>input_sequence_75708
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--------------------------------------------------------------------------ATGAGC
AGCGCGGCGGAGGCATCGGCGGCGAGGGGCGGCGAGGAGGAGAGGTGCCGGTACAAGGGCGTGCGGCGGCGGCGGTGGGG
GAAGTGGGTGTCGGAGATCCGGGTGCCCGGCACGAGGGAGCGGCTGTGGCTGGGCTCCTACGCCACGCCCGAGGCCGCCG
CCGTCGCGCACGACACGGCCGTCTACTTCCTCCGCGGCGGC---------GGCAACGGCGCCGCTGGGCTCAACTTCCCG
GAGCGCGCGGCCGCCGCGTACGGCGCCGGCTGCGTGGCGCCCCTCTCGCCGCGGTCCGTGCAGAGCGTGGCGTCCGACGC
CGGCATGGCCGCCGACGCGCAGCTCGTGGCGGCGCGGGACGGCGCGCCCAGGCAGTGCTACGCGGAGGCGCGCGCCGGCG
CAGGCGCTGCGCAGGGTGGCGCGAACGCGCGGCACGCGGAGTTCCAGCACGACGGCGCGTACGCGTACACATATACGGGG
GACGGCGGGGACACCACTGGCGGC---GGTGG---CAGCAGGGGGCAGCTTGTCTCCGGCGAGCTCAGCGTCGACGACAT
GGAGATATTGATGTAA----------------------------------------------------------------
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>chr3B_1_TraesCS3B01G437900
TCCGGCACCAGCGACCCCTATACCGCACCTGCGAACCCCCTGCTCGTCCTTCCCCCAACGAGCCGCGTCGGCCCCTTCTC
CGGCGAGCCCCCGCAGGGGACACCACATCCTCCTCGTCTCAACCTCGAGCGTTGTCTCCTCTCTATGGCGAAATCGACAA
ACCAATTTATTTAGTTGCCCGAGGTTTACCAAACGCAAAATCGCACGAGTTCTACTAAAGTTACACTTCAAGTAACATAA
TGTCCAACTCAATTTATGTGATCTGATGCAAATTTTATAAAGTTTGAAGTACTTTCGAGTATGAATCCGATGACTTTAGA
TTACTAACTCATATATTGTTGATCAGATTGTTGGTTAGAGATAGATCGTGAAAAGCACAAACGCACGCATGTCTAATATG
TTTTGGACGGAGGAGACACCGTTAGTTTTTTATCATGATTTGTTTTGACTAAAAAAAATCCATCAAATTTTTTATCATGA
AATATACTTCCATAATATTATTATTTTTGAAAAGCTCAAAGATCATATAAAGTGCTAGCACAGACCTTAAAAACGCCATT
TCAAAAATAAAATAAAATACGCATGTGGCATAATTATTTATGTTATAGTACTGACATTTTGGCTAAAAGTCAGTCCCTAA
TTAATACTCCTAACTACTCAGGCCTGTAGACTGCGATGGAGAAGAGGGTTCCCCACAGAATCTGACGGCGACTTGGGGAG
CCTACCACTACGTGCGTGTTCATACGA--------------------------TTGACCCTTTGAAGATTTTGACCCCGT
TGCTCCCATGCCGACCACAAATATCACCACACGGCTGTATTAGTACTGCT---CACAGCTCACAAGGTCAAACGCAAAGC
CGATTCGATCCTTCCGCATGCAGGGTCAACTCGTTTTTTGGGTTGACCTCTCACTGGTATATAAGCGTGTGGTACGTAGT
ACGTTCACTTGGAAGCTCGGCCG-TGCGTTGAGAAAGAGGCGAGGTCAGAGGCTCGGAAGGTGGTCAGAG----ATGAGC
AGCGCGGCGGAGGCATCGGCGGCGAGGGGCGGCGAGGAGGAGAGGTGCCGGTACAAGGGCGTGCGGCGGCGGCGGTGGGG
GAAGTGGGTGTCGGAGATCCGGGTGCCCGGCACGAGGGAGCGGCTGTGGCTGGGCTCCTACGCCACGCCCGAGGCCGCCG
CCGTCGCGCACGACACGGCCGTCTACTTCCTCCGCGGCGGC---------GGCAACGGCGCCGCTGGGCTCAACTTCCCG
GAGCGCGCGGCCGCCGCGTACGGCGCCGGCTGCGTGGCGCCCCTCTCGCCGCGGTCCGTGCAGAGCGTGGCGTCCGACGC
CGGCATGGCCGCCGACGCGCAGCTCGTGGCGGCGCGGGACGGCGCGCCCAGGCAGTGCTACGCGGAGGCGCGCGCCGGCG
CAGGCGCTGCGCAGGGTGGCGCGAACGCGCGGCACGCGGAGTTCCAGCACGACGGCGCGTACGCGTACACATATACGGGG
GACGGCGGGGACACCACTGGCGGC---GGTGG---CAGCAGGGGGCAGCTTGTCTCCGGCGAGCTCAGCGTCGACGACAT
GGAGATATTGATGTAAAATTGAGCATACACCATCACCGGTAGTCCGGTACTACGTAGAATTAGCTGATGCAATAAAGATC
GAACACCGGTCGCAGTTGGCAAGGTTGAGCCATTTGAAATTCGAAAATATTACTTCCGCGCGCACGTTCGATATGGAATG
ATTACTACCTACCTGTTGACATTTGAAATTGGCGAGACATGTAGCCAGCCACTGCGTATGCAGCAGTGAGTGGCGACAGT
GCTC----GTATGCATGGCCACCGGCACGTAGGCGAGGCCCCGCTCGGGTGATCTGATGAATGGCGCTGCGGCCTGCGGG
CAGGCCTAGGTTGACCAGGCTAGCTGGCATGGATCGCTGAGGCTCTCCTTTCTCCAAGGTACGGACGGATGGCGACCGGT
CAATGACCAGCAAACCCTTTTCGCCTGCCTGCCAGTGCCAAGGGAGGATGGGTCAGAGCATAGAGCAAGTTTAGTTTGAT
GTCAAAATT-CCCTTTGCTAATGTTTGGTCAAAGCTAAAAAGTTAGCTATC-----------------------------
--------------------------------ACTTGATGTCAA----------CTTTGTTTGGAAGTTTGGCAATTGCC
AAATGTTGTC-TTGTCAACACATTGGCAGGTCCGCTCGGGGACTCTGGGGCGGTTTGGTTTGAGACTAAGTTTGCCTAAG
GTTGTCATATTTAAGGTTAGACAAATTTGACCAACTTAGATGAGTATTTGCTTCAAGTCACATATTAGGCAAGCCACACC
GGGTTCTCACATCACATACACTCAAAAAAGTGTGTCAAGATTTCCTTAGGCTTAACTTGTGCCTCTCATTTTGAAGAACT
AACCTTAGGTAAGTGTGGCAACATTGTATGGCAAAGTGTGGCATTGTTAGGCCTAGAACCAAACAACCCCTATGTCTGTT
GCGGGTATCAATGGGCCCGGTGTGGCATCGTAGTGTGGGGAGGGCTGCAACTAGTAGAGGCTTATGCGGTCAGCCGGTTC
TGAGTAGTAGAGTGCGCACAAACGGGCGAGAACCTTGCCTTTGGCCCATGGTC
>chr3D_662
GCCTGTA-------------------------------------------------------------------------
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-----------------------------ACTGCGATGGAGAAAAGGGTTCCCCACAGAATCTGATGGCGACTTGGGGAG
CCTACCACCACATGCGTGTTCATACGATCGATACTACGACCATAAAAAATGGTTTGACCCTTTGAAGATTTTGACCCCGT
TGCTCCCATGCCGACCACAAATATCACCACACGGCTGTATTAGTACTGCTGCTCACAGCTCACAAGGTCAAACTCAAAGC
CGATTCGATCCTTCCGCATGCAGGGTCAACTCGTTTTGTGGGTTGACCTCTCACTCGTATATAAGCGCGTGGTACGTGGT
ACGTTCACTTGGAAGCTCGGCCG-TGCGTTGAGAAAGAGGCGAGGTCAGAGGCTCGGAAGGTGGTCAGCCAGCCATGAGC
AGC---GCGGAGGCGTCGGTGGCGAGGGGCGGCGAGGAGGAGCGGTGCCGGTACAAGGGCGTGCGGCGGCGGCGGTGGGG
GAAGTGGGTGTCGGAGATCCGGGTGCCCGGCACGCGGGAGCGCCTGTGGCTGGGCTCCTACGCCACGCCCGAGGCCGCCG
CCGTCGCGCACGACACGGCCGTCTACTTCCTCCGCGGCGGCTCCCTCTCCGGCAACGGCGCCGCTGGGCTCAACTTCCCG
GAGCGTGCGGCCGCCGCGTACGGTGCCGGCTCCGTGGCGCCCCTCTCGCCGCGGTCCGTGCAGAGCGTGGCGTCCGACGC
GGGCATGGCCGCCGACGCGCAGCTCGTGGCGGCGCGGGACGGCGTGCCCAGGCAGCACTACGCGGAGGCGCGCGCCGGCG
CTGGCACCGCGCAGGGCGGCGCGA---------ACGCGGAGCTCCAGCACGACGGCGCGTATGCGTACACGTATACGGGG
GACGGCGGGGACACCACTGGCGGTGGCGGTGGTACCAGTAGGGAGCAGCTTGTCTCCGGGGAGCTCAGCGTCGACGACAT
GGAGATATTGATGTAAAATTGAGCATACACGAACACCGGTA-----GTACTACGTAGAATTAGCTGATGCAATAAAGATC
GAACACAGGTCGCAGTTGGCAAGGTTGAACCGTTTGAAATTCGGAAACAG---TTCCGCGCACACGTCCGATATGAAATG
ATTA----CTACCTGTTGACATTTGAAATTGGCGAGGCATGT----AGCCACTGCGTATGCAGCAGTGAGTGGCGACAGT
GCTC----GTGTGCATGGCCACCGGCACGTAGGCGAAGCCCCGCTTGGGTGAT-TGATGAATGGCGCTGCGGCCG-----
--GGCCCAGGTTGACCAGGCCAGCTGGCATTGAATGCTGAGGCTCTTCTTTCTCTGAGCTGCGGACCGATCGAGACCGGT
CAATGACTAGC-AACCCTTTTCGCCTCCCTGCCAGTGCCAAGGGAGGATGGGTCAGAGCATTGAGCATGCTTAATTTAAT
GTCAAAATTTTCCTTTGCTAATGTTTGGTCAAAGCTAAAAAGTTAGCTATC-----------------------------
--------------------------------ACTTGATGTCAA----------TTTTTTTTTGAAGGTTGGGAATTGCC
AAATGTTGTCCTTGTCAACACATTGTCAGGCCGGCGCGGGGGCT------------------------------------
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>chr3A_662
GCCTGTA-------------------------------------------------------------------------
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-----------------------------ACTGCGATGGAGAAGAGGGTTCCCCACAGAATCTGATGGCGACTTGGGGAG
CCTACCACCACATGCGTGTTCATACGATCGATACTACGACCATAAAAAATGGTTTGACCCTTTGAAGATTTTGACCCCGT
TGCTCCCATGCCGACCACAAATATCACCACACGGCTGTATTAGCACC---GCTCACAGCTCACAAGGTCAAACTCAAACC
CGATTCGATCCTTCCGCATGCAGCGTCAACTCGTTTTGTGGGTTGACCTCTCACTGGTATATAAGCGCGTGGTACGTCGT
ACGTTCATTTGGAAGCTCAACGCATGCGTTGAGAAAGAGGCGAGGTCAGAGGCTCGGAAGGTGGT----CAGCCATGAGC
AGC---GCGGAGGCGTCGGCGGCGAGGGGCGGCGAGGAGGAGCGGTGCCGGTACAAGGGCGTGCGGCGGCGGCGGTGGGG
GAAGTGGGTGTCGGAGATCCGGGTGCCCGGCACGCGGGAGCGCCTGTGGCTCGGCTCCTACGCCACGCCCGAGGCCGCCG
CCGTCGCGCACGACACGGCCGTCTACTTCCTCCGCGGCGGCGCCCTCTCCGGCAACGGCGCCGCTGGGCTCAACTTCCCG
GAGCGCGCGGCCGCCGCGTACGGCGCCGGCTCCGTGGCGCCCCTCTCGCCACGGTCCGTGCAGAGCGTGGCGTCCGACGC
CGGCATGGCCGCCGACGCGCAGCTCGTGGCGGCGCGGGACGGCGCGCCCGGGCAGCACTACGCGGAGGCGCGCGCCGGCG
CAGGCGCCGCGCAGGGCGGCGCGAACGCGCGGCACGCGGAGTTCCAGCACGACGGCGCGTATGCGTACACGTATACCGGG
GACGGCGGGGACACCACTGGCGGCGGTGGTGG---CAGTAGGGAGCAGCTTGTCACCGGCGAGCTCAGCGTCGACGACAT
GGAGATATTGATGTAAAATTGAGTATACATCACACCGG------------TACGTAGAATTAGCTGATGGAATAAAGATC
GAACACCGGTCGCAGTTGGCAAGGTTGAGCCATTTGAAATTCGAAAAATACTTCCGTTGAGTGGCG--------------
----------ACCTGTTGACATTTGAAATTGGCGGGACACGT----AGCCACCGCATATGCTGCGGTGAGTGGCGACAGT
GCTCGATCGTATGCATGGCCACCGGCACGTAGGCGAGGCCCCGCTTGGGTGATCTGATGAATGGCGCTGCGGCCTGCGGG
CAGGCCTAGGTTGACCA---------------------------------------------------------------
---------GC-AGCCCTTTTCGCCTGCCTGCCACTGCCGAGGGAGGATGGGTCAGAGCACAGAGCATGCTTAGTTTGAT
GTCAAAATTTCCCTTTGCTAATGTTTGGTCAAAGCTAAAAAGTTAGCTATTACTCCCTCCATAAAGAAATATAAGAGATC
TAAACGTTCTTATATTTCTTTAGGGAGGGAGTACTTCATGTCAATGTTTTTCTTTTTTGTTTGGAAGTTTGGCAATTGCC
AAATGTTATC-TTGT-----------------------------------------------------------------
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>SNPs
S--S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------S--------------
--------S--S--------------------------------------------------------------------
-------------------------------------------------------------------------S------
-------------------------------------S-----------------------------S---------S--
--------------------------------------------------------------------SS----------
---SSS--------S---------------------------S-------------------------------------
----------------------------------S-------S-------------------------------------
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-------------------------------S------------------------------------------------
-------------------------------------------------------SS-----------------------
-------S--------S--------------------------------------------S--------S---------
--------------------------------------S----S------------------------------------
--------------------------------S--------SSSSS----------------------------------
-----------------------------------------------S-SSSS--------S-----S-------S----
----SSSS----------------------------------SSSS----------------------------------
---------------------------------------------S----------------------------------
--------------------S---------S--SS-----------S-------SS--S-S-----S---S-S-------
-------S---S-------------------------------------------------------S-S----------
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------------------------------------------------------S-------------------------
-------------------------S----S-S--S-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_137
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-------------------------------------CTCAACCTCGAGCGTTGTCT-----------------------
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>reverse_1955
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----------------------------------CGCTGAGGCTCTCCTTTCTC--------------------------
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