>input_sequence_75630
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---------------------------------------------------------------------ATGGCCAAGGG
AGCGGTGATGCTTCTTGTGCTATTCA---CGGTGCTGTCGGCGGTGAGCGAAGCCCAGCTGCAGCACCGGGCCGGTCACA
GGACCTTGTCCCACGGGCATCGCCGGTCCGCCGACCCAGCGGCGCCGACACATCTCCACTTCTTCTTCCACGACACCGTG
AGCGGCGCGTCTCCGTCGGCGGTGCGGGTGGTGGGTCCGGCCGACCCGTCATCGCGGACCTTCTTCGGGATGGTGAACGT
GATGGACGACCCGCTGACCGAGGGCCCGGAGCCCGACTCGGCGGCCGTCGGCCGCGCCCAGGGCCTGTACATGGGGGCGG
ACCAGGCGGAGCTGGGCTTCCTGCAGACCATGAACCTCGTGCTCACCTCCGGCCCCTACAACGGCAGCACGCTCGCCGTG
CTCGGACGCAACTGCCCGCTCACCGACGTCCGCGAGATGCCCGTCGTCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGG
GTACGCGCAGGCCCGGACCCACTGGCTCGACTTCAAGACTGGCGACGCCACCGTCGAATACGACGTCTACGTCATGCACT
AG------------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G504300
AGTTTGCCAAGGTATGAAAATGGACTCCGCCGATGAGTTCTTTTTCCGCAATTTCCTTTACGACTCCGACGATTCGTCGT
CCGACTACGAGGAGGAGATATTGGCTGCCGTGTTGGTCCATCACCACCTCCACAGCCAGCGGCCGTTGTTCCGTGGCTCC
ATTCCGGGCCACCTTCCGGCGTTGAATCGCAACCGAGAGAGCGAGCATTTCCTTCTTTGGAAGGAATACTTTGATACAAC
AAACCCGTTGTTCAAATATCAAAAAATCTGCTGTCGTTTCCGTATGAGTAGGCATCTTTTTCAACCGTATTAGAGAGGGG
GTGGTCGGCTATGATGACTATTTTGAGTGCAATATATGTATCTTCTTTTATTCGTTTGCAAAACTATGTGAAACATTTTT
ATTTGTATCCGGCTTGTAAAACTATAATATTTTATTCGGTAAACTATGTTATTTGACATTATGTTTGGAATGCAAATCAA
TGTAATATTGGGCGGCCAGCCGGCCACGCCGCACATATGGGTCGGCGCGTTGGGCGCGCTGCCGACCCAAATCTAAAAGA
GGGCAGACGCCGGGCGGGCGGCCGATCCAAACAGACAAAAAGCGAACGAAATCGCCGTCCGTTTAGGTCGGCCCGTTGGA
GTTGCTCTAATTTCACCACGGACAACAAAAGTACGGTGATCCAGCTCCACTCACAACATTCCTCCAAAACCACAAAGTCC
ACAATCTAAAACCTACAAGCAACATCATAACCGCTGATCCTCTGCATAGTGCTCCCCGGGTCAGGTGCCTATCACCACTG
GCCAAGCAAAGT---ATTGTCCATGTTGCCCAACCACTGTCCACTCCACTTCATAGAGCAGCTTTCTGGATCGCCAATTG
GAGCCCACCACGTGTCGCTGATGTT-CCTTTACACTCCCTCCATCCCACTATAAATGACAGGTGAGGTACACTTGAAAGA
TCGCACAAAGTCACAGACACTCACTGAAGCACC-------------------------TAGCTCAAGAAATGGCCAAGGG
AGCGGTGATGCTTCTTGTGCTATTCA---CGGTGCTGTCGGCGGTGAGCGAAGCCCAGCTGCAGCACCGGGCCGGTCACA
GGACCTTGTCCCACGGGCATCGCCGGTCCGCCGACCCAGCGGCGCCGACACATCTCCACTTCTTCTTCCACGACACCGTG
AGCGGCGCGTCTCCGTCGGCGGTGCGGGTGGTGGGTCCGGCCGACCCGTCATCGCGGACCTTCTTCGGGATGGTGAACGT
GATGGACGACCCGCTGACCGAGGGCCCGGAGCCCGACTCGGCGGCCGTCGGCCGCGCCCAGGGCCTGTACATGGGGGCGG
ACCAGGCGGAGCTGGGCTTCCTGCAGACCATGAACCTCGTGCTCACCTCCGGCCCCTACAACGGCAGCACGCTCGCCGTG
CTCGGACGCAACTGCCCGCTCACCGACGTCCGCGAGATGCCCGTCGTCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGG
GTACGCGCAGGCCCGGACCCACTGGCTCGACTTCAAGACTGGCGACGCCACCGTCGAATACGACGTCTACGTCATGCACT
AGCATGAAAATGCTTCAAAGGCTTTTATTTTCCTCGTTTGTTTACTTCCGGTTATGCTTTGCTTTGAGATTTGGGCGTTT
TCTT----TGTCCTAAATATCGGTGCCTTTTTTTTTGGGTTAACTGCCTGTCAAGTTGCAAGAATAAGTGGCCCTATGTG
AAACAGTGAAAGGCGTATACTTTTT----TTATTATTGAAACTTTTCTATCGTAC----------TTTTTTTTTTGCTCG
AGAGATGCAAAAGCCTTGCATTTTGAAATTTTGATGCATTGATGTGTAAGATCAAAGACACAAATTTGCAGGGGCACGCA
CCTGCCAAGGCCTGCCCGGCCGCTCGATTATCTTGCGATTCACGAAGTAGTTGGATCCCGCACGAGGGCACGGTAAGTTT
TGAGTTTCAGTCATTGAAACTTACGATTTTTCATCCGAACTTTGAGATTTTCTCGCTCTCTTTTACCAAGTTTCATAGAT
AAATTTTGAAGACATTTTTTTCTCG-GTTGCAGGCACAAATATCATGATTTTATCAGTCGCTCGTACTAAGTTTTAAGAG
TTGAAATTTGACGTTCATTTTCATAATTCATCAAATATATTT---AAATTGGATCTTATTTGAGAATCCTCGTCAGTCCT
CACGAGAAACGCGAATACGAAAACAAAACTTAATTAGGACTTTTCTTTC-AAAGATATAAAAGTTTAAAAATCGGAAGCC
AAAAATAAGAGCACGCACGAGGGACTACGTGGCATGAGACCTGCGTGCCACAAATCCTCGTCGAGATCAAACAAAGGTAA
TGTCCAATGGTTACAACATGACTTCTCTAACCAGTAGACACTGCCATCGCCAAAAGCAACATCGCGAGGCCTCTTGATTG
CCTTGTCATTGTTTGTTCAGAAACTAATAATTTCCAATTATTATGGAGAAACCGACTTCTTACAGAT---TAGCTCACTG
CGCTCTTCGTTTCACAATGTAGTGTATATTTTGGAGAAAAATGCTTATATGGTCCTTAAACTTGGCGG
>chr5B_648
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-------TAATTTCACCACCGACAACAGAAATCTGGTGATCCTCCACCGCT---AACATTCCTCCAAAACCACAA-----
----TCTAAAATATACAACCAACATCATGACCGCTGATCCTCTGCACTGTGCTCCCCGGATCTGGTGCCTATCACCATTG
GCCAAGCAAAGTATTCTTGTCCATGTTGCCCTACCACTGTCCACTCCACTTCATAGAGCAGCTTTCTCGATCGCCAATTA
GAGCCCACCACGTGCCGCTTATGTT-CCTTTACACTCCCTCCATCCCACTATAAATGGCAGGTGAGGTACACTTGAAAGA
TCGCACAAAGTCACAGACACTTACTTAT-----------------------------TTAGCTCAAGAAATGGCCAAGGG
AACGGTGATGCTTCTTGTGCTCCTCA---CGGTGCTGTCAGCAGTGAGCGAAGCCCAGCAGCAGCACCGGCCCGGCCACC
GGACCTTGTCCCACGGGCATCGCCGGTCCGCCGACCCAGCGGCGCCGACACACCTCCACTTCTTCTTCCACGACACCGTG
AGCGGCTCGTCTCCGTCGGCGGTGCGGGTGGTGGGTCCGGCGGACCCGTCGTCGCGAACCTTCTTCGGGATGGTGAACGT
GATGGATGACCCGCTGACCGAGGGCCCGGAGCCCGGCTCGGCGGCCGTCGGCCGCGCCCAGGGCCTGTACATGGGGGCGG
ACCAGGCGGAGCTGGGCTTCCTGCAGACCATGAACCTCGTGCTCACCTCCGGCCCCTACAACGGCAGCACGCTCGCCGTG
CTCGGCCGCAACTGCCCGCTCACCGACGTCCGCGAGATGCCCGTCGTCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGG
GTACGCGCAGGCCCGCACCCACTGGCTCGACTTCAAGACCGGCGACGCCACCGTCGAATACGACGTCTACGTCATGCACT
AGCATGGAAATGCTTTGAGGGCTTTTATTTACTTTCGGCCA------------------TGCTTTGAGATTTGGGTGTTC
TTTTCTTGTGTCCTAAATATCGGTGCCTTTAAC-TTGGGTTAATTGTCTGGCAAGTTGCAAGAATAAAGGGACCTATGTG
AAACAGCGAAAGGCGTATACTTTTTCTTATTATTAGTTAAACTTTTTTTTTCA---------------TCTTTTTGCTCG
AGAGATGCAAAAGCCTTGTATTTTGAACTTTTGATGAATTGATGTGTAAGATCAAAGACGCAAATTCGCGGGGGCACACA
CCTGCAAGC-CCTGCCCGGCCGCTCGATTACCTCGCGATTCCCGAAGTAGTTGGATCCCGTAGGTGGGCATACTAAGTTC
TAAGTTTCACTCGTTGAAATGTACGATTTTTCATCTCAAACTTACGATTTTCTCGCACGCCTTTACAAAGTTTCATAGAT
AAATTTTTATGACATTTCTTTTGTCAGTTACATGCACAAATATCGTGATTTCATCGGTCGCACGTACTAAGTTTCAAAAG
TGGAAACTTAACACTTATTTTCAAGATTTGTCAAAAATTATTAAAAAAATGGATCTTATTTGAAAGTCCTCGTCAA----
---GAGAAACACGAATACGAAAAGAAAACTTAATTTGAACTTTTCGTTCAAAAAATATATAAGTTCGAAAATCAGAATCC
AAAAATAAAAGCATGCCTGAGGGACTGCATGCTGTGAGACCTGCGAGCCACACATCCTCGTCCAGATCAAAGAAGGGTAA
CGTCCGATGGTTACAACACGGCTTCTCTTGCCGGTAGACACTGACATCGCCTAAAGCAATGTCGCAAGGCCTCTCGATTG
CCTTGTCATTGTTTGTTCAGAAACTAATAATTTC-AAATATTATGGAGAAACCGACTTCTTACAGATCATTAGCTCACTA
CTATCTTCATTTCACAATGTAGTGTATATTTTGAAGTAAAATACACGTATGGTCCTTGAACTTGG---
>chr4A_650
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---------ATTTCACCACCGACAACAGAAATATGGTGATCCAGCTCCACTCACAACATTCCTCCAAAACCACAA-GTCC
ACAATCTAAAATCTACAAGCAAAATCATAGCCGGTGATCCTCTGCATTGTGCTCCCCGGGTCAGGTGCCTATCACCATTG
GCCAAGCAAAGTATCATTGTCCATGTTGCCCTACCACTGTCCACTCCACTTCATGGAGCAGCCTT-------GCCAATTA
GAGCCTGCCACTTGCCGCTTATGTTCCCTTTACACTCCCTCCATCCCACTATAAATAGCTGGTGAGCTGCACTTGAAAGA
TCGCACAAAGACACAGACACTCACGTAAGCATCTACGGAGTAGCACACATTACTTGCTTAGCTCAAGAAATGGCCAAGGG
AGCGGTGATGCTTCTTGTGCTCTTCA---CGGTGCTGTCAGCGGTGAGCCAAGCCCAGCTGCAGCACGGGCCCGGCCACA
GGACCTTGTCCCACGGGCACCGCCGGTCCGCCGACCGAGCGGCGCCGACGCACCTCCACTTCTTCTTCCACGACACCGTG
AGCGGCGCGTCCCCGTCGGCGGTGCGGGTGGTGGGTCCGGCCGACCCGTCGTCGCGGACCTTCTTCGGGATGGTGAACGT
GATGGACGACCCGCTGACCGAGGGCCCGGATCCCGGCTCGGCGGCCGTCGGCCGCGCCCAGGGCCTGTACATGGGGGCGG
ACCAGGCCGAGCTGGGCTTCCTCCAGACCATGAACCTCGTGCTCACCTCCGGCCCCTACAACGGCAGCACGCTCGCCGTG
CTCGGCCGCAACTGCCCGCTCACCGACGTCCGCGAGATGCCCGTCGTCGGCGGCACCGGCGCCTTCCGCTTCGCCCGCGG
GTACGCGCAGGCCCGGACTCACTGGCTCGACTTCAAGACTGGCGACGCCACCGTCGAATACGACGTCTACGTCATGCACT
AGCCTGAAAATGCTTTGAGGGCTT------ACTTTCGGCTA------------------TGCTTTGAGATTTGAGCGTTT
TCTT----TGTCCTACATATCGGTGCATTT-AC-TTGGGTTAATTGT---GCAAGTTGCAAGAATAAGTGGCCCTATGTG
AAATAGTA-------------TACTCTTTTTATTAGTGGAACTTGTTTAACGCACATTTTGTTCTTTTTCTTTTTGCTTG
AGAGATGCAAAAGCCTCGTATTTTGAACTTTTGTTGCATTGATGTGTAAGATCAAAGACGCAAAATCGCTGGGGCACGCA
CCTACCAAC-CCTGCCTGGCCGCTCGATTACCTCGCGATTCCTGAAGTAGTTGGATCCCATACGAGAGCATACTAAGTTT
TAAGTTTCACTCGTTGAAATGTACGATTTTTCATCTAAAACTTACGATTTTCTCGCACGCCTTTACCAAGTTTTATAGAT
AAATTTTTATGACATTTCTTTT----------------------------------------------------------
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>chr4D_831
CCACTCTA------------------------------------------------------------------------
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----------------------------------------CCACTCCAGTTTATGGAGCAGCCTTCTGAATC-CCAATTG
CTGCACGCCGCGTGTCGCTTGTGTTCCTTTTACGCTCCTTCCAT-CCACTATAAATAGCTGGTGACCTACACATGAAAGA
GCACA---AGCCACAGACACACGTAGTAGCATCTACGGAGTAGCACACATTACTTG----GCTCAAGAGATGGCCAAGGG
AGCGGTGATGCTTCTTGTTCTCTTCA---CGGTGCTGTCCGCCGTGAGTGAGGCCCATA---------GGCCCGGTAACA
GGGCCCTAGCCCATGGGCGTCGCCCGGGGGCCGACCCAGCTGCACCGACACACCTCCACTTCTACTTCCACGACAGCTCG
AGGGGTGCGTCCCCATCGGCGATGCGGGTGGCAGGGCCGGCGAATGTGCCATTGCAAACCCTTTTCGGCGCCGTGTACGT
TATGGACGACCCGCTGACGGAGAGGCCGGAGCTCGGGTCAGCGGCCGTGGGACGGGCCCAGGGCGTCTACATAGGGGCGG
ACCAGACAGCAATGGGCTTCCTGCAGGTCATGAACCTCGTGCTCACCTCCGGCCCCTACAACGGCAGCTCGCTCACCGTG
CTCGGCCGCAACAACCCGCTTGCCGACGTCCGTGAGATGCCCATCACCGGCGGCACCGGCGCCTTCCGATTCGCCCGCGG
GTACGCGCAGGCCCGGACCCACACGATGGACCTCAAGACCGGCGACGCCAATGTCGAGTACAACGTTTATGTCATGCATT
AGCATGCAAAA---------------------------------------------------------------------
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>chr4A_838
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----------------------------------------CCACTCCAGTTTATGGAGCAGCCTTCTGAATC-CCAATTG
CTGCACTCCACGTGTCGCTTGTGTTCCTCTTACGCTCCTTCCAT-CCACTATAAATAGCTGGTGACCTACACATGAAAGA
GCACA---AGTCACAGACACACGTAGTAGCATCTACGGAGTAGCACACATA--TTACTTAGCTCAAGAGATGACCAAGGG
AGCGGTGATGCTTCTTGTTCTCTTCATCACGGTGCTGTCCGCGGTGAGTGAGGCCCATA---------GGCCCGGTAACA
GGGCCCTAGCCCATGGGCGTCGCCCGGGGGCCGACCCAGTTGCACCGACACACCTCCACTTCTACTTCCACGACAGCTCG
AGAGGCACGCCCCCCACGTCGGTGCGGGTGGCAGGCCCGGCGAAGCCGTCGTTGCAGACCTTGTTCGGGGCGGTGTACGT
GATGGATGACCCACTGACGGAGAGGCCGGAGCTCGGGTCAGCGGCCGTGGGACGGGCCCAGGGCTTCTACATAGGGGCGG
ACCAGACAGCAATGGGCTTCCTGCAGGTCATGAACCTCGTGCTCACCTCCGGCGCCTACAACGGCAGCTCGCTCACCGTG
CTCGGCCGCAACTTCCCGCTCGCCGAAGTCCGGGAGATGCCCATCGTCGGGGGCACCGGCGCCTTCCGCTTCGCCCGCGG
GTACGCGCAGGCCCGGACCTACTCGATGAACACCAAGACCGGCGACGCCAACGTCGAGTACGACGTCTACGTCATGCATA
AGCATGCAAAT---------------------------------------------------------------------
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>chr4B_838
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----------------------------------------CCACTCCCGTTTATGGAGCAGCCTTCTGAATC-CCAATTG
CTGCGCGCCACGTGTCACTTGTGTTCCTTTTACGCTCCTTCCAT-CCACTATAAATAGCTGGTGACCTACACATGAAAGA
GCACA---AGTCACAGACACACGTAATAGCATCTACGGAGTAGCACACATTACTTACTTAGCTCAAGAGATGGCCAAGGG
AGCGGTGATGCTTCTTGTTCTCTTCATCACGGTGCTGTCCGCGGTGAGTGAGGCCCATA---------GGCCCGGTAACA
GGGCCCTAGCCCATGGGCGTCGCCCGGGGGCCGACCCATTGGCACCGACACACCTTCACTTCTACTTCCACGACAGCTCG
ACGGGTGCGTCCCCATCCGCGATGCGGGTGGCAGGGCCGAAGAATGTGCCGTTGCAGACCCTTTTTGGGGCGGTGTACGT
GATGGACGACCCGCTGACGGTTGGGCCAGATCCCCGGTCAGCGGCCGTGGGACGGGCCCAGGGACTGTACATAGGAGCAG
ATCAGACGTCAACGGGCTTCCTGCAGGCCATGAACCTCGTCCTCACCTCCGGCCCCTACAACGGCAGCTCGCTCACCGTG
CTCGGCCGCAACAACCCGTATGCTGACGTCCGCGAGATGCCCATCACCGGCGGCACCGGCGCCTTCCGATTCGCCCGCGG
GTACGCACAGGCCCGGACCTACTCGATGGACCTGAAGACCGGCGACGCCAATGTCGAGTACGATGTTTATGTCATGCATT
AGCATGCAAAT---------------------------------------------------------------------
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>chr4A_2056
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--------------------------GTTGCAGGCACAAACATTGTGATCTCATCGGTCGCACGTGCTAAGTTTCAAGAG
TGGAAACTTAACATTTATTT-CAAGATTTTTCAAAAATTATTAAAAATTTGGATCTTATTTGAAAGTCCTTGCCAA----
---GAGAAACACGAATACGAAC----------ATTTGATCTTTTTGTTCAAAAGATATATAAGTTTGAAAATCGAAAGCC
AAAAATAAAAGCACGCCTGAGGGACTGCATGTTGTGAGACCTGCGCGCCACACATCCTTGTCCAAATCAAAGAAGGGTGA
CGTCCGATGGTTACAACACGGCTTCTCTTACTGGTAGACACTGCCATCGCCTAAAGCAACGTCGCAAGGCCTCTCGATTG
CCTTGTCATTGTTTGTTCAGAAACTAATAATTTTCAAGTATTGTGGAGAAACGGACTTCTTACAGATCATTAGCTCACTA
CTATCTTCATTTCACAATGTAGTGTATATTTTGAAGTAAAATGCACGTATGGTCCTTAAACTTGGTGG
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS------------S-------S--S--S-----------------------------------------S----
-----------S-----------------------------------S-----------------------------S--
-------------------------------S------------------------------------------------
-------------------S-------------------------------------S----------------------
-------------------------------S------------------------------------------------
---------------------S-----------------S------------------------------S---------
----------------------------------------------------S---------------------------
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-----------------------------------S--------------------------------------------
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-----S--------------------------------------------------------------------------
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---------------SS-S-----------S-S-SSSSSSSSSSSSSSSSSSSSSSSSS---------------------
------------------------------SSSS---------S--S---S-----------------------------
-----------------------------------S----------S-----S----------------S----------
------------------S--------S-------------------------------S------S--S----------
--------SS--------------------S--S-------S------------------S---------SSS-------
-S-------S--S------SS--------------SS--SS--SS-----------S-S-S-------------------
-------S-S-------S---SSSS-------------------S------S---S-----S------------S-----
-S----S--S--S--S-------SS---SS-----S--SS-----------------------S-S---------SSSSS
SSS-------S------------S-----------S-S-------S-------------S------S-------------
--------S-------SS--------S-S--SSS-----------S------S---------S--------S--S-----
S----S------------S-S-------S---S------------------S--------S----S--------S-----
-------------------------------------S-----------------------------------------S
-SS-----S------------------------S--S-------SSS------------------S--
>forward_135
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-----------------------------------GTCCATCACCACCTCCACAG-------------------------
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>reverse_1962
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-----------------------------------------ACGAAGTAGTTGGATCCCGC-------------------
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