>input_sequence_75710
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---------------------------ATGAGGAAGGCG---------------GTGGTCGGCAGCGTCTACTCCAATGG
TGCTGGCTGGGTATCGGTGGCGCAGTCTAAAGTTATCATGGAGTATTTGTTTGATTTTTCAAAGCAGCTTCAGGTTGATT
TCGTCAAGTTTTTCTCTGCTG------ACCCTCTT------GGACATCGCAGCGACGTCAGGTGTTTCCTACTGGATTTT
GTTGGGGAAGTCTTTTTCATCACAAAGGGATGGGAACGTGTT---GCGGTTCTCGGCATTGAGCCAAAGAAGAAACAGGC
GTTCATGCCCGTGAAGACTTTCGGCAGGTACACCATCTTCATCGGCCATCAAAGGTGCCTGGTTGTTGATGCCGCCAAGT
TCCCATCCGTCGAGGCAGACTGTGTCTACTACACCCAAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAACATCAGA
GATGGGAAAGACGAGAGGGTATATGATGTCGTCAATTTCATCAAGGAGGACAAGCAGTTTGTCTCCTCCGGCCCCCGTCC
TTTCACCATCATTCATCTTCTCTCGAGCTACACGATCAACCTCAGCAATTCTGAATTGGTCTGA----------------
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>chr3D_1_TraesCS3D01G458800
GTTGTTTATCTTCAAAATAATCCAGAGGAGAGTGGGGGTAAAAATGGACACGTGCGCGCTTTTCTTCTTCTCCCCGGAAC
CATTCCCCCCATTTCCACCCGGAATCCCTA---------GCCGCCGCCGCCGCCGCCGCCATCCGATTTTACCCCACCTG
CTTCTGATCGGTGCTGCTCCTCGCTAGATCTATCTGGTAACTAAATCCTCTTCTGCTTCTTTACGGCGGAGATTGTCT-C
CTTTCAAGTTTCCGTCGC------CGCTCGCTTGCTAAAAAGTTGCGTCTTTTGTACGGGGGCAATGGGGGTTTGCAGCC
AGCTGAGGCAATGGCGGCCGCACCAACCGGCGTTGAGGTTCCGACGCCCTTGAGCGCCCCTGTTCTTCCGTCAATGGCGG
CCGCGCCGACCCGCGTTGAGGTTCCGACGCCCTTGGCCGCCCCTGTTCCTCCGTCCATGGCGGCCGCCGTCTGGTCCTCA
CTCCCGACCGACCTCGTCCTCTGCATCGCC-ACTG-CCTCCTCGACACCAACGACGTCGACAGCTATGTAGACCTCCGCG
CCGTCTGCCACAACTGGCGGTGCGCCACCGAAGACCCTAGGAGCGACGCGTCCGACCCCCGCTTCCACCCGCGCTTCTGG
ACAGTCCTCGACGTCGACGGGGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTGAACACCGCCACCGGCCGCTTCCTTCG
CAAGCAGCTCCCGCTGCTCCGCCACTACTACGTGGTCACCACCACTGCCAACGGCTTCTTCGTCCTGGCTGACAGGAGTC
CACCTCACGCCGCTCGGGTCCTCAACCCTCTCACAGGCGCCG-TGGTCGTTTTCAAGGCGCCTGTGCCCCGGGACGCGTC
CGTTGCCGTTTTCTTCTCCTCTGGCGGCACTCCGCGCAATCTCATCGTGCTCTGCGACTCAACTCCCAAGTATTACAGGG
CTTTTCGGGACAG------------------------------------------------TGAAAGTTTCATCGCCGGG
AACATCAACCATGTTTTTTACAGTTATATGAGGAAGGCG---------------GTGGTCGGCAGCGTCTACTCCAATGG
TGCTGGCTGGGTATCGGTGGCGCAGTCTAAAGTTATCATGGAGTATTTGTTTGATTTTTCAAAGCAGCTTCAGGTTGATT
TCGTCAAGTTTTTCTCTGCTG------ACCCTCTT------GGACATCGCAGCGACGTCAGGTGTTTCCTACTGGATTTT
GTTGGGGAAGTCTTTTTCATCACAAAGGGATGGGAACGTGTT---GCGGTTCTCGGCATTGAGCCAAAGAAGAAACAGGC
GTTCATGCCCGTGAAGACTTTCGGCAGGTACACCATCTTCATCGGCCATCAAAGGTGCCTGGTTGTTGATGCCGCCAAGT
TCCCATCCGTCGAGGCAGACTGTGTCTACTACACCCAAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAACATCAGA
GATGGGAAAGACGAGAGGGTATATGATGTCGTCAATTTCATCAAGGAGGACAAGCAGTTTGTCTCCTCCGGCCCCCGTCC
TTTCACCATCATTCATCTTCTCTCGAGCTACACGATCAACCTCAGCAATTCTGAATTGGTCTGATAGCAAATCTCC-GGA
AGGCGCCGACAACTCTACTTTATCTAGTTTA---ACTCGCTCC----------------------------GCCTTGACT
TATTCCAGGCAGGAAACAAGTTGACTCTAGGAGTGTAGTTTGGATCACCTGTGTTGGAATGAACTACTGTAAGCTGCTTA
ATTAGGACATGGTATCGACCTAA---TGCTACATCCATTGTGATTGATGCTATCTATTGTCTCTGTGTGCTCTTGCCTCT
TCCCTTGCATTAGTACTTCTTAGCAATGCAATCTGGTTTTTTTCTTCACTCGCAAAAAAAAAAAAGCAATTTGGTTTGTT
TGCTGCTGAAATTTTCGCTCAATTTTAGCCCGTTTTCTGAGTTCTCGCTCTGTTGTTCTCTGGTGGCCTTATTAATTCCT
CAATGTCTTGTTCCAGTGAAGAAACATGTTTTAGAATTG--CTCACCGGTCGTCTGTGGAACATAGCATGAATGCCATGT
CCATATGTAAAGTTTCATCTACTTCTGTGTATGCTTCACCCCCTTATAGTAGCAACCTGCTTTTGTGACACAATGGCTTT
TAAGAATTTAAGATATTGCTTTGCAACTCACCGTTGCTA-----------------------------------------
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CTAAGAGCATCAGACTCAAGACGCGCTTTGGATATGAGAAAGAAAAAACCTGACACAGTATTGAGTTGCTGTTTCAAAGA
CGGGGTTTGTAGATTCAGATGTTTCACTTTTGTGTATACCGCATTCCTGTTCTGAAGTTATCAGGTGTTTTGCCTTGACT
TGTTCTGGGCAAGAAGCAGGTTGACTCTTGAAGTC---------------------------------------------
-------------------------------------------------TAGTTTATATCACCGGTGGTGAAACTACTGT
AAGCTTTCTTAATTTAGTACGTACATGCATGGTATCAATCTAATGCTACACCTATTATGTTTGATGCTATCTTCCGTCTG
TGTACTGTGTTTGCACTTGTTCTTCCCTCTTGCATGACTTCTTAGCAACGCAATCTGGTGCTTTTTATTTGCTGTTGAAA
TTTTGGCTCAATTTTTGCCATTTCTGAATTTTCCTC
>chr3A_48
-----------------------------------------------ACACGTGCGCGCTTCTCTTCTTCTCCCCGGAAC
CATTCCCCCCATTTCCACCCGGAATCCCA-------------------GCCGCCGCCGCCATCCGATTTTACCCCACCTG
CTTCTGCTCGGTGCTGCTCCTCGCTAGATCTATCTGGTAACTAAATCCTCTTCTGCTTCTTTATGGTGGAGATTGTCTAC
CTTTCAAGTTTCCGTCGC------CGCTCGCTTGCTAAAAAGTTGCGTCTTTTGTACGGGGGCAATGGGGATTTGCAGCC
AGCTGAGGCAATGGCGGCCGCACCAACCGGCGTTGAGGTTCCGAAGCCCTTGAGCGCCCCTGTTCTTCCGTCCATGGCGG
CCGCGCCGACCCGCGTTGAGGTTCCGACGCGCTTGGCCGCCCCTGTTCCTCCGTCCATGGCGGCCGCCGGCTGGTCCTCG
CTCCCGACCGACCTCGTGCGCCGCATCGCCGACTG-CCTCCTCGACACCAACGACGTCGACTGCTATGTGGACCTCCGCG
CCGTCTGCCACAACTGGCGGTCCGCCACCGAAGACCCTAGGACCGACGCGTCCGACCCCCGCTTCTACCCGCGCTTCTGG
ATAGTCCTCGACGACGACGGGGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTGAACACCGCCACCGGCCGCTTCCTCCG
CAAGCAGCTCCCGCTGCCCCGCCACTACTACGTGGTCACCACCACTGTCAACGGCTTCTTCGTCCTGGCCGACAGGAGCC
CACCTCACGCCGCTCGCGTCCTCAACCCTCTCACAGGCGCCG-TGGTCGTTTTCAAGGCGCCCATGCCCCGGGACGCGTC
CGTTGCCGTTTTCTTCTCCTGTGGCGGCACTGCGCACAATCTCACCGTGCTCTGCGACTCAACTCGTAAGTATTACACGG
CTGTTCCGGACAG------------------------------------------------GGAAAGTTTCGTCGCCGGG
GACATCGACGATGTTTTTTACCATTATATGAGGAAGGTG---------------GTGGTCGGCATTGTCTACTCCAATGG
TGCTGGTTGGGTATCCGTGGCGCAGTCTAATGTCATCATGGAGTATTTGCTCGATTTGTCAGAGAAGCTTCAGATTGATT
TCGTCAAGTTTTTCTCTGTCG------ACCCTCTT------GGAGATCACAGCGACGTCCGTTGTTTCCTACTGCATTTT
GGTGGGGAAGTCTTTTTCATCACAATGGCATTAGAACGCATT---GCGCTTCTCGGCATGGAGCCAACGGAGAAACAGGC
GCTCACGCATGTGAAGACCGTGGGCAGGTACGCCATCTTCATCGGCCATCAAAGGTGCCTGGTTGTTGATGCCGCTAAGT
TCCCATCCGTCGAGGCAGACTGTGTCTACTACACCCAAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAACACCAGA
GATGGGAAAGACGAGAGGGTGTATGATGACATCAATTTCGTCAAGGAGGACAAGCAGTTTGTCTTCTCCGGCCGCCGTCC
TTTCACCATCATCCAGCTTCTCTCGAGCTACACCATCAACCTCAGTAATTCTGAATTTGTCTGACAGGAAATCT-C-GGA
AGGCGCCGACAACTCTACTTTATCTAGTTTA---ACTCGCTCCCTTCCACTACAG----GTCTTTTGTGTTGCCCTGACT
TGTTCCAGGCAGGAAACAAGTTGACTCTAGGAGTGTAGTTTAGATCACCTGTGCTGGAATGAACTACTGTAAGCTGCTTA
ATTAGCACATGGTATCGACCTAA---TGCTACATCCATTGTTATTGGTGCTATCTATTGTCTCTGTGTGCTCTTGCCTCT
TCCCTTGCAT---TACTACTTAGCAATGCAATCTGGTTT--------------------------------------GTT
TGCTGCTGAAATTTTCGCTCAATTTTAGCCCGTTTTCTGAGTTCTCACTCTGCTGTTCTCTGTTGGCCTTATTAATTTTT
CAGTGTCTTGTTCCAGTGAAGAAAAATGTTTTAGAATTGCGCTCACCGGTCTTCTGTGGAACATAACATGA-TGCCATGT
CCATATGTAAAGTTTCATCTACTTCTGTGTATGCTTCACCCCCTTATACTATCTACTTGCTTTTGTGACACAG-------
---------------------------TCACCGTTGCTACTAAGGGCATCTCCAGCCGCGCCCCCAGGAAGGCCTCCCCA
GGCGATTTTTTCGCGCCGGCACCAAAAAAACGGCCCAGTCGCGCCCCGAGGAGCCCGATTTTCGCCGGCCTGGGCCGAAA
ACAGCGCCGACGGACCCAGGCCGAACCCGGCGCACTGGGGGGCGCCCGGGGGCGCCGGGACGAACTGTTTTGGCGAGAAA
CAGCCGCGGGCCCGCCGCGTCAGCGACACGGCGCCTCGTCTTCCCCCAACGGCCTCGGTTCCCGCGGGGAATCAATGCCA
AGGCTGCCGCCGGTCAGCCTTGCCATTGATTCCTCACGGGCGGCGCGTCACGGGACGGCGCGCCGACGCCTCCCCTCCCT
CGCACGCGTACACACGGGTGCGGCGCGGCTATATAGCCGGTGGCCTGCACTCGCCTGTGCCCACACCAGCCCCACCCCTC
GCCGCCGCCCAGCTCCTCCCTCTCCCTACCTCTCCCGAGCGCCGCCGCCCAGCCCCTCCCTCTATCTCTCTACCTCTCCC
GAGCCCGTCGCCATGGCGGAACGCTACCCCGGAGACGAGGCGGCGGCCAACGGCTTCGGCCGCCGTTCGCTCCGCGAACA
GGAGTCCTGACTCCTGTTTCAGGCGAACATCCGGCGCCGCCGGACATGCGCGCCGGGCCGACGGGGTGGAGGCTCAGCGC
CAGGGGAGTGCCCATTCCCCCATTGCCCGACGCCGTGGCGAAGCCGACGTACTTCGCCGAGGAAGTCGAGGTCGTGCGCG
CCTCCCTCACCGACGCCCAACTCTCCCTCCCCCAGTACGCCGCCGACAACCACGCGGCTTGGGCGGCGTATTTCGAGCGC
CGCCAGCAGCAGCACTTGGCGTCCATCAACGGCGCGCCGGTGGTTGGCGGCCGGCAGAACAGCGAGGGGCGCCACCTGTG
GTGGGGCGTCCCCGGCCGCACACTCGAGGGCGTGCTGATGTACCTCGAGGGCGGCAACGACCCGCCGTTGGCGTACCCAG
CGAGGGCGACCGCCCCGGCGCAGCACCGACGCGCCGGGCCATGGGCGCCAAGGAGGTTCGGGTCCTCCTCCTTTTCTTCC
TCCTCCCGATCTTTATCGCACTCCTCCGGCACTCCGGCCCTGCTCGGCGTCAAGGCCGAGCCCGCGGCAGAGACGCCGCT
CGGCCGGCGCACCCGCAGCGCCAGCATCGTCATCAACGAGGGCGTTCGGCGCGCCTCCTCGTCGGCTCCTCCTCCGCGCT
TCATCAAGCCAAAGACGGAGCCGGGGCTCGCGCCGGTGAAGACGGAGCCGGGGCTCGCGCCGGTGAAGAAGGAGCCGGCC
GCGCCGGTGACGACGGAGCTCGACGACGATGAAGTGGCCCTGGAATGGACGCGCAGGGACTCCATAGCGATGGAGAAGGA
GCGCCTGGAGAAGGCGAAGGAGCGCCAGCGCGCCGCCCTGCTTTGCTTCGCGGAACGTCGACGCGGCCGTGACGAAGGCG
GAGTCGTCGTCATCTGCGACAGCGACGACGACGACGACGATGCGCCGCCACCAGTCCGCCATGGCGACGCCGGGCAGGGG
TCCAGTAGGGGCGTCCGCGTCAAGGAGGAGAAGGCCGACGACGACGATGGCGGCGACTTCAGCCCCTTTCTTTTTTAGAT
TAGGTTAATGTAATGAAAATGCGCAAATTTCGCCGAAATTTGCCATGTTTGACCGAAATTTAACTAGTTTTTATCATAAC
TTCGCCGAACGGTTTTTTTTATTATTTTAATACGCGCACGGGGACGGCCCTGGGGGCCGACGGCTGGGGACCGACTCGCC
CCCAGGGCCATTTTTTACGCCGGCTCACCCCCAGGCGGCGCTTTTAGACGCCCCCTGGGGGGGCAACGGCTGAAGATGCC
CTAAGAGCTTAAGATTTAAGACGTGCTTTGGATATGAGGG-GAAAAAATCTGACACAATATTGAGTTGCTGTTTCGAAGA
CAGGG-TTGTAGATTCAGATGTTTTACTTTCGTGTATACTGCATTCCTGTTCTGAGTTATCA--GTGTTTTGCCTTGACT
TGTTCCAGGCAAGAAACAGGTTGACTCTTGAAGTC---------------------------------------------
-------------------------------------------------TAGTTTATATCACCGGTGGTGAAACTACTGT
AAGG-TTCTTAATTTAGTAC--------ATGGCATCAATCTAACGCTACATCTATC------------------------
------GTGTTTGCACTTGTTCTTCCCTCTTGCATGACTTCTTAGCAACGCAATCTGGTGTTTTTTATTTGCTGTTGCAA
TTTTGGCCCATTTTTTGCCATTTCTGAATCTTCCTC
>chr3A_65
----------------------------------------------------------------TTCTTGTCCCTGGACC
ATTTCCCCTCTTTCCCCCG--GAATCCCTAGCTGCTGCTGCCGCCGTCGCCGCCGCCGCCATTCGATCTACCAACT-CTG
CTTCTTCTTGGTGCTGTTCCTCTGTAGATCTATCCGGTAACTAAATCCTCTTCTCTTTCCTTACCGCGGCGATTGTCTAC
TTTTCAAGTTTCCATTGCGCCGGTCGCTCGCTTGCTAAAAAGTTGCGTCTTTTTGTACGGCGGCATTGGGGTTTGCAGCT
AGCTGAGGCCTGAGG--------------------------------------------------------CGATGGCGG
CCGCGCCCG---GCGATGAGGTTCCGACGCCTTTCGCGGCCCCTGTTCCTCCGGCCACGGCTGTTGCTGGCTGGTCCTCG
CTACCGACCGACCTCGTGCGCCGCATCGCCGACTG-CCTCCTCGACACCAACGACGTCGACTGCTATGTGGACCTCCGCG
CCGTCTGCCACAACTGGCGCTCCGCCACCGACGACCCGAGGAGCGACGTCTCCGACCCCCGCTTCCACCCGCGCTTCTGG
ATAGTCCTCGACGACGACGGGGCCTTCCAGAGCGACGACAGCCGGGTCTTGGTGAACACCGCCACCGGCCGCTTCCTCCG
CAAGAAGCTCCCGCTGCCCCGCCACTACTACGTGGTCACCACCACTGTCAGCGGCTTCTTCGTCCTGGCCGACAGGAGCC
CGCCTCACGCTGCTCGCGTCCTCAACCCTCTCATAGGCGCCG-TGGTCCGTTTCAAGGCGCCCCTGCCCCGGGACGCGTC
CGTCGCCGTTTTCCTCTTCTGTGGCGGCACCTCGCACAATCTCACCGTGCTCTGTGACTCAACTCGCAAGTATTACACAG
CAGTTCCTGAGAG------------------------------------------------CAAACGTTTCGCCCCCGTG
ACCACCAACGATGTTATGTACAATTACATGAGGAAGGCG---------------GTGGTCGGCGGCGTGTACGCCAATGG
CGGCGGCTGGGCATCGGTGGCGCAGTCTAATGTCATCATGGAGAAATTGTTCAATTTGTCAGAGCAGCTTAAGGTCCATT
TCGTCAAGTTTTTCTCTGTCG------ACCCTCTT------GGTCATCGCGGCGATGTCAGGTGTTTCCTACTGGATTTT
GGTGGAGAAGTCTTTTTCATCACAAAGGCATGGGGACGCGTT---ATGGTTCTCGGCATCGAACCAACGGAGAAACAGAT
GCTCGCGCCTGTGGAGACCGTGGGCAGGTATGCCATCTTCGTCGGCCATCAAAGGTGCCTGGTTGTTGATGCCGCCAAGT
TCCCATCCGTTGAGGCAGACTGCGTCTACTACACTCTAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAGCATCAGT
GATGGGAAAGATGAGAGGGTGTTTGACGCCATCGATTTCGTCAAGGAGAACAAGCGGTTTGTCCCTGTCGGTGCCCGTCC
TTTCACCATCATCCAGCTTCTCTCGAGCTACACCATCAACCTCAGTGATTCTGAACTGGCCTCAAAACAAAGCT-CG-TA
AGGTGCCAACAAATCT----------------------------------------------------------------
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>chr3D_374
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---------------------------------------------------------------------GTCGATGGCGG
CCGCGCCCG---GCGACGAGGTTCCGACGCCTTTGGCGGCCCCTGTTCCTCCGGCCACGGCTGTTGCTGGCTGGTCCTCG
CTACCGACCGACCTCGTGCGCCGCATCGCCGACTG-CCTCCTCGACACCAACGACGTCGACTGCTATGTGGACCTCCGCG
CCGTCTGCCACAACTGGCGCTCCGCCACCGAGGACCCGAGGAGCGACGTCTCCGACCCCCGCTTCCACCCGCGCTTCTGG
ATAGTCCTCGACGACGACGAGGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTGAACACCGCCACTGGCCGCTTCCTCCG
CAAACAGCTCCCGCTGCCCCGCCACTACTACGTGGTCACCACCACTGTCAGCGGCTTCTTCGTCCTGGCCGACAGGAGCC
CAACTCACGCCGCTCGCGTCCTCAACCCTCTCACAGGCGCCG-TGGTCCGTTTCAAGGCCCCGGTGCCCCGGGACACAAC
GGTCGCCGTTTTCTTCTTCTCTGGCAGCACTCTGCACAATCTCACCGTGCTCTGTGACTCAACTGGCAAGTATTACACAG
CAGTTCCTGAGAG------------------------------------------------CAAACGTTTCGCCCCCGAG
ACCACCAACGACGCTATTTACAATTACATGAGGAAGGCG---------------GTGGTCGGCGGCGTGTATGCCAATGG
CGGCGGCTGGGCATCGGTGGCGCAGTCTAATGTCATCATGGAGAAATTGTTCAATTTGTCAGAGCAGCTTAAGGTTCATT
TCTTCAAGTTTTTCTCTGTCG------ACCCTCTT------GGACATCGTGGCGACGTCAGGTGTTTCCTACTGGATTTT
GGTGGAGAAGTCTTTTTCATCACAAAGGCATGGGGACGCGTT---ATGGTTCTCGGCATCGAACCAACGGAGAAACAGAC
GCTTGCGCCTGTGGAGACCGTGGGCAGGTACGCCATCTTCATCGGTCATCAAAGGTGCCTGGTTGTTGATGCCGCCAAGT
TCCCATCCGTTGAGGCAGACTGCGTCTACTACACTCTGGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAGCCTCAGT
GATTGGAAAGATGAGAGGGTGTTTGACGCCATCGATTTCGTCAAGGAGAACAAGCGGTTTGTCCCTGTCGGTGCCCGTCC
TTTCACCATCATCCAGCTTCTCTCGAGCTACACCATCAACATCAGCGATTCTGAACTGGCCTCAAAACAAAGCT--GGTA
AGGTGCCAACAAATCTAGCTGTCTTTTGGGATAGTGATTCCAATGACCGACAATGATATGTCTTTTGTTTTGCCTTGACT
TGTTCCGGGCAA-AATCAGGTTGACTCTAGGAGACTAGTTTAGATCACCTGCGGTAGAATGAACTACTGTAAGCTGCTTA
ATTAGGAGGACATGTTATCAGCCCTTTGCTACATCTATTATGATCGATGCTATCTATTGT--------------------
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>chr3B_374
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---------------------------------------------------------------------GTCGATGGCGG
CCGCGCCCG---GCTATGAGGTTCCGACGCCTTTGGCCGCCCCTGTTCTTCCCTCCATGGCGGCCGCAGGCTGGTCCTCC
CTCCCGAGCGACCTCGTCCTCTGCATCGCCGACTG-CCTCCTCGACACCAACGACGTCGACTGCTATGTGGACCTCCGCG
CCGTCTGCCACAACTGGCGCTCCGCCACCGAGGACCCGAGGAGCGACGCCTCCGACCCCCGCTTCCACCCTCGCTTCTGG
ATAGTCCTCGACGACGACGGCGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTCAACACGGCCACCAGCCGGTTCCTCCG
CAAGCAGCTCCCGCTGCCCCGCCACTACTACGTGGTCACCACCACTGTCAACGGCTTCTTGGTCCTGGACGACAGGAGTC
CACCTCACGCCGCTCGCCTCCTCAACCCTCTCACAGGCGCCG-TGGTCATTTTCAACGCGCCGGTGCCGCGGGACGCGTC
CGTTGCCGTTTTCTTCTCCTCTGGCGGCACTCCGCACAATCTCATCGTGCTCTGCGACTCAACTCGCAAGTATTACAGGG
CTGTTCCGGACAG------------------------------------------------TGAATGTTTCATCGCCGGG
GACATCAATCATGTCTTTTACAATTATATGAGGAAGGTG---------------GTGGTCGGCAGCGTCTACTCCAATGG
TGCTGGCTGCGTATCCGTGGCGCAGTCTAATGTCATCATGGAGTATTTGCTCGATTTGTCGGAGAAGCTTCAGACTGATT
TCGTCAAGTTTTTCTCTGTCG------ACCCTCTT------GGACATCACAACGACGTCCGTTGTTTCCTATTGCATTTT
GGTGGGGAAGTCTTTTTCATCACAATGGCATTAGAACGCGTTGTTGCGGTCCTCATCGTGGATCCAACGGAGAAACAGGC
GCTCACGCCTGTGAAGACCGTGGGCAGATACGCCATCTTCATCAGCCATCAAAGGTGCCTGGTTGTTGATGCCGCTAAGT
TCCCATCCGTCGAGGCAGACTGTGTCTACTACACCCAAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAACATCAGA
GATGGGAAAGACGAGAGGGTGTATGATGACATCAATTTCGTCAAGGAGGACAAGCATTTTGTCTCCTCCGGCCCCCTTCC
TTTCACCATCATCCAGCTTCTCTCGAGCTACACCATCAACCTCAGCGATTCTTAATTGGTCTGATAGCAAATCT-CGGGA
AGGCGCCGACAACTCTACTTTATCTAGTTTATTAACTCGCTCCCTTCCACTACAG----GTCTTTTGTGTTGCCTTGATT
TGTTCCAGGCAGGAAACAAGTTGACTCTAGGAGTGTAGTTTGGATCACCTGTGTTGGAATGAACTACTGTAAGCTGCTTA
ATTAGGACATGGTATCGACCTAA---TGCTACATCCATTGTGATTGATGCTATCTATTGTCTCTGTGTGATCTTGCCTCT
TCCCTTGCATTAGTACTTCCTAGCAATGCAATCTGGTTT--------------------------------------GTT
TGCTGCTGAAATTTTCGCTCAATTTTAGCCCGTTTTCTGTGTTCTCGCTCTGTTGTTCTCCGGTGGCCTTATTAATTCCT
CAAT-TCTTGTTCCAGTGAAGAAACATGTTTTAGAATTGC--TCACTGGTCGTCTGTGGAACATAGCATGAATGCCATGT
CCATATGTAAAGTTTCATCTACTTCTGTGTATGCTTCACCCCCTTATAGTAGCTACTTGCTTTTGTGACACAATGACTTC
TAAGAATTTAAGATGTTGCTTTGCAACTCACTGTTGCTA-----------------------------------------
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CTAAGAGCTTAAGATTTAAGACGCGATTTGGATACGAGGGA-AAAAAGTCTGGCACAATATTGAGTTGCTGTTTTCAAGA
CAGGATTTGTAGATCCAGATGTTCTACTTTCGTGTATACTGCATTCCTGTTCTGAAGTTATCAGGTGTTTTGCCTTGGCT
TGTTCCAGGCAAGAAACAATTTGGCTCTAGGAGTCTACTCCCTCTGTCCCATAATGCAAGACCTTATTACATTTAATATG
TGTGAGTATATTGAATGTAATAAGATCTTCTATTATGGGACGGAGGAAGTAGTTTATATCACCGGCGGTGGAACTACTTC
AAGTTTTCTTAATTTAGGAC--------ATCGTATCAATATAATGCTACATCTACCATGTTTGATGCTATTTTCCATCTG
TGTTCTGTGTTTGCACTTGTTCTTCCCTCTTGCATGATTTCTTAGCAACACAATCTGGTGTTTTTTATTTGCTGTTGAAA
TTTTGGTTCAATTTTTGCCATTTCTGAATTTTCCTC
>chr3D_442
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---------------------------------------------------------TGGCGGGTGCAGACTGGTCCTCT
CTCCCGTGCGACCTCGTCCGCCGCATCGCGGACTC-CTTCCTCGCTAGCAACGACGTGGACTGCTATGTGGACTTGCGCG
CCGTCTGCCACAACTGGCGCTCCGCCACCGACGACCCAAG---CGACGCCTCCGACCCTCGCTTCCGCCCGTGCCGGTGG
ATCATCCTCGACGACGACAAGGCCTTGGAGAGCGACACGCGCCGCCTCTTGGTCAACACCGCCAGCGGCCGGTTCCTCCA
CAGGGAGCTCCCGCTGCTCCGCCACTACTACGTCGTCGCCACCACTCTCAACGGCTTCTTCGTCCTGGCCGACAAGAGCC
CCCCTCACGCCGCTCGCGTCTTCAACCCCCTCACCGGCGCCAATGATCCGTTCCGCGGCGCCCGTGCCGCCCGACGGGGA
GGTCGCTGCTGCCCTGAGGTTTGGCATGGCTTTGCCCATGCTCACCTTAATCTGCGACTCGTTTCGCAAGCATTACGTGG
CCTTTTCTGATTTTGAATGTTTCACCAGCCGTGAGTACAATAATAGCAGTTACCACGCACCTTATAATTTCGCACGCAGG
GCGATCAGAGATGGTTTTGACGGCGCCTTGCCGGGATTAACGGGATTAAGTGAAGTGGTCGACCA---------------
-----------CATCGGTGATT----------------------------------TGATGAGGCTGCATCATGTTCAGC
CTGCTAACTTTTTCTCCAATC------ATCCTCCTGAGACGGGACATGCAGACGATGGCCGGTGTTTCCTTGTGCAATTT
AGCGGACAACTGCTCATCGTCGTCATGGTACAGCGAGTCGTT---AGGGTTCTCAAGTTGGAGGCCACGAGTGACCA---
GCTTGTGTGTTTGAGGACCATCAGCAACCATGACATCTTCATCGGCCATCAAAGGTGCCTGGCTGTCTGTGCTGATAAGT
TCCCATCCGTTGAGGCAAACTGCGTCTACTATACCGAACACATGGGTTCTTTTGCTCGCATCTGCAAATACAACCTCA--
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>chr3B_459
TCCTCGACT-----------------------------------------------------------------------
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-TCCCGAGCGACCTGGTGCGCCGCATCGCCGACTGACCTCCTCGACACCAACCATGTTGATTGTTATGTGGACCTCCGTG
TCGTCTGCCACAACTGGCGCTCCGCCACCGAGGATCCAAGGAGCGACGCCTCCGACCCCCACTTCCACCCGTGCTTCTGG
ATAATCCTTGACGTCGACGGCGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTCAACATCGTCACCGGCCGGTTCCTCCG
CAAGCAACTCCCGCTGCCCCGCCACTACTACGTGGTCACCACCACTGTCAGCGGCTTCTTCGTCTTGGCC----------
----TCACGCCATTCGCGTACTCAACCCTTTCACAGGAGCCG-TGCTCTGTTTCAAGGCGCCCGTGCCTCGGGACACGTC
GGTCGCTGTTTTCTTCTTCTTTGGCGGTATTCTGCACAATCTCACCGTGCTCCATGACTCGACTAGCAAGTATTACACGG
CCGTTCCTGAAAG------------------------------------------------CAAACATTTCGCCCCCGAG
ACCACCAACGATGCTATTTACAATTACATGAGGAACGCC---------------GTGGTCGGCGGCGTGTACACCAATGG
CAGCGGATGGGCAACGGTGGCGCGGTCTAATGTCATCATGGAGAAATTGTTCAATCTGTCGGAGCAGCTTAAGGTTCATT
TCGTCAAGTTTTTCTCTGTCGACCCTCACCCTCTT------GAACATCGCGGCGACGTCAGGTGTTTCCTACTGGATTTT
GGTGGAGAAGTCTTTTTCATCACAAAGGCATGGTGACACGTT---ATGGTTCTCGGCATCGAACCAACGGAGAAACAGAC
GCTGGCGCCTGTGGAGACCGTGGGCAGGTACCCCATCTTTGTCGGTCATCAAAGGTGCCT--------------------
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>chr3B_957
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---------------------------------------------------------------AAAGTTTCGCCCCTGAG
ACCACCAGCAATGCTATTTACAATTACATGAGGAAGGCG---------------GTGGTCGGCGGCGTGTACGCCAATGG
CGGCGGCTGGGCATCGGTGGCGCAGTCTAATGTCATCATGGAGAAATTGTTCAATTTCTCGGAGCAGCTTCAGGTTCATT
TCGTCAAGTTTTTCTCTGTTG------ACCCTCTT------GGACATCGTGGCGACGTCAGGTGTTTCCTACTGGATTTT
GGTGGAGAAGTCTTTTTCATCACAAAGGCATGGGGACGCGTT---ATGGTTCTCGGCATCGAACCAACGGAGAAACAGAC
GCTCGCGCCTGTGGAGACCGTGGGCAGGTATGCCATCTTCATCGGTCATCAAAGGTGCCTGGTTGTTGATGCCGCCATGT
TCCCATCCGTTGAGGCAGACTGCGTCTACTACACTCTAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAGCATCAGT
GATGGGAAAGACGAGAGGGTGTTTGACGCCATCGATTTCGTCAAGGAGAACAAGCGGTTCGTCCCTGTCGGTGCCCGTCC
TTTCACCATCATCCAGCTTCTCTCGAGCTACACCATCAACCTCAGCGATTCTGAACTGG---------------------
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>SNPs
SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S------------------
----------------------------------------------S---------------------------------
------S-------------------------------------------------------------------------
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--------------------------------------------S---------------------------S-------
---------------------------------------------------------------------S---------S
-------------------------------------------------------------S-------S----------
---------------------S----------------------------------------------------------
-S---------------------------------------------------------------------------S--
-----------------------------------------------S---------------------S----------
----------------S---------------------------------------------S-----------------
-----------------------------------S-----------------------------S--------------
------S-------------------------------------------------------------------------
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------------------------------S--S-----------------S-----S----------------------
------------------S-------------------------------------------------------------
-S--------------------------S---------S--------------------S-------S------------
-S-------S--------SS-----------S------------------------------------------------
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--------------------S-------S-S--------S----------------------------------------
------------S--S-----------------S----------------------------------------S-----
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-S------------------------------------------------------------------------------
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---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
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-----------------------------------------------------S--S------------------S---S
--------------S-----------------------------------------------------------------
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--------S-S---S-S---------------------SS--------S--------S-----------------S----
-S----------------------S-----S--------S----------------------------------------
-----SS--------S----------------------------------------------------------------
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---S----------------SSSSSSSS----------------------S----S--------------S----S----
---S--------------------------------------------------------S-------------------
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>forward_41
---------------------CCAGAGGAGAGTGGGGGTAA---------------------------------------
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>reverse_1219
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------------------CTGACCCTCTTGGACATCGC------------------------------------------
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>forward_1151
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-----------TATCGGTGGCGCAGTCTAAA-------------------------------------------------
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>reverse_4171
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----------CAGACTCAAGACGCGCTTTG--------------------------------------------------
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------------------------------------
