>input_sequence_75609
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--------ATGCAGTATATAGTAGTGCCAGCT-----------------ACATCGAAAACCATGGGGCCTTCACGAGCTG
TCCCCTGC---CTGGTCCTCCTCTTCCTCCTCTCCTCGTCCAGCGGCGCTTCCGTTGTAC--------------------
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----------------------------------------------------------TAGAAGACACGTGCAAATCCAT
CGCCGCCGGCAAGGAAAGGAGCATCGGCTACAACTACTGCATCAAGTTTTTCGAGGCCAGCAAGGGCAGCGCCACCGCCG
ACAAGCGTGGCTTGGCCGTCATCGCGTCGAAGCTCAACAGAAGAGCGGCAGCCAAGAGCATGGTCAAGCGCATCCACGCC
CTCAGGGCCTCGGAGAAGGACAAGGTCATCCAGATGGGCCTCGACATCTGCGGCCAATTGTACTCGACAGCCGTGGACGA
GCTCGATGCTGCGGCTAAAGGCGTCGAGGCGGGCACACCGGAAGTCAAATTTGACGCGGAGATGTACCTCACCGGCGCGT
TCGACGCCCCCGAGACCTGCGAGACCGGGTTCGGGGAGATGGGCCTGAAGTCGCCGCCC---------GACGCCGAGTTC
ACTAAGGAGGTGTACATCGCGATGGCTGTAACGCACTCGTTATAG-----------------------------------
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>chr2D_1_TraesCS2D01G452700
CCCGCCAAGTTCAGCGCTTCCTCTCGTCGTAGAAGGCGTGCCTCCGGCCACCTCTTCGTGTCCCAGGCGAGCTAGGTAAT
GCCCGATCCCTCCCTGCCATTTATAGTGCGCTATCATTTCGTTTAGGAGTCACCCGTATCATGCCATCGTCGCGCCCTCC
GTGCTCTCGCCATGCCGGAGCACGCTCTGCTTGTTTGAGCTCAGATCCGTGTGCGTAGTAGTTTTATATTCGGCCTAGCT
ACTTCTTTAACATA-CCATAGCAGTATAGCATTGGTCATCAGCCGACGCACAATT-CAGGTGGTGCTGGGATCGAATCCC
GAATCACCCTTTTTATCTATGTTTTTCTGTTTTTTTATGCCAAGTCTGTGAAGATCTGTGCTCTGTAGCTTTTTTGTAAA
TCAACGTAAATTCATCAGTAGCTCTTATGGATGCAAATGCAAGTCCTATGTGTTTTCTGTTCGGTGT---TGCATCTATT
------ATATGCCACTTGCACAAATTAATAAAATTGCCTAGCCACTGATTGTTCTGCTCAAA-TAGGCATGATAATGTTA
GTCTATGTTTTCCCAGATTTCTGTAAAACATAGCGTTTTGGAAAATTCACATCTTAAAAACCATGTATCATATAAAAC--
AATGCCATATATGCTTGTTGTTCAGTTTTATGTCTATTTTCTGGCCATGCCGTTTTCATCCCCACTAAAAATCTCCAACA
CTCTGTGTTCAGTAGCTAAAGTACCTATGAAAA--------------------------------------------ATG
TGCAACAGTGTGACTCGTAGATATGCTTTGGGCTACTCTTGTACGCACACAGGTATAGCCCAGCTCGGTTCAAAGGCCTA
GGTTAAGCTGGAGAAG-TTTCTCTTTTAAAACAAGCAAATCCCTACTTC-------------------------------
-----TTTCTGGAAGTAAATAGATTATGCTCCTATTTAT------AGCAAAAAATTACAGTT-ATTTAACCCTGCCATTT
T-------------------------------------------------------------------------------
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------------------------------------------------------------TGTCTCTGTTTTTCTGTTGT
TCATGCCAAGTCTGAA----------------------------------------------------------------
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---------------------------------------------------------------TATCTCGATGACTGTCT
TGTAGTACATGCAGTATATAGTAGTGCCAGCT-----------------ACATCGAAAACCATGGGGCCTTCACGAGCTG
TCCCCTGC---CTGGTCCTCCTCTTCCTCCTCTCCTCGTCCAGCGGCGCTTCCGTTGTAC--------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TAGAAGACACGTGCAAATCCAT
CGCCGCCGGCAAGGAAAGGAGCATCGGCTACAACTACTGCATCAAGTTTTTCGAGGCCAGCAAGGGCAGCGCCACCGCCG
ACAAGCGTGGCTTGGCCGTCATCGCGTCGAAGCTCAACAGAAGAGCGGCAGCCAAGAGCATGGTCAAGCGCATCCACGCC
CTCAGGGCCTCGGAGAAGGACAAGGTCATCCAGATGGGCCTCGACATCTGCGGCCAATTGTACTCGACAGCCGTGGACGA
GCTCGATGCTGCGGCTAAAGGCGTCGAGGCGGGCACACCGGAAGTCAAATTTGACGCGGAGATGTACCTCACCGGCGCGT
TCGACGCCCCCGAGACCTGCGAGACCGGGTTCGGGGAGATGGGCCTGAAGTCGCCGCCC---------GACGCCGAGTTC
ACTAAGGAGGTGTACATCGCGATGGCTGTAACGCACTCGTTATAGGTAGGTAGCTTGATTAGAAGCGAATTGTCTTTCAG
GTAGGTAACACTAGTAATCTGATCGTGTATCAGACTAATCATTGGCCACTGGATTAGTTAGAAGCAGGACGTACGATCGA
TCTTGTTGCCGCTACCCCGCAGAAAAAAAAAGATCTTGTTGCCGCTAATCAAGTGCTTTGTAACTGCTCCCGCAACCTAC
GCTCGGGTTACTGTTACTCTTTCCGTCAGTTTATTCCTTTCCTCGTTGCATGCATCCTTAAATTAGACCTCCTCACGCGC
GCCGCCACACCAGACCGGCCGCGCGCTACCGCAAAACAAACAGGCACGGGGCGTACGTGAGGTCAACATGACGCCTACTC
AATTCATTTTTCGATTCTTCCTTCGTTTTCCCTTCTTAATTAATTAATCTTGTCAACTGCAATCTCTCGTCTCTCCCAGC
AGAAGAAATAAAAAAAAAAGTCCCGGCGAATCGATCGGCAAAGCCTTGCTCCCTCGCTGCCTGCCCACGTACGGCCCGCC
TCTCTTCTATTTCTACTCCTCGTCACCCGCCGTTGCCGTACGTCCCGGCCGCTGCAGCCGCCCGGACCCGGACCGCCTCT
GCTCGTCTCCTTCCTCTCCGGTCATCACCGCCGTCCGGTCCGGCCACTCAACAACTTGATTGCAATACGGAGCGCAAAGA
CCGCGCGCAGCTTGAGTCCAAAAAGGAATATAATTACTCCCTCCAATCCATATTAATTCTTAGTGATAAGTACAACTTTA
TACTAAATGAGCAACAATTAACATGGATTGGAGACAATAATGATCCATATTAATTCTGAGTGATTCGGTAGTACAACTTT
ATACTACTAAATGAGCAGCAATTAACATGGATCGGAGAGAGTAACAATCCATATTAATTCTCGGTGATTAATTACAACTT
TGGACTAAATCGGCAACAATTAATATGGATCAATGGAGTAATTTATTAATAGCAAAATACAATATTTTTTTGGAATAAAC
TGCTG
>chr2B_167
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------TCGCCATGCCAGAGCATGCTCTGTTTGTTTGAGCTCAGATCCGTGTGTGCAGTATGTTTACCCTTAGCCGAGCC
CCTCCTGTAAGATACCCAAAGCAGCAGTGCAGTGGACAGAACACGACGCACTCATCCATGGGGTCCTGTGATTGAATCCC
GGATCACCCCATTTA--------TTTCTGTTATTTTATGCAAAGTCTGTGAAGAT---TGCTCTGTAGC-TTTTTGTAAA
TCAATGTAAATTCATCAGTAGCTCTTATGGATGCA--TGCAAGCCCTATGTGTTTTCTGGTCAGTGTCGTTGCATCTACT
TTCATAATATGCCACTTGCACAAATTAATAAAATTGCCCAGCCACTGATTGTTCTGCTCAGACTAGCTGTGATAATGT--
---TATGTTTTCCGAGATTTCTGTAAAACATAGCGTTTTGGAAAATTCATATCTTAAAATCCATGCATCATATATAAAAT
CAAGCCATATATGCTCGTTGCTCAGTTTTATGTCTATTTTCAGGCCATGCCATGTTCATCCCCACTAAAAATCTCCAACA
CTCTGTGTTGAGTAGCTAAACTACCTATGAAAATGTTTCTGATCTGTTGACACTTGACACGTAAAATTTGTCCCTGTATT
TGCAACAGTGTGAGTTTTGGAC----------------------------------------------------------
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--------------------------AATCTCGTTTACTACCAACATCGACATCGAAAAGCATGGGGCCTTCACGAGCTG
TCTCCTGCTGCCTGGTCCTCCTCTTCCTCGTCTCCTCGTCCAGCG---CCTCCGTTCTACTA------------------
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-------------------------------------------------------------AAGACGCGTGCAAATCCAT
CGCCGCCGACAAGGAAAAAAGCATCGGCTACAACTACTGCATCAAGTTTTTCGAGGCGAGCAAGGGCAGCGGCACCGCCG
ACAAGCGTGGCTTGGCCGTCATCGCGTCGAAGCTCAACA---GAGCGGCAGCCAAGAGCATGGTCAAGCGCATCCACGCC
CTCAGGGCCTCGGAGAAGGACAAGGTCATCCAGATGGGCCTC--------------------------------------
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>chr2A_376
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---------------------------------------------------------GTGCTCTGTAGCTTTTTTGTAAA
TCAACGTAAATTCATCAGTAGCTCTTATGG----A--TGCAAGTCCTATGTGTTTTCTGTTCGGTGT---TGCATCTACT
TTCATAAAATGCCACTTGCACAAATTAATAAAACTGCCTAGCCACTGATTGTTCTGCTCAAAATAGGCATGATAATGTTA
ATCTATGTTTTCCCAGATTTCTGCTCAA-ATAGCGTTTTGGAAAATTCATATCTTAAAAACCATGTATCATATA-AAAAT
AATGCCATATATGCTTGTTGTTCAGTTTTATGTCTATTTTCTGGCCATGCCGTTTTCATCCCCACTAAAAATCTCCAACA
CTCTGTGTTCAGTTGCTAAAGTACCTATGAAAA--------------------------------------------ATG
TGCAACAGTGTGACTTGTACATATGCTTTGGGCTACT------------------------------------------A
GGTTAAGCTCGAGAAG-TTTCTCTATTAAAACAAGCTAATCCCTACTTC-------------------------------
-----TTTTTGGAAGTAAATAAATCATGCTCCTG------TTTATAGCAAAAGGTTACAGTCCATTAAACCCTGCCATTC
TATACCTACTAATAAAGCAAGGTGTGTTTCTCCAATTTTTTCATCCGTTCACCAGCGGAAATATATTTTTTACTATCCGA
GGTGGTACTAATGTTTTGTGCATCCATGTGCTAGAAAAAGAAATACAGTTTGTCCAGAATTTCGTACATGGGCCGCACGC
TATAGCCGAGTAAAAGCCAGCCCACTTATTTCCCTGCCCATGCAGCTGGGTAATCCTATTTGGCGCACCGAGCGATAGAC
AGTGGTAGCTTCACACAGATAGCCCTGCACTGTGCCGGCCTGTTTTCACTAATTCTTTGTTCATTTTATATTTAACATAT
TATGTTCCTTTCTCTTTTTTCCATCTTATTTTATCTTCATTCTAATTTTATTTTAGTTTCTTTTTAATTTTTTGATCAAT
TAAAATTTTAGTTTTTTTGAATTTAAATATTTGTTCAAATTTTTAAGAATGTTCAGAATTCCAAAATTTTATTCCTGTTT
TAAAAATATTCGGATATTGAAAAAAATTCTTGTTCCGAAATTTGTTGAAAACTGAAAAAATGTTTCTGTTTTACAAGATT
GTTCGAGATTAAAAAAAGTGTTTTCAAAAGTGTTCCAAATTCAAAAAATGTTCTTATTGTAGTGAAATGTTCACAAATTC
AACAGAAAAATATTTTAAATAGCCTCATATTGCTCTTTACATACGGTCGTACCAATTTATAAACATGTGTGAAACTACAC
GTAGTAATAAGATTTATGAAGTATGGATCTATTATGTTGGACGAAGGGTGGATGAATTGGCACGTGAGCTAGCTGGAAAA
GGACACTGGAATTTTTAATTGAAAAGTAATGCTCCCATTTTTCAAAAAAAAAAATTCCAAAATTGTTCAAAGTTCTTGAA
AAAATGCTCCAAATTTGAAAAATATTCTTGTTTTATAGGAATGTTCACAAATCAAATAATGTTAGCGTTTAAAATTGCCA
ATTTTCTAAAATTGTTTTGAATGGTAAACATGTTGCCATTTTTTGAAAATTGTTCACAAATTAAAAAAATGCTCATGTTC
TTATAAAAGGTTCATGTTTTTGAAAAATGTTTGTGAATTTTAAAAAATGTATGAAACTTCCAAAAAACAAATCGCCATTT
TGAAAATTGTTCGGGATTTCCAAAAAAATCATTTTTCCAATAATATTCGGCAATTCATAATTATAATTATTTTTTTGAAA
AGCTGAAAAAAAAAGTAATCATAGAATGTTTCGAATTTGTTGCTGCAGTTTGTTCTTAAATATTTATGTTGGCCATTGGT
TAGCTGGACATGTTTGTTCGAGTGAATGGCAACACTATGTCGGGTGTTTGAGATCATGAGTATGATCCTTCAACTCATCT
TTCTTTCTGAATTTTTACTCACGCCTTACAAACACAGGTCGATTCGGTGTCTAAGAATTTCACACCCCACGAAATTTAGC
CAGTCCAGCTACCTAGGAAATAAGGAAAATAAAATATGTTCAATACTTATATACGTGTGCGAAACGATATGTAGTAATCT
AAATGAAGGATGGATGAATTAACTTGGATGAAGGATGGATGAATTAAGCCGAATGAAGGATGTATGGATTAGTACATGAG
CTTTCTAAAAAAGGAATTAAATGAAGGAAATATGCCCTAGAGGCAATAATAAAGTTATTATTTATTTCCTTATTTTATTA
TATATGTTTATTATTCATGCTAGAATTGTATTAACCGGAAATATAATACATGTGTGAATTATTTATCTCGATTACTGTCT
TGTA---CATGTAGTATATAGTAGTGCCAGGT-----------------ACATCGAAAACCATGGGGCCTTCACGAGCTC
TCCCCTGC---CTGG---------TCCTCCTCTCCTCGTCCAGCG---CTTCTGTTCTACTCCCTCCGCTCCTAAATATA
AGTCTTTGGAGTGATTTCACTATAAACCACATACGAAGCAAAATGAGTGAATCTATACTTAAAATGCATCTATATATACA
TTCGTATGTGGTTTATAGTGGAATCTCTATAAAGACTAATATTTAAAAACGGAGAGAGTAGAAGACACGTGCAAATCCAT
CGCTGCCGGCAAGGAAATGAGCATCGGCTACAACTACGGCATCAAGTTTTTCGAGGCCAGCAAGGGCAGCGCCACCGCCG
ACAAGCATGGCTTGGCCGTCATCGCGTCCAAGCTCAACA---GAGCGGCAGCCAAGAGCTTAGGCAAGCGCATCCACGCC
CTCAGGGCCTTGGAGAAGGATAAGGTCATCCAGATGGACCTGGACATCTGCAGCCAATTGTACTCGAAAGCCGTGGACGA
GCTTGATGCTGCAGCTAAAGGCATCAAGGCGGGTACATCGGAAGGCAAATTTGACGCGGAGATGTAC-------------
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>chr2B_767
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------------------------GCTTTGGGCTACTCTTGTAGGCA--CAGGTATAGCCCAGCTCGGTTCAAAGGCCTA
GGTTAAGCTCGAGAAGTTTCCTCTTTTAAAACAATCTAATCACTACTTCTAAACCTAAAAAAAATTCTAATCCCTAGTCC
TGCTATTTCTGGAAGTAAATAAATTCTGCTCCTATCTATTTTTGTAGCAAACAATTAATGTCCATTAAAACCTGCCATTT
TGCTCC--------------------------------------------------------------------------
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-----------------------------------------------------------TATTTATCTCGATGACGGTCT
TGTA---CACATACCATCTGCATACAAATCTTGTTGACTACCAACATTG-CATCGAAAACCATGGGGCCTTCACGAGCTC
TCCCGTGC---CTGGTCCTCCTCTTCCTTCTCTCCTCATCCAGAG---CTTCCGTCT-----------------------
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----------------------------------------------------------TAGAAGATACGTGCAAATCCTT
CGCCGACGGCAACCCGG---GCGTCGGCTACGACTATTGCATCAAGTTTTTCCAGGCGAGCAAGGACAGTGCCACCGCCG
ACAAGCGTGGCTTGGCTATCATCGCATCAAAGCTCACCG---GAGCGGCAGCCAAGAGCATAGGCAAGCACATCCAAGCC
CTCAAGGCCTCGGAGAAGGACAAGCACATCCAGTCGGGCCTCAATGACTGCCGTGATTTGTACTCGCAAGCTGTGGACTT
GCTCGACGTGGCAGCGAAAGGCGTCGCGGCGGGTACACCGCGAGGCAAACTAGACGCAGTGGCGAACCTCAGCGGCGCAC
TGGTCAGCCCCCAAACCTGCGAGGACGGTTTCAGCGAATTGGGCGTGAAGTCGCCGCTCTCCGCCGAGGACTCCGAGTTC
ACTAAGGAGGTCTCCATCGCACTCGTTATAACGAACTCGTTATGA----GTAGCTTGATTAGAAGGGAATTATTTTTCAG
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>chr2D_1025
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-------------------------------------------------ACATCGAAAACCATGGGGCCTTCACGATCTC
TCCCCTGC---CTCGTCCTCCTCTTCCTCATCGCCTCGTCCAGAG---CCTCCGTCT-----------------------
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----------------------------------------------------------TAGAGGACACGTGCAAATCCTT
CGCCGCCGGCCACCCCG---GCATCGGCTACGACTACTGCATCAAGTTCTTCCAGGCCAGCAAGGACAGCGCCACCGCCG
ACAAGCGCGGCCTGGCCGTCATCGCGTCGAAGCTCGCCG---GAGCGGCGGCCAACAGCATCGTCAAGCGCATCCACCCC
CTCATGGCCTCGGAGAAGGACAAGCGCATCCAGATGGCCCTCCGCGACTGCGACCAGTTGTACTCGCTGGCCGTGGACGA
GCTCGATGGCGCGGCTAAAGGCGTCGCGGCGGGCTCACCGCGAGGCAAAGCGGACGCGGCGGCGTACGTCGACGGCGCGT
TGGGCGCCCCCCGCACCTGCGAGACCGGGTTCGGGGAGATGGGCGTGGAGTCGCCGCTCGTTAAGGAGGACTCCGAGTTC
ACCAAGGAGGTCTACATCGTGCTCGATATAGTGCACTCGTTATAA----GTAGCTTGATTAGAAGCGAATTGTTTCTCAG
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>chr2A_1026
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--------------------------------------------------CATCGAAAACCATGGGGCCTTCACGAGCTC
TCCCGTGT---CTGGTCCTCCTCTTCCTTCTCTCCTCGTCCAGAG---CCTCCGTCT-----------------------
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----------------------------------------------------------TAGAAGATACGTGCAAATCCTT
CGCGGCGGGCAACCCGG---GCATCGGCTATGACTACTGCATCAAGTTTTTCCAGGCGAGCAAGGATAGCGCCACCGCTG
ACAAGCGTGGCTTGGCCGTCATCGCGTCAAAGCTCACCG---GAGCGGCAGCCAAGAGCATAGGCAAGCACATCCAAGCC
CTCAAGGCCTCGGAGAAGGACAAGCACATCCGGTCAGGCCTCAATGACTGTGGTGATTTGTACTCGCAAGCTGTGGACTT
GCTCGACGTGGCGGCGAAAGGCGTCGCGGCAGGTACACCGCGAGGCAAACTGGACGCAGTGGCGAACCTCAGCGGCGCGC
TGGTCAGCCCCCAAACCTGCGAGGACGGGTTCAGCGAATTGGGCGTGAAGTCGCCGCTCTCCGCCAAGGACTCCGAGTTC
ACTAAGGAGGTCTCCATCGCACTCGTTATAACGAACTCGTTATGA----GTAGCTTGATTAGAAGGGAATTATTTTTCA-
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----------S-----S------S-----------------------S-S----SS----SSS-SS---S---S
S--S--S---S-------S-----S-SS---S---S--SS-SS--------SSS----S-S---S---S---S-------
-S-------SS----SSSSSSSS--------S--------S--------------SS-----------------------
-----------------------------------SS-----------------------------------------S-
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S------------------------------------------------S------------------------S--S--
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---------------S---------------------------S---SS-------------------------------
---------S--------------------------S-------------------------------------------
---------------------S-------------S-------------------------S----S-------------
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---------------------------------------------------------------S--------S-SSSSS-
SSSS-SS-SSSSSS------------------------------------------------------------------
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----SSS----S------------------S-------------------------------------------------
---------------------------------------------SSS--------S-----------------------
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-----------------S--------------------------------------------------------------
---------------------------------------SSS--------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------S--------------------------S--------
-S-S-------S-S------------------------------S------------S-------------S--------
-----------S---------S-S-S-S----------------SSSSS------------------------S------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_149
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-------------------------------------------------TCACCCGTATCATGCCATCG-----------
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>reverse_3799
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--------------------------------------TTCCTCGTTGCATGCATCCT----------------------
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