>input_sequence_75726
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--------------------------------------------------------ATGGGTCCGTTCGACGACGACAAC
GACCGAGGCCGCCACTGTCCCATCTTCCACGACCAGTGTTGCATCATCCACGGCGTCGTCATGCCGCCTCCGCCTCCCCC
TGCCCTGCCTCCTCCGCCGCCGCCGCTC---------TTCGGCCTCCATTCGGGCCGCGCCAGCTCCAAGGCGGCAGCGT
CCCGCCACCCTGGCCTCTGCACCGAGGGCCTCGGCTCCGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGCCGGCATC
GTGGCCGACGACGACGACATTGAAGACTGCAAGACTCAGCAGCAGGGGCACTCCGACGACGACCAAGAG---GAGACGCC
GGCGCCGGCAAAGGCAAGGGGCGGCAAGAGGGTGTTCCCGCCGCCCATATCGGTGATCGGCGCCGCCGGGAAGCCGTGGC
AGTACCTGAGGGCGCAGCGTGGGGGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCC
TGCCGGGAGGACGGCCGCCTCAAGCTCCACTTTGCACACCCGGAGCAA--------------------------------
------------------GATGATGATCAGGAATGCAACAACTAG-----------------------------------
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>chr5B_1_TraesCS5B01G022400
ATGCGTCCCTCCAAATGGGTAAGACGCTTCTAGCAATCTTCTTACAATTCGACAGTTGTGAATGCTCGCCATGGGAGTGG
GCCGAGGAGCGGGTAGCCAGCCGGGCGCAAACTTGAGGGATAAGTAAGCAAGCTTGCTCTCGTCCATTTGGAGCCTTAAA
ATGAGGGACAAAACTTGACCAACTTACATGTATATATTCCTAGCTCACCTGCTCGCATTAAATTTTTATTTATTTCAGGA
TTTTCGGTGATGCGCAATCAATGAAAGAAGATGTTTCCGTCGATGACGAGGCGCCTACGACGTGACTTCGTAAATCGCAA
AATGATATGACGGCCCAGTCTTCTGGAGGTGCTCATAGGAATAAGGTGTGCGCGTGTGTTCATATGAGTGAGTGTATATG
CGTTTATATGAGCGCTTGCGTTTGTACTGTGTTTAAAAAACGATGTTTTACGTGCGTGAATTAAGATAGAGCGAAACCCG
GCGTCCAACCCATCAGCATTCAGCATGAGATAAGTACTCCGGTCAAAAGCAGCTAGCCGATGTTGCTTCCACCGCTAGAA
ATTGAAAGAAAAAACCAGGGGCCGCCGGATCGGCATCATGTCCATACCTACATACGTAACGTGATGCCACTAGCACTAGC
ACTGCACCGCACGATTCTTCTGCAGCCGAAAGAAACCTCGAGGCCACGCCGATCCGGTATCCAATCCCAGCCCACGCGCA
CGAGCAGCGGCAAAGTAGTATCTGTATCTCGCAGCCCAACGTACGCCGTAGCCTTAGACAGCTATAGACAGCATTATCAC
CACCACGGACGGACGCACGACGCAACGGAGGCAGGCCACGGGTCCCATGTCCTCTCCACCCTATATTTTACCCGCGCGCG
CGGGGATCGCAGCACCAAGGCGGCAGCAGAGTTTGAGTCCCACTCCACTTCACCACGCA--CGCGCGCGCATGGC--CGT
CGGCGTGCGCCTACGGCCACGACGGCGGCCGCCG------------GCCACCGTCTATGGGTCCGTTCGACGACGACAAC
GACCGAGGCCGCCACTGTCCCATCTTCCACGACCAGTGTTGCATCATCCACGGCGTCGTCATGCCGCCTCCGCCTCCCCC
TGCCCTGCCTCCTCCGCCGCCGCCGCTC---------TTCGGCCTCCATTCGGGCCGCGCCAGCTCCAAGGCGGCAGCGT
CCCGCCACCCTGGCCTCTGCACCGAGGGCCTCGGCTCCGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGCCGGCATC
GTGGCCGACGACGACGACATTGAAGACTGCAAGACTCAGCAGCAGGGGCACTCCGACGACGACCAAGAG---GAGACGCC
GGCGCCGGCAAAGGCAAGGGGCGGCAAGAGGGTGTTCCCGCCGCCCATATCGGTGATCGGCGCCGCCGGGAAGCCGTGGC
AGTACCTGAGGGCGCAGCGTGGGGGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCC
TGCCGGGAGGACGGCCGCCTCAAGCTCCACTTTGCACACCCGGAGCAA--------------------------------
------------------GATGATGATCAGGAATGCAACA-ACTAGGAGACTGCAAGAGCACTCAAAAGC----------
--CACAACAGAACAGGGTCCTAAGAGTTTCTTGGTTTAATAAGTTTGTTTGATTGAGTTGTCATCGTCAAAGAGTCCTAA
GAGTGCCATGGCCATGACACTGTCCTTCCTAAACTAAAGAGATGTAAATATCGAAACAAAATTGGTCAGTTTTTGCATCC
ATCATAGTCAATCTACTGCTACTTCCTCTTCAA---TCTGTCTGTCGAAAGAAGCAGATGCACGGGTCAAGGATTCAGTT
ACAAGAATCGACAAAAGAAAGGCGCGTTTGTCCTCGACATAGTTGCAACGATGCTCCCCAGCTAAGGATGAGCGTGTA--
---TACAGGCTGCAAAGCACTCTAGCTAGGCTCACAAGAACCCTGCCTGC----ACTTGGTTT-----GATGAAAAAGTA
ATACAG---CACATGTGACAGTTGGTTGATAGGTCTACATTACAGCCAAAGCAAATGGTATATATATCTTGGAGGTCAAA
GATGCTGATTCTGCCAATTATGATCCACCTATTGATTTTC----AGTAACTAAAATCAGTAACTGTAGGGGTACCACCT-
AAATGTTTCAACAAATGCGATGCAT-----CATTATTATATTGCTTTGATCCCTCATCTTCATACTTGTAGGAGCAAATA
TTCTCTTACATGACAGTATTTTATTAATGCTCTATTGGTGGAAAATCACCGAGTCGCAAACACGGGGATACGTTGCAA--
-----------------------------AGAGGCAAACCATTTCTTTTGCAGGGGGAAGCTAGACTTAC----------
-------------GGACCCTGTGTTTTCCCAGTATAG--CATTCTGGAGTTCATGTCGTCTTCATAAAAGTGGAACCTAG
GATGATGATGATGTCTTGCCATCCAACGTCAGTAGCAC-TTTGTATAGATCAGGACGCCTGTCCCTGAATATCCCCCAGC
CGTGTCTCGTA--------GATTTGATCTCGTCCAAGTCAAACTCTGCCACGAGCACCTCCTCGTCTTTGTCATTTGCAA
GCTTCACGATTTCTCCAGTTGGCCCTGCACGCA
>chr5A_926
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---------------------------------------------CACCTCACCACGTACGCGCGCGCGCATGGCCGCGA
CGGCATGCGCCCACGGCTACGACGGCGGCCTGGTGCCGCCGGCGCCGGCGCAGGCGATGGGCCCGTTCGACGACGGT---
------GGCCACCACCGTCCCGTCATCCACGACCACTATCCCATCATCCACGGCCTCGTCATGCCTCCACCTCCT-----
-------CCTCC---GCCACCGCCGCCGCCTCCTTCTTTCCATCTCCATTCGGGCCACGCCAGCTCCAAGGCGGCAGCGT
CTCGCCACCCCGGCCTCTGCACCGAGGGCCTCGGCTCGGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGGCGACATC
GTGGCCGACGA---CGACATTCAAGACTGCA---------AGCAGG------------GCGACCAGGAGCTAGGGGCGCT
GATGCCGGCGAGG------------AAAAGGGTGTTCCCGCCGCCGATATCGGTGATCGGCGCGGCCGGGAAGCCGTGGC
AGTACCTGAGGGCGCAGCGCGGGGGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCC
TGCCGGGAGGACGGCCGCCTCAAGCTCCACTTTGCACACCCGGAGCCGGAGCCGGAGCCGGAGCCAGAGGAAGAAAACAA
CACCATCTAGCTGATGGTGATCAGGAGGAGGAATGCAACAAACCAGCAGACTGCAATATGACAGTCAAAAGAGAAGAGCC
AACAGAACATAACAGGGTTTTGGT--TTTCTCGGTTTAATAAGTATGAGTTATTA------TATCGTCAAAGAGTTCTAA
GAGTGCCATGGCCATGGCAGTGTCCTTCC------AAAGAGATGTAAATATTGCAACAAAATTGGTCAGTCTTTGCATC-
--CATCGTCGATCTACTGCTACTTCCTCCTCTGTCTTCTGTCTGTCGAAAGAAGCAGATGCACGGGTCAAGGATTCAGGT
ACAAGAATCAACAAAAGAAAGACGCGTTTGTCCTCGACATAGTCGCAATGATGCTCCACAGCTAAGGATGAGCGTGTATA
CAGTACAGGCTGCAAAGCACT----CTAGGCTCACAAGAACCCTGCCTGCCTGGACTTGGTTT-----GATGAAAAAGGA
ATACTACAACACATGTGACAGTTGGTTGACAGGTTTACATTACAGCCAAAGCAAAGGG------TATCTTGGGGGTCAAA
GATGCTGATTCTGCCAATTATCATCCACCTCTTCATTTTAAGCAAGTGATTAAAAACACTAACTGTAGGAGTATAGTAAA
AAATGTTTCAACAACTGTGAAGCAGTGATGCATTATTATCCTTCATGTTTCGAACATTTTGTTTCTGGTCACATGG----
-----TTACATTGCAGCATTTTGTTGATGCTATATTGGTGGAAAGCCACCAAGCTGCAAACACAGAGATACCTCAACATT
TGGTGCGGCACATGTATTA-------------------------------------------------------------
--------TTCCTGGACCCTCTGTTTTCCCGGT-------ATTTTGGAGCTCATGTCCTTCTCATACAAGTGGGACCCAG
---GATGATGATGTCTTGCCATCCAACGTCAACAGCACTTTTGTATAGATCAGGACGCATGTCCCTGAATATACCCCAAC
AGCACGCTGTATAGATCAGGAATTGACCTCGTCCAAGTCGAACTCTGCTGCAAGCACCTCCTCGTCTTCGTCATTTGCAA
GCTTGATGATCTCTTCAGTTGGCCCTGCA----
>chr5D_941
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--------------------------------------------------------------GCGCGCGCATGGCCGCGA
CGGCATGCGCCTACGGCTACGACGGCGGCCTGGTGCCGCCG---CCGCCGCAGGCGATGGACGCGTTCGACGACAGCGCC
CGAGGCCGCCGCCACTGTCCCATCATCCACGACCACTATTCCATCATCAACGGCCTCGTCATGCCTCCACCTCCT-----
-------CCTCCTCCGCCGCCGCCGCCGCCACCACCTTTCCATCTCCCTTCGG---GCGCCAGCTCCAAGGCGGCAGCGT
CTCGCCACCCCGGCCTCTGCACCGAGGGCCTCGGCTCGGAGAGCTCCGAGAGCTCGGGCGACCTCGACCTCGGCGACATC
GTGGCCGACGA---CGACATTGAAGACTGCAAGAGGCGGCAGCAGG------------ACGACCAGGAG---GAGACGCT
GATGCCGGCGAGG------------AAAAGGGTGTTTCCCCCGCCCATATCGGTGATCGGCGCCGCCGGGAAGCCGTGGC
AGTACCTGAGGGCGCAGCGCGGGGGCGGCCGGCTGGTGCTGCGGGAGGTGAGGATACCGTCGCGGGAGCTGCTCCACGCC
TGCCGGGAGGACGGCCGCCTCAAGCTCCACTTTGCCCACCCGGAGCCGGAGGAACAT-----------------------
CACCATCTTGCTGATGATGATGAGGAGGAGGAATGCAACA-ACCAGCAGACTGCAATATAACAGTCAAAAGAGAAGAACC
A-----ACACAACAGGGATTT---AGTTTCTTGGTTTAATAAGTTT-------TGAGTTATTATCGTCAAAGAGTCCTAA
GAGTG-----------------TCCTTCC------AAAGAGATGTAAATATCGCAACAAAATTGGTCAGTTTTTGCATC-
--CATCGTCGATCTACTGCTACTTCCTCTTCTGTCTGTCCAAG-----AAGAAGCAGATGCACGGGTCAAGGATTCAGTT
ACAAGAATCAGCAAGAGAAAGACGCGTTTGTCCTCGACATAGTCGCAATGATGCTCCCCAGCTAAGGATGAGCGTGT---
--GTACAGGCTGCAAAGCACT----CTAAGCTCACAAGAACCCTGCATCG----ACTTGGTTTTTGGTGATGAAAAAGGA
GCACCC---GGCATGTGACAGTTGGTTGATAGGTCTGCATCACAGCCAAAGCAAATGGTATCTTG-----GGGGGTCAAA
GATGCTGATTCCGCCAATTATGATCCACTACTTCATTGTC----AGTAACTAAAATCAGTAACTGTATGAGTATAATC-A
AAATGTTTCAACAACTGTGAAGCAGTGATGCATTATTATGCTTCATGTTCAAACATTTTTGTTTCTGGTCACATCG----
-----TTAC-----------------ATGCTATATTGGTGGAAAACCACCAAGCTGCAAACACAGAGATACCTCAACATT
TGGTGCAGCAGATGTATTA-------------------------------------------------------------
--------TTCCTGGACCCTCTGTTTTCCCGGT-------ATTGTGGACCTCATGTCCTTCTCATAGAAGTGGGACCTAG
---GATGATG---------------ACGTCAGTAGCAC-TTTGTATAGATCAGGACGCATGTCCCTGAATATACCCCAAC
AGCACGCTGTATATATCAGGAATTGATCTCGTCCAAGTCGAACTCTGCTGCAACCACCTCCTCGTCTTTGTCATTTGAAA
GCTTGACGATTTCTTCAGTTGGCCCTGCA----
>chr5A_2044
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--------------------------------------------------------------------------GTCAAA
GATGCTGATTCTGCAAATTATGATCCACCTATTGA-TTTC----AGTAACTAAAATCAATAACTGCAGGAGTATCACC-A
AAATGTTCCAACAAATGCTATGCAT-----CATTATTATATTGCTTTGATCCCTCATGTCCATAACTGTAGGAACAAATA
TTCTCTTACATGACAGTATTTTATTAATGCTCTATTGGCGGAAAATCACCAAGTTGCAAACACAGGGATACCTTTTTTTT
TGCGGGGGAAACACAGGGATACCTTGCACAGAGGCAAATCATTCTTTTTGCAGGGAGAAGCTAGACTTACAAACGATCTA
CCATTTGGTTCGTGGACCCCGTGTTTTCCCAAGATAGAGCATTGTGGAGCTCATGTCCTCTTCATAAAAGTGGAACCTAG
---GATGATGATGTCTTGCCATCCAACGTCAGTAGCAC-TTTGTATAGATCAGGACGCCTGTCCCTGAATATACCCCAGC
CGTGCCTCGTA--------GATTTGATCTCGTCCAAGTCAAACTCCGCGACGAGCACCTCCTCGTCTTTGTCATTTGCAA
GCTTCACGATTTCTCCAGTTGGCCCTGCACACA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------S---------------------S
----S------------S------------SSSS---------------S-S-S-S-----S-------------S-SS-
SSSS-S------------------S----------S-S--S-------------S----------S--S--S---SSSSS
SSSSSSS-------------------SS------------SSS-------------------------------------
-S--------S--------------------------S----------------------------------S--S----
-----------SSS--------------------SS-S--------SSSSSSSSSSSS-------S-------------S
-SS------S-S-SSSSSSSSSSSS--S----------------------------------------------------
-------------------S------------------------------------------------------------
----------------------------------------------SS--------------------------------
-----------------------S--SS---------------S--S---------S-SS--SSSS--SS----------
----S----S--------SS-SSS-----------------------SS-S--------S-S------------------
----------------S--S---------SSSSSS------------------S-------------------------S
SS---S---S---------------------SS-----------------------------------------------
---------S-----------S---------------------S----S-------------------------------
---------------------SSSS-----------------------------------------------------S-
----SS-------------------------------------------------------S-S--------S-------
---------------------------------------------------------------------S---S----S-
---------------------------------------------------------S---------------S------
--------------------------------------------------S---S--------S-------S--SSS---
--------------------------------------S----SS----------S------------------------
-------------------------------------------S-----S-------S----------------------
SSS---------------------------------------------------------------------S-------
----S-------------------------------------------S-------------------------------
------------------------------S--
>forward_863
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-------------------------------------------CCCATGTCCTCTCCACCCTA-----------------
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>reverse_2371
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--------------------------------------------------GAGTCGCAAACACGGGGATA----------
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