>input_sequence_75669
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--------------ATGGCGGCGGCCGCGACCGAGGCGACGATCCTCGAGCTGGACCCTTCGCACGAGCGCGCTGGCCGC
GTCATCGACGACATCGTGCGGCTGGAGAAGAGGATCTTCCCGAAGCACGAGTCGCTGGCGCGCTCGTTCCACGACGAGCT
CAAACGCCGGAACACCGGCCTGATCTACTCGACGTCCGGCGTCGGCGACGACGAGGAGGTCGCCGGGTACGCCATGTACA
CCTGCGCCACCTCCCTCTGCGCCTCCATCACCAAACTCGCCGGTGAGACCCTCGCACTGA-TTTTACCACCCTGCCCAGT
CGAAGCTTT------------------------TGGTCTGAACTCCTGGCCCGTGCGTGCGTGCAGTGAAGGAGAGCTGC
CGGAGGCAGGGCCTGGGCGAGGCGCTGCTGCAGGCCGCCGTGGACAGGTGCCGGAGGCGGCGGGTCCAGCGGGTGTCCCT
CCACGTCGACCCGGCGAGGACGGCCGCGGTAGCGCTTTACCGGAAGGCCGGGTTCCAGGTGGACGCCACCATCGAGGGCT
ACTACTCCGCACAGAGGAATGCTTACCGGATGTACATGGATCTCTAG---------------------------------
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>chr1D_1_TraesCS1D01G167200
AACCAACAGCCTCCCTCGGCACACTCCATGCAATTCTCGTCACAATATATGTAAAGAGAATGTGGTCGCAGTTCTCGTCA
AGACCACACCACACACATTTG-CCATCACCTGGCTCGTGGCT-------CATGATGACCTGGTTACCACTCGATATCCGA
TTTCTTGGCCACCTGCCAAAGAAACATCTTTTTT----GCCAGAATCCAGGCCTGCCAAATTCCTTTGATACCACTCATT
GGAAAAC-AAAAACAATACTTAGCATATAAAACAACATGCTTGCATCTGCACTAGTTATGCTAAAAGAAAATCATAAT-G
ATTTTCCTAAAATGAGATAAGAATGATTTTCCTCAAAAGAAGGTCACAACCAGAGACCATGTTTGAGTGGTTATTTTTGC
GGCAATCAGATAGTCGAATTTTTGTAACAACACGCTTGAGGCC-GAGCTTGCTGCAATCCGGGAAGGAATCTACCTCGCC
TTGAGCTGGACGGAGCTCAACTTCAC------------------------GATCGAGACGATCGAGAAGCTGAGAAAGGA
TCGGTCGATGCATGCACATCACATTA--------TGGAGATTAGATCACTGTCATCGGTTAGAAAAGATTAAGCGTTAAG
GTAATGTAGCCGGTCATAGCATCGCCTCTACGG---GTAGATCGCAAGAACC----------------------------
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-------------------------------------CACTTCTTGTTGGTTGTGTAATACCCCGGAGGAAATCACTAGC
ATTGTGGCTGCTGATTGTCATAACCTTATGCCTTGATCAATAAATATCCTTTCCATGAAAAAAACGGAGAAA---GTCAC
AATGATGAACCAACTGG---------------------------------------------------------------
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--------------------------------------------------------------GATTTTGCAAATTCAACC
ACGAGGTACACATGAACAATGTTCTGAAGTCTCTCAAAAACAAAAAAGTTCACAAGTTGCTTGCCAAAATTACTGATATA
G-------------------------------------------------------------------------------
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----------------------------------------------------TTCTGTCCAAGCAATTTCCCTTTTTGCT
GCTATATAGGTCTACTGATTTTCTAATCGGGGAAGAAGCGGGGGAAAATTGCAAAAGAGAGCTCCACGTTCGGTCCCCCC
ATCCGTGACGAGCTATGGCGGCGGCCGCGACCGAGGCGACGATCCTCGAGCTGGACCCTTCGCACGAGCGCGCTGGCCGC
GTCATCGACGACATCGTGCGGCTGGAGAAGAGGATCTTCCCGAAGCACGAGTCGCTGGCGCGCTCGTTCCACGACGAGCT
CAAACGCCGGAACACCGGCCTGATCTACTCGACGTCCGGCGTCGGCGACGACGAGGAGGTCGCCGGGTACGCCATGTACA
CCTGCGCCACCTCCCTCTGCGCCTCCATCACCAAACTCGCCGGTGAGACCCTCGCACTGA-TTTTACCACCCTGCCCAGT
CGAAGCTTT------------------------TGGTCTGAACTCCTGGCCCGTGCGTGCGTGCAGTGAAGGAGAGCTGC
CGGAGGCAGGGCCTGGGCGAGGCGCTGCTGCAGGCCGCCGTGGACAGGTGCCGGAGGCGGCGGGTCCAGCGGGTGTCCCT
CCACGTCGACCCGGCGAGGACGGCCGCGGTAGCGCTTTACCGGAAGGCCGGGTTCCAGGTGGACGCCACCATCGAGGGCT
ACTACTCCGCACAGAGGAATGCTTACCGGATGTACATGGATCTCTAGAAATCATCAGGATCGGAGCACCAAGGCTTCTTC
ACTTCGCCGATTGTGCTGTTGTTGAGTTCAAATTGTTTTCTTCTTCTAAGTTTACAT-----GAGTTGAGCTTATTTACT
GTGAAATGTCTGCGCTCCAAATTGCCCCAAATAACAGTATCTAGGTAAAAATCTGCGGATGTATTACTCATTTATGATGT
TGCAGTTTCAGACTAACGGATATTACCAAATGCAAATATTGTTGCTGAAGA-----------------------------
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-----------------------------------------GCCAACCTCACTGTTGTATCACTTTGT--CAGCAAGAGA
ATATAATTTAATGCAACTTCTCATTGT-----------------------------------------------------
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---------------------------------TATGTCAATTTCACAAGCATTAATCAGTAGTCCCTCCGATCCATATT
AATTTTCGCAGCTTTG----------------------------------------------------------------
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-----------GTAATATAATTTTATAGCATGGAAATTATAGATGCGAACTGCAAAGAATAATCTTAAGAAACAAGTACC
AGCTTCAGTGCTCAAACCTGAAGACAGTTATACAAAGGGGG-GAAAACATGGGAGGATATCAAACAGCACCGCCTCCATT
TGGGGCAAGCTACAGTTCTCTATTAACAGAGCCATGTGAGATATATACAAACTGGCTGGATATGCTTAGCTTAAGCATGC
AGGTACGCACTAA--ATAAGATCTAAAGCACAAACAAAAAGTTTGCGACTACAAATGCGACAGTTCAGGCACTTCGAAGG
TCTTGGGTACAGGCATGGAAACCAGTGAGCTTGGGAGCTTTGG--GAATAGATTAAATATTTAGGAGCTGGGCACTTGGC
TGAGGACCTTGATAAGGGGAGTGCCGCGCCATTCATTTTATGTGGGAATCATAGACACTGAAGATGACATCAGGCACGAT
CAGAGGGAGCTTGTTTATGTACATGAACAGCCGTCTGAGGTTCTCTCTTGATACCGTCTCCATGTCGACCACGTCATCGT
CCTCGACGTAAATCCACAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCGCGGCAGAATGGGCAGGACTGTGACCTCGAG
TTCCTGCAAT
>chr1A_1
AACCAACAGCCTCCCTCAGCACACTCCATGCAATTCTAGCCACAATACAT---AAGAGAATGTGGTCGCAGTTTTAGTCA
AGGCCACACCACACACA-TTT-CCATCATCTGCCCCGTGCCTGATAAGACATAATAACCTAGTTACCACTCGATATCCGA
TT-CTTGGCCACCTGCCAAAGAAATATGTTTTTT----TTCAGAATCCAGTCCCGCCAAATTCCTTTCATACCACTCATT
GGAAAATAAAAAACAATACTTAGCATATAAAACAACGTG-TTGAATCTGCACCAGTTTTGCTAAAAGAAAATCATAAT-G
A-TTTCCTAAAATGAGATAAGCATGATTTCCCTCAAAAGAAGATCACATGCAGAGACCATGCTTGCGTGGTTATTTTTGC
AGCAATCAGGTCGTCGAGTTTTTGTAACAATACACTTGAGGCC-GAGCTTGCTGCAATCCGGGAAGGAATCTACCTCGCC
TTGAGCTGGACGGAGCTCAACTTCATGGTAAAAAATGATTGTGCTGAACCGATCTAGATGATCGAGAAGCCGAGAAAGGA
CCGGTCGATGCATGCACAATTGCACATCATGTTCTGGAGATTAGATCACTGTTGTCGGTTAGAAAAGGTTAAGCGTGAAG
GTAATGTAGCCGGTCATAGCATTGCCTCTCCGG---GTACATTGCAAGAGCGAATCAACCTGTGGAGTTGGTTAGGTGGA
CAGTGGTATCCCCAACCCACTAAGGTTTAAATCCTGGTGCTTGCATTATTCTTGGATTTATTTCAGGATTTCCGACGATG
CGCTTTCAGTGGGAGGAGACGTTCCCGTCGACGACGAGGCGCCTACGGTAACTTCGTAAATCTCAAGATGATATGCCGGC
TCAGTCTCTCGGAGCTGCTTATATGGGTAGGGTGTGCGTGTGTGCGTTCATAGGGATGAGCGCATGCACATGTATATGAG
CGCTTGTGTCTGTATTGATGCTAAAAAAAAAAGAGCGCACTGCTTGTTGGTTGTGTAATACACCGGAGGAAATCACTAGC
ATCGTGGCTGCCGATTGTCATAACCTTATGCCTTGATGAATAAATATCATTTCCATGAAAAAAATGGAGAAGAAGGTCAC
AATGATGATCCAACTGGTGGGT----------------------------------------------------------
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--------------------------------------------------ACACCTCGCAGGGATTTTGCAAATTCACCC
ACGAGGTACACATGAACAATGTTCTGAAGTTTTTCAAAAACAAAAAAGTTCAGAAGTTGCTTGTCAAAATTACTGATATA
G-------------------------------------------------------------------------------
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----------------------------------------------------T-CTGTCCAAGCAATTACCCTTTTTGGT
GC----TAGGTCTACTGATTTTCTAATCGGGGAAGAAGCAGGGGGGAATTGCAAAAGAGAGCTCCACGTTCGCTCGCCCC
GTCCGTGAAGAGCCATG---------GCGGCCGCGGCCACGATCCTCGAGTTGGACCCTTCACACGAGCGCGCCGGCCGC
GTCATCGACGACATCGTGCGGCTGGAGAAGAGGATCTTCCCGAAGCACGAGTCGCTGGCGCGCTCGTTCCACGACGAGCT
CAAGCGCCGGAACACCGGCCTGATCTACTCGACGTCCGGCGTCGGCGACGACGAGGAGGTCGCCGGCTACGCCATGTACA
CCTGCGCCACCTCCCTCTGCGCCTCCATCACCAAACTCGCCGGTGAGCCTCCCGCACTGACTTTTATCACCCCGCCCGGT
CGAAACTCCGTACTCAGAGTCGCCGCAAGCTTTTGGTCTGAACTTTTGGCGCGTGCGTGCGTGCAGTGAAGGAGAGCTGC
CGGAGGCAGGGCCTCGGCGAGGCGCTCCTGCAGGCCGCCGTCGAGAAGTGCCGGAGGAGGCGGGTCCAGCGGGTGTCCCT
CCACGTCGACCCGGCGAGGACGGCCGCGGTGGCGCTTTACCGGAAGGCCGGGTTCCAGGTGGACGCCACCATCGAGGGCT
ACTACTCCGCACAGAGGAATGCTTACCGGATGTACATGGATCTCTAGAAATCATCAGGATCGGAGCATCAAGGCTTCTTC
ACTCCGCCGATTGTGCTGTTGTTGAGTTCAAATTGTTTTCTTCTTCTTCTGAATTTACATGAGAGTTGAACTTATTTACT
GTGAAATGTCTGCGCTTCAAATGGCCCCAAATAACAGTATCTCGGTAAAAATCTGCGGATGTATTACTCATTTATGATGT
TGCAGTTTCAGACTAACAGACATTACCAAATGCAAATATTGTTGCTAAGGTCCCTCCTAATGTTCCATCCTGTATAGGTG
CTAAGACTGCTATGTAGGCAAAAAAAACTGATGTGACAAGGTAATTAAGACGAGAGAGATGAGGATGGCGATCCAGAAAG
AAACAATGCTAAGCGCGAAAAACCTAGGCAATAGACTTAAATGAAACAATCCCATCAATGAATGAAGAATTTTATTTGCA
AAATTATTAAATGGATGCTTAGCACCAACAAGTTAAGCGCCTATGTATTGGGGGTTTTAGTTGTTAAAGTTTTCAATATG
TTTAGCACTTTATGTAAGTGCCAATGCATTGGAAGTAGTCGGCCAACTTCACTGTAGTATTATCACTTTGCAGCAAGAGA
ATATGATTTAATGCAACTCCTTATTGTTACTCTCTTTTTTTCGATTTATAGGGCTCAATTTAAAAATTTCACAAACCAAG
GTAGATGATGAGTGGTGAAATACTTTTTGTAGTTTGCAAAAGTACCTAACTAATACTCTTGTTTTTCTAAAAAATTATGT
TTATGAATGCATTAATTGCAATGCATGCATGCATAAAGTACATGCATTGATCAATTTTCTCTTAATTCTTACATGCAATG
ATTTAATGCACCTTAGAATCTGAATATGTGATGAGAAACAACCAAATTAAGCCTTATGAAATGGAGAAATTAAAATTTTA
AATAATAAGCCCTATAAACCAGAAAGGAGGGAGTATGTCAATTTCACAAGCATTAATTAGTACTCTCTCCTGTCCATATT
AATTGTCACAGCTTTAGTACTCCCTCCGTCACAGTTTAAAACACAGTTAAATTTGCGTACGTTTTCACAATAAACAATGT
TTAGGGCGCATTGCATTTATTTCTAGTAGCTATTTAGTACTACTTTTATATGCACGCATAGTAAGAATGCTATTTTTTAG
TCCATTTCACAACCAATAGATAAGCAACTAGGTCCTAGAGAATTTTCAAGCGCGCCTTCTAAACCGTGACGGAGGGAGTA
GTACAACTTTAGTAATATAATTTTATAGCATGAAAATTACAGATGCAAACTGCGAAGAAAAATCTTAAGAAACAAGTACC
AGCTTCAGTGCTCAAACCTGAAGACAGTTATACAAAGGGGG-GAA-ACATGGAAGGATATTAAACAGCACCGCCTCCATT
TGGGGCCAGCTACAGTTCTCTATTAACAGAGCCATGTGAGATATATACAAACTGGCTGGATATGCTTAGCTTAAGCATGC
AGGTACGCACTAA--ATAAGATCTAAAGCACAAACAAAAGGTTTGCGACTACAAATGCGACAGTTCAGGCACTTCGAAGG
GCTTGGGTACAGGCATGGAAACCAGAGAGCTTGGGGGAGCTTCCCAAATAGATTAAA-----AGGAGCTGGGCACTTGGC
TGAGGACCTTGATAAGGGGAGTGCCGCACCATTCATTTTATGTGGGAATCGTAGACACTGAAGATGACATCAGGCACGAT
CAGAGGGAGCTTGTTTATGTACATGAACAGCCGTCTGAGGTTCTCTCTTGATACCGTCTCCATGTCGACCACGTCGTCGT
CCTCGACGTAAATCCACAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCGCGGCAGAATGGGCAGGACTGTGACCTCGAG
TTCCTGCAAT
>chr1B_1
AACCAAAAGCCTCCCTCAGCACACTCCATGCAATTCTCGCCATAATACAT---AAGAGAATGTCGTCGTAGTTTTCGTCA
AGTCCGCACCACACACA-TTTGCCATCACCTGGCCCATGCCTCATAAGACATAATGACCTGGTTACCACTCGTTATCCGA
TT-CTTGGTCACCTGCCAAAAAAATATCTTTTTTTTTTGCCAGAATCCAGGCCTGCGAGATTCCTTTGATACCACTCATT
GGAAAAT-AAAAACAATACTTAGCATATAAAACAACGA-----CATTTGCACCGGTTATGCTAAAAGAAAATCATAATAG
A-TTTTCTAAAATGAGATACGAATTATTTCCCTCAAAAGAAGGTCACAAGCAGAGACCATGCTTGAGTGGTTATTTTTGC
AACAATCAGATCGTCAAATTTTTGTAACAATACGCCTCAGGCCTGAGATTGCTGCAATCCGGAAAAGAATCTACCTCGCC
TTGAGCTGGACGGAGCTCAACTTCACGGTAAAAACTGATTGTGCTGAATCGATCTAGATGATCGAGAAGCCGAGAAAGGA
CTGGTCGATGCATGCACGTCACATTT--------TGGAGATTAGATCACTGTTGTCGGTTAGAAAAGGTTAAGCGTGAAG
GTAATGTAGCCGATCATAGCATTGGCTCTACTGGTAGTAGATCGCAAGAACA----------------------------
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-------------------------------------CACTGCTTGTTGGTTGTGTAATGCCCCGGAGGAAATCACTAGC
ATTGTGGCTGCTGATTGTCATAACTTTATGCCTTGATCAATAAATATCCTTTTCATGAAAAAAATGGAGAAG---GTCAC
AATGATGAATCAACTGGCGGACACGCCGTACACCTCGCGGAAGTGGATCCTCTAACATGAAGGAGGAAAATCATCTAAGC
TACAATTCTCTAACTTTCCTCCTTCACTTCCATATGATTAACGCTAAAATGACTTGAATCAATTTGCAAATTATTAATCT
ACTTTATACATTTGCAAAAATTACATACAAACAAATTATGATGTAATAAAATTAATTTTAAATTTATTTACCAACAGTAA
CTGTGTACAATACCTACTTAAATAGATAATACAACGTTCGCTACAGTATCCGTGACTTTTCTTTTTTATTTTACACTAGC
TTGCATTGTAGCTTAGGTGACTTTCCTCCCATGTCAGAGGATCCACTTCCACACCTCGCACGGATTCTGCAAATTCACCC
ACGAGGTACACATGAACAATGTTCTGAAGTTTCTCAAAAACAAAAAAGTTCACAAGTTGCTTGTCAAAATTACTGATATA
CTTCCTTCGTTCCTAAATATAAGTCTTTGGAGAGATTTCACTATAAATCACATACGGATGCATGTAGATGCATTTTAGAG
TGTAGATTCACTCATTTTGCTCCGTATGTAGTCCATAGTGAAATCTCTCCAAAGACTTATATTTAGGTGCTCCATATGTA
GTCCATAGTGAAATCTCTTCAAAGACTTATATTTAGGGACAGAGGGAGTAGTT-CTGTCCAAGCAATTTCCCTTTTTGCT
GCTA--TAGGTCTACTGATTTTCTAATTGGGGAAGAAGCGGGGGCAAATTGCAAAAGAGAGCTCCACGTTCACT---CCC
ATCCGTGACGAGCTATGGCGGCGGCCGCGACCGAAGCGACGATCCTCGAGCTGGACCCTTCGCACGAGCGCGCCGGCCGC
GTTATCGACGACATCGTGCGGCTGGAGAAGAGGATCTTCCCGAAGCACGAGTCGCTGGCGCGCTCGTTCCACGACGAGCT
CAAACGCCGGAACACCGGCCTGATCTACTCGACGTCCGGCGTCGGCGACGACGAGGAGGTCGCTGGGTACGCCATGTACA
CCTGCACCACCTTCCTCTGCGCCTCCATCACCAAACTCGCCGGTGAGACCCTCGCACTGA-TTTTATCACCCTGCCCGGT
CGAAGCTTTAA--------------------TTTGGTCTGAATTCCTGGC----GCGTGCGTGCAGTGAAGGAGAGCTGC
CGGAGGCAGGGCCTGGGCGAGGCGCTGCTGCAGGCCGCCGTGGACAGGTGCCGGAGGAGGCGGGTCCAGCGGGTGTCCCT
CCACGTCGACCCGGCGAGGACGGCCGCGGTGGCGCTTTACCGGAAGGCCGGGTTGCAGGTCGACGCCACCATCGAGGGCT
ACTACTCCGCGCAGAGGAATGCTTACCGGATGTACATGGATCTCTAGAAATCATCAGGATCGGAGCATCAAGGCTTCTTC
ACTTCGCCGGTTGTGCGGTTGTTGAGTTCAAATTGTTTTCTTCTTCTTCTAAATTTACATGAGAGCTGAGCTT-------
-----ATGTCTGCGCTCCAAATGGCCTCGAATAACAGTATCTCA-TAAAAATCTGCGGATGTTTTACTCATTTATGATGT
TGCAGTTTCAGACTAACAGATATTACCCAATGCAAATATTGTTGCTGAAGGGC---------------------------
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-------------CAACTTCTCACTGT-----------------------------------------------------
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---------------------------------TATGTCGATTTCACAGGCATTAACCGATCCAGCTTTG----------
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GTACAACTTTAGCAATATAATTTTATAACATGAACAGTT--GATGCGAACTGCGCAGAATAATCTTAAGGAGCAAGTACC
AGCTTCAGTGCTCAAACCTGAAGACAGTTATACAAAGGGGGGGAA-ACATGGGAGGATATTAAACAGCACCGCCTCCATT
TGGGGCAAGCTACAGTTCTCTATTAACAGAGCCATGTGAGATATATACAAACTGGCTGGATATGCTTAGCTTAAGCATGC
AGGTACGCACTAAATATAAGACCTAAAGCACAAACAAAAGGTTTGCGACTACAAATGCGACAGTTCAGGCATTTCGAAGA
GCTTGAGTACAAGCATGGAAATCAGAGAGCTTGGGAGCTTCGG--AAATAGATTAAA-----AGGAGCTGGGCACTTGGC
TGAGGACTTTGATAA-GGGAGTGCCGCGCCATTCATTTTATGTGGGAATCATAGACACTGAAGATGACATCAGGCACGAT
CAGAGGGAGCTTGTTTATGTACATGAACAGCCGTCTGAGGTTCTCTCTTGATACCGTCTCCATGTCGACCACGTCATCGT
CCTCGACGTAAATCCACAAGTCACCAGGGTCAGTCTTCTTCAAGTTGTCGCGGCAGAATGGGCAGGACTGTGACCTCGAG
TTCCTGCAAT
>SNPs
-----------------S---------------------S-------S--SSS--------------------S------
--S--------------S--S-------------S----S------------S---------------------------
--S---------------------S-------------------------------------------------------
------S-----------------------------S--S------------S---------------------------
-S---------------------------S-------------------S-----------S------------------
S----------S------------------S-------------------------------------------------
------------------------------------------------------S---S-----------S---------
S---------------------------------------------------SS-------------S--------S---
----------------------S----------------------------S----------------------------
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-----------------------------------------S--------------------------------------
----------------------------------------------------------------S------S--------
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-----------------------------------------------------------------------------S--
------------------------------S--------------------------------S----------------
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-----------------------------------------------------S--------------------------
----SS--------------------------------------S---------------------------S--S----
-------------------------------------------------------------------------S------
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------------------------------------------------------------------S----------S--
--------------------------------------------------S-----------------------------
---------------------------------------------------------S----------------------
------------------------------S-------------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------------SSSSSSSSSS-----------------------
----------------------S-------------------S-------------------------------------
-----------------S--------------------------------S-----------------------------
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-----------------------------------------------S-------S----S-SSSSS-------------
----S---------------------------------------------------------------------------
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--------------------------------------------------------------S-------SS--------
----S--S-------S----------------------------------------------------------------
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--------------------------------S------S-------------S--------------------------
---------------------------------------------S--------------S-------------------
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---------------------------------------S----------------------------------------
S------------------------S-------------------S-----------SSSSS------------------
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>forward_1913
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-----------------------------------------------------AAAGAGAGCTCCACGTTCGG-------
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>reverse_4140
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-----------------------------------------------------------TTTAGGAGCTGGGCACTTGG-
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