>input_sequence_75654
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-GC--ATATATATCAACCCAAGC-GCGAGAGATTACAAGTACGTGCGCCGCAC----ATCGTCGTCGCCTTCATTCCACC
GGTCACCACAGCGA---------GCATCAGCCGCGA----TGGCGTCGGCTGGCGAGGGGACGGGCATCATCATCCACGC
GCGGCCGCTGCAGGACGCGGCGTCGGCCGGCGGCGGCGGCGGG---GGGTCGTACACGGCGGTGTTCGTGGTGCTGGGCG
TGATCGCGGCGCTGATCGTCATCTCCTGCCTCGTCGGCCAGGTGTGCACCAAGAGGCACCTGCGCGCGCGCCCGCACAGG
GACCGCGTCGCCTACTACGACGACGACCTCGAGGGCGGCGGGTACGGCCACGGCCACGGCGTCGCCAAGATGGAGGCTGC
CGCGCCGGCCACGGTGACCGCGGTGGTGCCGGCCGCGGCGTCCGTGGCGTCCGTGGAGATGCGGCAGGTGGCTTGACGGC
GCCAGAGAGCG-------------CGGTGCAGGAAGGGAAGCCGGCGTAGCATGGCATGGCATGGAATGATTTGGTTGAG
ACGCGTGTGTACGTACGCAGTCTTGTTCATGTGAACTCCCGTGTGA----------------------------------
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>chr1A_1_TraesCS1A01G406400
AGCTTCTTGGGGAGGCCCTCGATGAGGTCCTTGGCGTCCTTGAGCGCCAGGTTGGTCAGCGCGCGCACCACCTTGATGGT
CGCGATGCGGGCGCTGCTCGGCACCTCCTCGATCACCACGTCGAACTCCGTCTGCTCCGCGGGCGCCTCGGCCTCGGCCG
CCGGTCCGGACGGGGCGGCCACGGCGGCGGCGGGCGCGAACGCGGCCGCCGACACGCCCAGGCGCTCCTGCAGGTGGTCC
ACCAGCCCGCGCGCCTCCTCCAGGGTCAGCCCCGCGATGGCGTCCCCCAGCTCCAGCACCTTCGGGGAGGCCGCGGCGGT
TGAGGTGCAAGCGACGGCGACGGAGGGGCGGTGACCGTGGATGGG---GAAGAATGGGTGTGGCCGGGGCAGGGAGGTGG
TGGCGGGCTTGGCGTGGAGGAGGGAGAGGGCCGAGGAGAGAGCGGTGGAAGCCATTGCCGCCGTGGCGCTGAGTCTTTCT
T-GATGCTCTGCTCTGCTCTGC--------GCTCGGAGTTGGAAATGGCAGAGGGGAAGAAAAGAGGCGCGCGAAGATAA
GATAAGAAGGTGTGTCATCACGTAGGAAACGAATGTGACGTGCGTTAGCCACGACAGCTGCACATTTCTGACCGTCGGAT
CGGCAATGGACGGTGATCAGAATGCTTATAGTTTGTTCAAGAATCCATTCATGCAGAAAGAATCGATCCATGCAAAAGGA
AGAAGATGACATCCATACATCAATCTAGC---------------------ATCCCAGCTAATAGCATCCAAAAAAAGAAT
CTTGCAAGGGTAACTTGCGAGACTGCAATTGATCGACGCCCTGCATATTGTTTGTTCCCTTGGAATGATGGAAGGAATAC
GGTGAGTGGCAACCAACGTTGGATTGGA-----TTGGATGGATCCTTAGCTTTGCCATGGATGCCGGCAAGGAACA---A
CACAGCATAAATTGCAGAGTTCGCAAGCTCCAATCCTCCCCTTGTACACTAGACCAAACCCAGCTCTCGAGCTCACTCCA
AGC--ATATATATCAACCCAAGC-GCGAGAGATTACAAGTACGTGCGCCGCAC----ATCGTCGTCGCCTTCATTCCACC
GGTCACCACAGCGA---------GCATCAGCCGCGA----TGGCGTCGGCTGGCGAGGGGACGGGCATCATCATCCACGC
GCGGCCGCTGCAGGACGCGGCGTCGGCCGGCGGCGGCGGCGGG---GGGTCGTACACGGCGGTGTTCGTGGTGCTGGGCG
TGATCGCGGCGCTGATCGTCATCTCCTGCCTCGTCGGCCAGGTGTGCACCAAGAGGCACCTGCGCGCGCGCCCGCACAGG
GACCGCGTCGCCTACTACGACGACGACCTCGAGGGCGGCGGGTACGGCCACGGCCACGGCGTCGCCAAGATGGAGGCTGC
CGCGCCGGCCACGGTGACCGCGGTGGTGCCGGCCGCGGCGTCCGTGGCGTCCGTGGAGATGCGGCAGGTGGCTTGACGGC
GCCAGAGAGCG-------------CGGTGCAGGAAGGGAAGCCGGCGTAGCATGGCATGGCATGGAATGATTTGGTTGAG
ACGCGTGTGTACGTACGCAGTCTTGTTCATGTGAACTCCCGTGTGAATAGAACGTGTCTCCATAGCCACGACTGTAAATA
TGAAATTTGTTGTGATTGTGATTATATATAGACGTGAAGTACTCCCTTCCTCTAAAAA-TACTTGTCTCAAACGAATGTA
TTTCGGTTACAGATTTAAATCCCCAAAAGTGTACAACTAAGGGGGTGTTTGTTTCCAGTGACTTTTTTGTGTAGGGACTA
GAAAAAATCCTTCTTAGAAACTTTTTTACCAAACGGGAGGGACTTTTTAGGGACTAAACTAGACATTTGGGACTAAATGG
AGAAGACTCTCAAGGAGAGTCTTTTTGGGACTTTTTGGGACTTTTCCAACAATGCCCCTCCATGCACCCATTGGCCCGCC
ACCCCATGGTGTTATTTGATTGTTATTTTTCTATATACTAGGGGCAACATGGTCATTTAATAACCTCTAGGAAGGGACTA
GGGACTTTCTAGTCTCTGGAAACAAACAATGAGGGACTTTTTAAGGACTAGAAACTTTTTAGTTGGAACTAGAAAAAGTC
CTAAAACTTATGAACCAAACAGGGCCTAAATTTTAAATTCTTAGTATTGAGGCAGCAGAACTGCAGAAATATACGTATAT
TGCAGTGGGTCTGGTAGGAGCTAGAATCCTACCTGGTGTAGGGCGTAGGTTGTACGGGAAGGGGGAGGGTTGACGGAGAT
GCGATCACGGCTACCGCCGGCGGGGCGCCATGGCGCGATGAAGAAGAGGCGGCGGCGGCGCAAGAGGCGGCTAGGGTTAG
TTCTCCCGGCTTTCTTCGGGAAGCCGAGCAAATAATGATTGCTTCTTGCTTGATTAGATTGATACATCTCCTCTCCTTAT
ATAGAGAGGTTTACTTGACTCCTAAGCAAACGATCCTAATAATGATAAGATAATTGGGCTAAGCCCCTAATAACGATAAG
ATAACTTGGGCCATAACCCACTGGGCTAAGCCCCTAATATGTCGGTCATAACACTTCTCCCCGCCTGCACAAACAGCTCG
TCCTCGA
>chr1D_1
AGCTTCTTGGGGAGGCCCTCGATGAGGTCCTTGGCGTCCTTGAGCGCCAGGTTGGTCAGCGCGCGCACCACCTTGATGGT
GGCGATGCGGGCGCTGCTCGGCACCTCCTCGATCACCACGTCGAACTCCGTCTGCTCCGCGGGCGCCTCGGCCTCGGCCG
CCGCTCCGGCCGGGGCGGCCACGGCGGCGGCGGGGGCGAACGCGGCCGCCGACACGCCCAGGCGCTCCTGCAGGTGGTCC
ACCAGCCCGCGCGCCTCCTCCAGGGTCAGCCCCGCGATGGCGTCCCCCAGCTCCAGCACCTTCGGGGAGGCCGCGGCGGT
TGAGGTGCAAGCGACGGCGACGGAGGGGCGGCGACCGTGGATGGG---GAAGAATGGGTGTGGTCGGGGCAGGGAGGTGG
TGGCGGGCTTGGCGTGGAGGAGGGAGAGGGCCGAGGAGAGAGCGGTGGAAGCCATG---GCCATGGCGCTGAGTGTTTCT
CGGA----------TGCTCTGCTCTCCCTGGCTCGGAGTTGGCGACGGCAGAGGGGAAGAAAAGAGGCGCGCGAGGATAA
GATAAGAAGATGTGTCA---CGTAGGAAACGAATGTGACGTGCGTTAGCCACGACAGCTGCACATTTCTGGCCGTTGGAT
AGCTGATGGACGGTGATCAGAATGTTTATAGTTTGTTCAAGAATCCATTCATGCAGAAAGAATCGATTCACGCAAAAGGA
GGAAGATGACATCCATCCATCCATCCATCGATGTAGCACTGAGAAACAAAACCCCAGCTAAGAGCATCCCAAAAAAGAAT
CTTGCAAGGGTAACTTGCGAGACTGCAATTGATCGGACACTT--------------------------TGGAAGGAATAC
GGTGAGTGGCAAACAACGTTGGATTG----------GATGGATCCTTAGCTTTGCCATGGATGCCGGCAAGGAACAGCAT
---AGCATAAATTGCAGAGTTCGCAAGCTCCAATCCTCCCCTTGTACACTAGACCAAACCCAGCCCTCGAGCTCACTCCA
AGCATATATATATCAACCCAAGCCGCGAGAAATTACAAGTACG---------C----ATCGTCGTCGCCTTCATTCCACC
GGTCACCACCGCGAAGCAAGCGAGCATCAGCGGCGA----TGGCGTCGGCTGGCGAGGGGACGGGCATCATCATCCACGC
GCGGCCGCTGCAGGACGCGGCGTCGGCTGGCGCCAGCGGCGGG---GGTTCGTACACGGCGGTGTTCGTGGTGCTGGGCG
TCATCGCGGCGCTCATCGTCATCTCCTGCCTCGTCGGCCAGGTGTGCACCAAGAGGCACCTCCGCGCGCGCCCGCGCAGG
GACCGCGTCGCCTACTACGACGACGACCTCGAGGGCGGCGGGTACGGCCACGGCCACGGCGTCGCCAAGATGGAGGCCGC
CGCGCCGGCCACGGTGACCGCGGTGGTGCCGGCCGCGGCGTCCGT---------GGAGATGAGGCAGGTGGCTTGACTTA
GCCAGAGAGCGCGGTGCAGGAAGCCGGCG-----------------------TGGCATGGCATGTCATGATTTGGTTGCG
C-----------------------GTACAGGTGAACTCCCGTGTGTATAGAACGTGTCTCCATAGCCACGACTGTAAATA
TGAAATTTGTTGTGATTGTGATTATATATAGACCTGAAGTACTCCCTTCGTCTGAAAA-TACTTG---------AATGTA
TTTGGATTACAGATTTAAATCCCAATAAGTGTACAA--------------------------------------------
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-------------------------CTAAATTTTAAATTCTTAGTATTGAGGTAGAAGAACTGCAGAAATATACGTATAT
TGCAGTGGGT----------------------------------------------------------------------
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>chr1B_1
AGCTTCTTGGGGAGGCCCTCGATGAGGTCCTTGGCGTCCTTGAGCGCCAGGTTGGTCAGCGCGCGCACCACCTTGATGGT
GGCGATGCGGGCGCTGCTCGGCACCTCCTCGATCACCACGTCGAACTCCGTCTGCTCCGCGGGCGCCTCGGCCTCGGCCG
CCGGTCCGGCCGGCGCGGCCACGGCGGCGGCGGGCGCGAACGCGGCCGCCGACACGCCCAGGCGCTCCTGCAGGTGGTCC
ACCAGCCCGCGCGCCTCCTCCAGGGTCAGCCCCGCGATGGCGTCCCCCAGCTCCAGCACCTTCGGGGAGGCCGCCGCGGT
TGAGGTGCAGGCGACGGCGACGGAGGGGCGGCGACCGTGCATGGGGACGAAGAATGGGTGTGGCCGGGGCAGGGAGGTGG
CGGCGGGCTTGGCGTGGAGGAGGGTGAAGGCCGATGAGAGGGCGGTGGAAGCCATG---GCCATGGCGATGAGTGCTTCT
CGGATGCTATGCTCTGCTCTGCTCTCCCTGGCTCGGAGGTGGCAACGGCAGAGGGGAAGAAAAGAGGCGCGCGAAGATAA
GATAAGAAGATGTGTCA---CGTAGGAAACGAATGTGACGTGCGTTAGCCACGACAGCTGCACGTTTCTGACCGTCGGAT
CGGCGATGGACGGTGATCGG------------------------CCATTCATGCAGACAGAATCGATCCATGCAAAAGGA
GGAAGATGACACCCATCCATCAATCCAGC---------------------ACCCCAGCTAAGAGCATCCCAAAAAAGAAT
CTTGCAAGGTAAACTTGCGAGACTGCAATTGATCGGACACTT--------------------------TGGAAGGAATAC
GGTGAGTGGCAACCAACGTTGGATTGGATTGGATTGGATGGATCCTTAGCTTTGCCATGGACGCCGGCAAGGAACAACAA
CACAGCATAAATTGCAGAGTTCGCAAGCTCCAATCCTCCCCTTGCACACCAGACCAAAACCAGCCCTCAACCTCACTCCA
AGC--ATATATATCAACCCAAGCCGCGAGAAATTACAAGTACGTGCGCCGCACATCGATCGTCGTCGCCTTCATTCCACC
G----------CGAAGCAAGCGAGTATCAGCAGCGAGCGATGGCGTCGGCTGGCGAGGGGACGGGCATCATCATCCACGC
GCGGCCGCTGCAGGACGCGGCGTCGGCCGGCGCCGGCGGCGGGGGCGGGTCGTACACGGCGGTGTTCGTGGTGCTGGGCG
TCATCGCGGCGCTCATCGTCATCTCCTGCCTCGTCGGCCAGGTGTGCACAAAGAGGCACCTGCGTCCGCGCCCGCGCAGG
GACCGCGTCGCCTACTACGACGACGACCTCGAGGGCGGCGGGTACGGCCACGGCCACGGCGTCGCCAAGATGGAGGCCGC
CGCGCCGGCCACGGTGACCGCGGTGGTGCCGGCCGCGGCGTCCGT---------GGAGATGCGGCAGGTGGCTTGACGGC
GCCAGAGAGCG-------------CGGCG-----------------------TGGCATGGCATGTCATGATTTGGTTGCG
ACGCGTGTGTACGTACGTAGTCTTGTTCATGTGAACTCCCGTGTGAATAGAACGTGTCTCCATAGCCACGACTGTAAATA
TGAAATTTGTTGTGATTGTGATTATGTATAGATGTGAAGTACTCCCTCCGTCAAAAAAGTACTTCTCTCAAACGGATGTA
TCAAGATTACAGATTTAAATCCCAAAAATGTA------------------------------------------------
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>SNPs
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S-------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
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-------------------------------S------------------------------------------------
-------------------------------------------------------SSSS---S-----------S-----
S-------S---------------------------------S--S----------------------------------
---------S-------SSS------------------------------------------------------------
----S-------------------S-------------------------------------------------------
S---------------S--------S-------------------------S---------S-------S----------
-----------------------------------SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSS------------
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----------------------------------------------------------------S---------------
------------------------------S-------------------------------------------------
---------S---------------------S------------------------------------------------
--------------------------------S-----------------------------------------------
-S-----------S-------------------------------------------------------------S----
-----------------------------------------------------------------------------S--
---------------------------------------------SSSSSSSSS--------------------------
---------------------------S-SSSSSSSSSSSSSSSSSSSSSSS------------SS------------S-
-----------------S--------------------------------------------------------------
-------------------------------------------------S------------------------------
---S-S-----------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------------------------S--S------------------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_851
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-------------------------------ATCGACGCCCTGCATATTGT-----------------------------
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>reverse_2399
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------------------------------------------------------------------------------AG
TTCTCCCGGCTTTCTTCG--------------------------------------------------------------
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