTAGTTT
AA
>chr4A_153
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------------------------------------------------------------------------TTGGGAGA
AATTCATACACAAA--GTGTATCAAAATGGACCAAATGAAAGCATAAGCATAGCCGATGCATGGTCAGACGAGAGACAAC
TTGGGTCCCATGCCTGAAAATCACGGTGAGGAGCGG------GGCAGGGTAACGCCGATGAGAAGTGGGTGGCTGTGAGA
TGGTGAAGAGAGAAGCCGGAATGGCCATCCAAGGGCTGAGAGAGGCTTCCCTTGGAGTGCAAGTAGTTCTCATCTACAGT
ACGATCTAGCTCTACAACTGCACATATATTTTC-----CTTTTCTTTTCTTTTGAGCTCGCCGGTTGTGTCGATTCCGAT
GTGCGGCGTGGTCAAGAGGGAGGTTGGTGCAAGCTAGCGGCCGTACACGCCGTGCTTGAGAGGGAGAATCTTTAACAAGA
GGCA-GAAGAGAAAATCTCTGTCACGTGCAGTGGTATGGTGCTTCTA--------GATGTCTCCACGTTTTCTTGTTGCC
ATCTGGCCGGCCGGCCATACCGATGTGGAGTGAGGCTTGTGTGGAAACAAGCCTCACTCCACATCGGCCGGACTTGTTTT
GATTTATCATCCCATGTTGCCATGCATATCTCATCGGTCG----AACATGCATAAGCATGTGCATGCACATTTTCTTCGC
CAGGCCAGCTGAGCTAACCACGAAGAGCGAGACAGCTGAATTTGAAATACCAATTTGAAAAGACTGAATTAGAAATTTCA
AAAAAGTTTGAATTAGACAGACGGGCCGTGGCTGGATGTCACGAGGTGACCGAGACGAAAGCTATGGTCGCCGATGGCCG
GCGAGGTGGGCCCACGCCACGTCGACCACCAGCCCACCCCGCGTCCCCAATAAATTCAGCACCCACCGCCACCGCACCAA
CCTACCAAACCAA---------GACCAAATC---CCACCCTCCCCTGCCAATCAGCTCCGCCCGTCCGTACATCGCACCC
ACCCACCCATCCCCATGGGCGCCGCCGACGAGCACCCTCAGCATCAGCCGTCTCCGGCGCCGGAGGGGGAGG------CG
AAGAGGACGCTGGTGTTCACGTACGGCACGCTGAAGCGGGGCTTCTCCAACCACTGCCTGCTGCAGGACCTGGCGCGCGC
GGGGGACGCGGCCTTCGTGGCCGCCGCCGCGACGGCCGAACCCCTCCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCC
TCCTCAACCTGCCCGGCGAGCACGGCTGCCAGCGCGTCCGCGGGGAGCTCTACTCCGTCACGCCGCACGGCCTCGCCCGG
CTGGACGAGCTGGAGGGCGTCTCGCGGGCCCACTACGAGCGCCTCCCCGTCTCCGTCGTTGTCGAT---------GGGGG
GGAAGGCGCAGCGGAAGAGGT---GGTGGCGTACTACGCGCACCGCGGGTACGCGGCGGAGATGTGGGCGCGGAGCGGGC
GGAGGGGCCACGCCGAGTACTCGCCGGCGGTGGCCGCCGGGTACGTCCGCCGCGTGGACCGGCCGCAGCACCTCACCTTC
CTCGACCAGATCCGCGTCTTCGTCTCCTCCCAGTCCT-------------------------------------------
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>chr5D_1071
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----------TGGTGTTCACGTACGGCACGCTGAAGCGGGGCTTCTCCAACCACGGGCTGCTGCAGGACCTTGCGCGCGC
GGGGGACGCGGCCTTCGTTGCCGCCGCCTCCACGGCCGCCCCGCTGCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCC
TCCTCAACCTCCCCGGTGATG------GCCAGCGCGTCAGGGGCGAGCTCTACTCGGTGACCGCCAGGGGCCTCGCCCGG
CTCGACGAGCTCGAGGGCGTCTCACGGGGGCACTACGAGCGCCTCCCCATCTCCATCGTTGTGGAGGAGCGGGAGGGGGA
GGAGGGAAGGGCCGTGGAGGGCGCGGTGGCGTACTACGCGCACCGCGGGTACGCGGCGGAGATGTGGGCGCGGAGCGGGC
GGAGGGGCCACGCCGAGTACTCGCCGGCGGTCGCCGCCGGGTACGTCCGCCGCGTGGACCGGCCCCAGCACCTCACCTTC
CTCGACCAGATCCGCGTCTTCGTATCCTCCCACTCCTAGCGCGAGATTG-------------------------------
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>chr2D_2053
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--------------------------------------------CGCTACAGCCTACGGGAAACGGGATCGTCGCGTCGT
CGGCGACGCTCCTCAGGCCGCCGCTAGATTGAAAATGGGATCGTCGGATCGATCAGCGACCATGATAGTTCGAACAAGAG
GAGGACATCACGATTTGCTCATTCCCAACAAATTTCTCCTCAAGTTTCAATAATAGGTAAAATCATCTTTCTATAATCCC
CGGGTTAATCTATT--TTTCTTCAGTCAATTTGACTTCATAATCTTCTTATAATCCTATTCTCCATAAACTTGAAGGGAA
AAGGGAGATCTAGGGGTCCAAAGACAACGGGATTACCTAGCAGCAGAGTGGTTCAAGGGCAAAGTCAGCAAGGGGATCGC
ACGCCTAACTCAATCCTCCAGGTTATTTTGTTTCAATTTAATGCCATAATTCGTGTGTTGTTTGTGTGCTAAGATTTCAT
CTAGAAAAGTAGTTAAGCTTTGTTTGAACACTGATTTGAAGATTGCTTACCGCCCCTGCCGCGCGGTAGAAAAGTAGTTT
AA
>chr5A_2053
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--------------------------------------------CGCTACAGCCTATAGGAAGCGGAATCGTCGCGTCAC
CGGCGATGCT-CTCAGGCCACCGCTGGATTGAAAATGGGATCGTCGGATTGATCAGCGACCATGACAGTTCCAACAAGAG
GAGGAGATCACGATTTGCTCATTCCCAACGCATTTCTCCTCAAGTTTCAATGATAGGCAAAATCCTCTTTCTATAATCCC
CGGGTTAATCTATT--TTTCTTCAGTCAATTTGACTCTGTAGTCTTCTTATAACCCTATTCTCCATAAAATTGAAGGGAA
AAGGGAGATATAGGGGTCCAAAGACAAGGGGATTACCTAGCAGCAGAGTGGTCCAAGGGCAAAGTCAGCAAGGGGATCGC
ATGCCTAACTTAATCCTTCAGGTTATTTTGTTTCAATTTAATGCCATAATTCATGTGTTGTTTGTGTGCTAAGATTTCAT
CTAGAAAAGTAGTTAAGCTTTGTTGG-ACATTTATTTGAAGATTGCTTACTGCCCCTGCTGCGCGGTAGAAAAGTA----
--
>chr7B_2053
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--------------------------------------------CGCTACAGCCTACTGGAAACGGGGTCATCGCGTCGG
CAGCGACGCTCCTCAGGCCGCCGCTGGATTGAAAATGGG-------GATCGATTAGCGACCGTGAGAGTTCCACCAAGAG
GAGGAGATCACGATTTGCTCATTCCCAACAAATTTCTCCTCAAGTTTCAATGACAGGTAAAATCCTCTTTCTATAATCCC
CGGGTTAATCTATT--T--CTTCGGTCAATTTGACTCCATAATCTTCTTATAACCCT-TTCTCCTTAAACTTGAAGGGAA
AAGGGAGATCTAGGGGTCGAAAGACAAGGGGATTACCTAGCAGCAGAGTGGTCCAAGGGCAAAGTCAGCAACGGAATCGC
ATGCCTAACTCAATCCTCCAGCTTATTTTGTTTTAGTTTAATGCCATAATTCGTGTGTTCTTTGTGTGCTAAGCTTTCAT
CTAGAAAAGTAGTTATGATTTGTTTGAACATTGATTTGAAGATTGCTTACCACCCCTGCTGCGCGGTAGAAAAGTAGTTT
AA
>chr2B_2053
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--------------------------------------------CGCTACAGCCTACAGGAAGCGAGATCGTCGTGTCTT
CGGCGAAGCTCCTCAGGCTGCCGCTGGATTGAAAATGGGACTGTTGGATCGATCAGCGGCCGTGACAGTACCAACAAGAG
GAAGAGATCACGATTTGCTCATTCCCAATAAATTTCTCCTTAAGTTTCAATGATAGGTAAAATCATCTTTCTATAATCCC
CGAGCAAACCTATTTTT--CTTTGATCAATTTGACTCCATAGTCTTCTTATAACCATATTCTTCATAAACTGGAAGGGAA
AAAGGAGATCTAGG-------------GGGGATTACCTAGCAGCAGAGTGGTGCAAGGGCAAAGTCGGCAAGGGGATCGC
ACGCCTAACTCAATCCTCAAGGTTATTTTGTTTCAATTTATTTCCATAATTCGTGTGTTGTTTGTGTGCTAAGATTTCAT
CAAGAAAAGTAGTTAAGCTTTGTTTGAACATTCATTTGAAGATTGCTTACCGCCCCTGGTGCGCGGTAGAAAAGTAGTTT
AA
>chr7A_2055
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----------------------------------------------CTACCGCCTACAGGAAGCGGGATCGTCACGTCGC
CAGCGACGCTCCTCAGGCCACCGCTGGATTGAAAATGGGATCGTCGGATCGATCAGCGACCGTGGCAGTTCCAACAAGAG
---GAGATCACGATTTGCTCATTCCCAACAAATTTCTCCTCAAGTTTCAATGATAGGCAAAATCCTCTTTCTATAATCCC
TGGGTTAATCTATTTTT--CTTTAGTCAATTTGACTCCATAGTCTTCTTATAACCCTATTCTCCATAAATTTGAAGGGAA
AAGGAAGATCTAGGGGTCCAAAGACAAGGGGATTACCTAGCAGCAGAGTGGTGCAAGGGCAAAGTCAGCAAGGGGATCGC
ACGCCTAACTCAATCCTCTAGGTTATTTTGTTTCAATTTAATGTCATAATTCATGTGTTGTTTGTGTGCTAAGATTTCAT
CTAGAAAAGTAGTTAAGCCTTGTTTGAACATTTATTTGAAGATTGCTTACTGCCCCTGCTGCGCGGTAGAAAAGTAATTT
AA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--
--------------SS-------------------S-----------------------S-----S---S-SS------S
---------S------SS--S-----------S---SSSSSS--S----------S--S---------------------
----------------------S--------------S-S----------------------------------------
-S--------------S--------------S-SSSSS------------------S-S-------SS-----------S
------S------S----------------------------------------S-S-S---------------SSSSSS
-SS-S--------------SS--------S-------------S--SSSSSSSSS-------------------------
---S-------------SSS-------------------------S---------S----S-SS-------S---SS---
------S---S---------------------S--SSSSSSSSS-----S----S----S--S-----SS------S--S
-S-SSS-----------------------------------------------------S-SS----SSS---------S
-------------S------S---SS---------S----------------------------S--S--S--SS-----
------------------------------S-S------------S---------S----S-------------------
-------------SSSSSSSSS---------SSS--S-----------------------S---S----S-S-S---S--
S---------------------------S--------------S-S----S-S----------S--SS-SS-SSSSSS--
---S-------------------------------------------------------------------------S--
------------------------------------S-------------------------------------------
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--------------------S--S--S--------------------------------S-----------------S--
------S----S--------------------------------------------------------------------
-S--------------------S-----S---------------------------------------------------
-------------------------------------SS----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------------------------S---
----S-S----------S------------------S------S----------S-------------------------
-------------------S-----S------------------S------S----------------------------
---S----------------------------------------------------------------------------
--------------S---------S--------------------S----------------------------------
---------------------------------------S------S---------------------------------
-------S-----------------------------------------------S------------------------
--
>forward_804
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----------------------------------------------------------------TGCATGTTTTCTCCGT
CGGA----------------------------------------------------------------------------
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>reverse_1829
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--------------------------------------------------------------------TTGTCACTTTGC
TTCTGCGC------------------------------------------------------------------------
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--
