>input_sequence_75605
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------------------------------------------------------------------------ATGTGCGG
AAAGGGCCAGAACAACGGGCTCGCGTCGCCGGCGGGGACAAGCAGCACGGCGACCGCCATCGTCGTTCTCGCGTCGCTGC
TCCTCGCGGCCTCGGTCGC---TGTCTTCCTTGTGTCGCCGCCGGCGCCGGCGGCTGCGGATGGGAAGCCCCCTGAGCCG
GTGGAGCTCGCCATCGGCGTCGCCGGGCACGAGGGCTGGCTGGACGCGCTCCGGGCGTGGGCCAAGCTGGCGTGTCTCAG
GCTCCGCCCGCTCGAGCCAAGGTACATGTCGTGTTCAC----TTCTTTCTCCGTGCACGGGCCCAAGCACGCGTGTCCTC
ATCTCATGGCGTGTTGGTTACTTGTTTTTGCGTGGCGGCTGATGAAGGTGTGATCTGAGGAGCCCGGGGTCGATGAAGAA
GGCGGCCAGGCAGAGCCTGGCGATGGGCAAGGAGGCCGTGGAGCACACGGCGGTGTCCGCCGCGAGGGCCGCCGAGGAGA
CCATCGGGAGGACCACGGAGAAGGTGCGGAGGAAGGTCTCCTCGCCGTCGCCGTCGCCGTCC---GCGCCACGCGCCGAT
GGAGACCTGTGA--------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G184700
TGATCTTGGCAGATGGTTGTGGAACTGGATGGGGGAGGCACGGGATGAGGCAAAGGAGATGCTTTTGCTGGGCCTCTACG
GTCTCTGGCTCGCGAGAAACGAAGCCCGGGACGGGGTGCGCATCAAAAACCCATTGGATGTTGTTGGCTCTGTGTCGACA
TTCATGGAAGAGTGGACGGAAGCCGTGGAGAAGAAAGCGCGAGGTGTCGTCAAACCACCGCCTGAGAAATGGCAGTCGCC
GGATGCGGGATGGATCAAGCTAAATATGGATGGCGCGGTGTCTCTTGCTTCAAGGAATGGCGGGGGCAGGGTGGTGGCCA
GAGATCATGAGGGTGCTTTCCGGGGTGCCCTGACGCAGAACTTCCCCAACATCCTAAAGCCGGAGATCATTGAGCTGATG
GCCTGTAGAAAGGCTCTGGAGTTCGGGCGTGAACTTGGCTTCCAACGAGTCCATGTGGAGATGGATTGCAGCGAAGCGGT
CAGCATGATCAACTCGCCTGCCCGAAACCTGTCTGTCGCGGGGCCCATCGTCGAAGATATCAAATCCCTGATGCAAGGGT
GGCTGGGTTGCAAGATCACCTGGCGCAGGAGAACTGCAAACCGGGCCGCTCATGCGCTGGCGAAGGTAGCTGCAGGTGAC
GGTGTTTCTGTTGTCTGGAGACATTCGGCTCCGGACTGTATCATTTCTGTTTTAGCGGACGAGGTTCCAGACTTTGCTTA
AATAAAGTTAGATGTTTCCTAAAAGAAATGACATGGTACGGCCCGGTTCATTTGTT-------TTACCAAAGCAGCTGCG
TGTACGTGCCGCGACAGGTGTCCCCGAAGTCGGCAGCCTCGCTCGGCGACCTGTCCTCTCCCACCGCCGCACGTACGTGT
TGCCTCACGTGTCCGCCCAACCGATCAAAACTCCCACCCAACACCACCACGTACGGTCCGACCGTCCGAGCCAATCCAGG
AGCGCCGCCGA----------------------TCATTTCTCTCCGCCACCACCACCAGCCGCAAA---AAAATGTGCGG
AAAGGGCCAGAACAACGGGCTCGCGTCGCCGGCGGGGACAAGCAGCACGGCGACCGCCATCGTCGTTCTCGCGTCGCTGC
TCCTCGCGGCCTCGGTCGC---TGTCTTCCTTGTGTCGCCGCCGGCGCCGGCGGCTGCGGATGGGAAGCCCCCTGAGCCG
GTGGAGCTCGCCATCGGCGTCGCCGGGCACGAGGGCTGGCTGGACGCGCTCCGGGCGTGGGCCAAGCTGGCGTGTCTCAG
GCTCCGCCCGCTCGAGCCAAGGTACATGTCGTGTTCAC----TTCTTTCTCCGTGCACGGGCCCAAGCACGCGTGTCCTC
ATCTCATGGCGTGTTGGTTACTTGTTTTTGCGTGGCGGCTGATGAAGGTGTGATCTGAGGAGCCCGGGGTCGATGAAGAA
GGCGGCCAGGCAGAGCCTGGCGATGGGCAAGGAGGCCGTGGAGCACACGGCGGTGTCCGCCGCGAGGGCCGCCGAGGAGA
CCATCGGGAGGACCACGGAGAAGGTGCGGAGGAAGGTCTCCTCGCCGTCGCCGTCGCCGTCC---GCGCCACGCGCCGAT
GGAGACCTGTGATCCGCATGTATCCCCGTCCACACCGCTCTCCTGCTTCACTG------------------TATGTAC--
--CTGTAGCTTTCTACTATTGCGAGAAGAAAAGAT---------GTTGTAACGTGCTGTGAAATGTGTATGCGTATCCTT
CGATTCTGCCTTTGTCTGTGCCTTGCTTGTGAATATGAGACGTC------------------------------------
------------------AAAGGAATGCATTTTGGTTGCAACAAGTTGCATTGACAGCACTCTGCAGCCAT---------
--GTCGACGAGACTTCATTGTCGAAGTGATAACAGAAATAGCAGTTCCATCAATGAAAAAAAAAAACCTCCTGCAGCACA
ATAGCAACATGACTTGTCCAATGCATATGAAGTTTCTTAACTTGATAACAACCGGCATGCAAATGGGTCAGTTGCCGGCT
CAAGTCGACC-----------------------------------------------------------------ATAAC
ATGATTTTCTCAC---CTAGAGTGGAGAGAGATTTTCCACTATGAGACTAGGAAACAATCTTCTTCCTTCAGGAGTAACA
TAACATCTCATCTCAAAAGCCTATGGTATGGACACAGGAGGGGTACACGGAATATACAAGGCAATGCAATCCATTTCATC
CATGTCGGGGAGGACCGGC--------GTCGCTC-ATTCCGGGCAGATTTCCCTGAAGATGGGCAGCCGGCGGCGGCCGC
TGTGCCCGTAGAGGGCCTCGGCTATCAGGTCTTCTTCCTCCTCTGTTGGCTGTGCTGCTGCAGACATCGCCTGCCTTGAA
GGTGTCGTTGAACCGGGTTTCGGTGTCGACAGAAGGTCCGGCATGTTTCCTGGGATGACGGCACCATCTGGTGATCGGAA
GTTGGAAAATGTCTGCTTGAGTTCGGGGAAACCTGGAGCGCCAGTGAGCCCGCCAGCCTATGCAACATGAAACGAGACAA
AACAGATGTTACTGCATATGGCACACTATACTTTCTGATGATAAAGGACTGTTAAAAAGAGA--------AATATATTAG
GCTAGTCACCAAACTAGCTTAATAGAATGATGATACTAGTAAACCATCTTATGGTTGTGTTGGTTTACAAGGA
>chr3B_1
TGAACTTGGTCGATGGCTGTGGAACTGGATGGGGGAGGCTCGAGATGAGGCAAAGGAGATGATTCTCCAGGGCCTCTACG
GACTCTGGCTAGCGAGGAACGAAGCAAGGGACGGGGTGCGCATCAAAAACCCTCTGGATGTTGCTGCCTCAGTGTCGACA
TT------------------------------------------------------------------------------
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---------------CATGGATAAGTGGACGGAGGCAGTGGAGAAGAAGGCGCGAGCTGGA-------------------
-----------------------------------GTCAAA---CCACCACCGGAGAAGTGGCTGGCGCCAGCTGCGGGA
TGGGTCAAGTTAAACGTGGATGGAGCGGTG--------TCTCGTGCTTCAGGGAGCGGTG--------------------
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------GAGGCGGGGTGGTGGCTAGAGAT-----------------------------------------------CACG
AGGGGGCTTTCCGGGG---TGCCCTGACATAGAGCTTTCCCAACATCCTGAAGCC---GGAAATCGCCGAGTTGCTGGCC
TGTAAAAAGGCTCTGGAGTTCGGGCGTGACCTGGTTTTCATCGAGTCCAAGTGGAGATGGACTGCAGCGAAGCCGTTAGC
ATGATCAACTCAC---CCGCCCGTAACTTGTCTATTGCGGGGCCAATCGTCGAA--------------------------
--------GATATCAAATCCCTGATGCAAGGATGGATGGGTTGCAAAGTCACATGGCGAAGGAGAACTGCAAA-------
-----------------------CCGAGCCGCTC-ATGTACTGGCGAAGGTA----------------------------
-----------------------------------------------------GCTGCTGCTGATGGCGTTTCTGTTGTC
TGGAGGCATTCGGCCCCAGA------------------------------------------------------------
-TTGTATCATTTCTGTTTTAGCGGACGAG---------------------------------------------------
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>chr2D_748
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---------------------------ATGACATGGTACGGCCCGGTTCATTTGTT-------T-ACCAAAGCAGCTGCG
TGTAAGTGCCGCGACACGTGTCCCCGAAGTCGGCAACCTCGCTCGGCGACCTGTCCTCTCCAACCGCCGCACGTACGTGT
TGCCTCACGTGTCCGCCCCAGCGATCAAAACTCCCACCCAACACCACCACGTACGGTCCGACCGTCCGAGCCAATCCAGG
AGCGCCGCCGAGCCCTCCTTCC-----TCCCGATCGTTTCTCCCCACCACCACCACCAGCCGCAAAAAGAAAATGTGCGG
AAAGGGCCAGAACAACGGGCTCGCGTCGCCGGCGGGGACAAGCAGCACGGCGACCGCCATCGTCGTCCTCGCGTCGCTGC
TCCTCGCGGCCTCGGTCGCCGCTTTCTTTCTGTCGCCGTCGCCGTCGCCGGCAGC---GGACGAGAAGCCCCCTGAGCCT
GTGGAGCTCGCCATCGGCGTCGCCGGGCACGAGGGCTGGCTGGACGCGCTCCGGGCGTGGGCGAAGCTGGCGTGCCTCAA
GCTCCGCCCGCTCGAGCCAAGGTACACATCGTGTTCTCTT----CTTTCTCCGTACACGGGTCCAAGAACGCGTGTCCTC
ATCTCATGGCGTGTTGGTTACTTGTTTTTGCGTGGCGGCTGATGAAGGTGTGATCTGAGGAGCTCGGGGTCGATGAAGAA
GGCGGCCAGGCAGAGCCTGGCGATGGGCAAGGAGGCCGTGGAGCACACGGCGGTGTCGGCCGCGAGGGCCGCCGAGGAGA
CCATCGGGAGGACCACCGAGAAGGTGAGGAGGAAGGTCTCG---GCGTCGCCGTCGCCGTCC---GCGCCACGCGCCGAT
GGAGACCTGTGATCTGCATGCAGGTCGACGCAAGCGCCAAAATTTTGCGAGCTGTATCCCTCCCTCCCACTTATGTAC--
--CTGTAGCTTTCTACTAGTTTGAGAAGAAAAGTTGGTGTACTCGTTGTAACGTGCTGTAACATGTGTATGCGTATCCTG
CGATTCTGTCTT-----------------------TGAGACGTC------------------------------------
------------------AAGGAAATGCATTTTGGTTGCAAATAGTTGCATTGACAGCGCTCTGAAGCCAT---------
--GTCAGAGCCCAGGTGTTGATAAG----TAACAGAAATAGCAGTTCCATCAATGG-----AAAACCCTCCTGCAGCACA
ATGGCATTTGTTGCAG---CTCCTTGCAAAAGAGTTTTGACT---TAACAAATGGCAAGCAAATGGGTCAGCTGCCGGAT
ACT----------------------------------------------------------------CGACCCCAATAGC
ATGATTGTCTCAC---CTAGAGTGGAGAGAGATTCTCCACTATGAAACTAGGAAACAGTCTTCTTCCTTCCGAAGTAACA
TAACATCTGATCTCAAAAGCCTATGGTATGGACACAGGAGGGGTACACGGAATATACAGGGCAATGCAATCCATTTCATC
CATGTCGGGGAGGACCGGCATCGCCGCGTCGCTC-ATTCCGGGCAGATTTCCCTGAAGATGGGCAGCCTGCGTCGGCCGC
TGCGCCCGTAGAGGGCCTCGGCTATCAGGTCTTCTTCCTCCTCTGTTGGCTGTGCTGCTGCAGACGTCGCCTGTGCTGAA
GGTGTCGTCGAACCAGGTTTCGGTGTCGACAGAAGGTCCGGCCTGTTTCCTAGGATGACGGCGCCATCTGGTGATCGGAA
GTTGGAAAATGTCTGCTTGAGTTCCGGGAAACCTGGTGCGCCAGTGAGCCCGCCAGCCTATGCAACATGAACCCACACAA
ACGAGATGTTACTGCATATAGTACACTGTAGATTTTGATGGTAAAGGACTGTCAGTCTGTCACAAAGGGCAATATATTTG
GATAGTCACCAAACTAGCTTAAGAGAATGATT---CTACTAAACCAGCTTATGGTTGTGTTGGTTTACAGGGA
>chr2A_750
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-----------------------------GACATGTCACGGCCCGGTTCATTTGTTTTACTTTT-ACCAAAGCAGCTGCG
TGTACGTGCCGCGACACGTGTCCCGGAAGTCGGCAGCCTCGCTCGGCGACCTGTCCTCTCCAACCGCCGCACGTACGTGG
TGCCTCACGTGTCCGCCCCAGCGATCAAAACTCCCACCCAACACCACCACGTACGGTCCGACCGTCCGAGCCAATCCAGG
AGCGCCGCCGAGCCCTCCTCCCTCCCGTCCCGATCATTTCTCTCCGCCACCACCACCAGCCGCAAAA--AAAATGTGCGG
AAAGGGCCGGAACAACGGGCTCGCGTCGCCGGCGGGGACAAGCGGCACGGCGACCGCCATCGTCGCCCTCGCGTCGCTGC
TCCTCGCGGCCTCGGTCGTC---GTCTTCCTCGTGTCGCCGCCGGCGCCGGCGGC---GGACGAGAAGCCCCCCGAGCCG
GTGGAGCTCGCCATCGGCGTCGCCGGGCACGAGGGCTGGCTGGACGCGCTCCGGGCGTGGGCCAAGCTGGCGTGCCTCAA
GCTCCGCCCGCTCGAGCCAAGGTACATATCGTGCTCTCTTCTTTCTTTCTCCGTGCACGGGTCCAAGCACGCGTGCCCTC
ATCTCATGGCGTGTTGGTTACTTGTTTTTGCGTGGCGGCTGATGAAGGTGTGATCTGAGGAGCTCGGGGTCGATGAAGAA
GGCGGCCAAGCAGAGCCTGGCGATGGGCAAGGAGGCCGTGGAGCAGACGGCGGTGTCGGCGGCGAGGGCCGCCGAGGAGA
CCATCGGGAGGACCACCGAGAAGGTGCGGAGGAAGGTCTCC---CCGTCGCCGTCGACGTCGTCGGCGCCACTCGCCGAT
GGAGACCTGTGATCTGCATGCAGGTCGACGCAAGCGCCAAAATTTTCCGAGCTGTATCCCTCCACTTTATGTTACCTGTA
AGCTGTAGCTTTCTACTAGTGCGAGAAGAAAAGATGGCCCCCTCGGCGATATGT--------ATGCGTATGAATATCCTG
CGATTCTGTTTT-----------------------TCTCTGTACCCTGCTTGTGAATATGAGACGGTCTAGATCGGAAGT
TTTCTCGGCAAAAAAAAAAAGGAAATGCATTTTGGCTGCGAAAAGTTGCATTGTCACCAATCTGCAGCCATGTCGATGAG
AGGTCAGAGCCCAGGTGTTGGTAACAGAATTAG-----TAGCAGTTGCATCAATGG-----A----------GCAGCACA
ATGGCATTTGTTGCTGCAACTCCTTGCAATACTCT------T---TAACAAACGGCAAGCGAATGGGTCCGCTGCCGGCT
CAAGTCGACC-----------------------------------------------------------------ATAGC
ATGATTTTCTCAGAGACTAGAGTGGAGAGAGATTCTCCACTGGGAAACTAGTAAACAGTCTTCTTCCTTCAGGAGTAACA
TAACATCTGATCTCACAGGCCTATGGTATGGACACAGGAGGGGTACACGGAATATACAGGGCAATGCAATCCATTTCATC
CATGTCGCGGAGGACCGGCATCGCCGCGTCGCTCTATTCCGGGCAGATTTCCCTGAAGATGGGCAGCCTGCGTCGGCCGC
TGCGCCCGTAGAGGGCCTCGGCTATCAGGTCGTCTTCCTCCTCGGTTGGCTGTGCTGCTGCAGACACCGCCTGCCCTGAA
GGTGTCGTCGAACCAGGTTTCGGTGTCGACAGAAGGTCCGGCCTGTTTCCTAGGATGACAGCACCATCTGGTGATCGGAA
GTTGGAAAATGTTTGCTTGAGTTCGGGAAAACCTGGTGCGCCAGTGAGCCCGCCAGCCTATGCAACATGAAACAAGACAG
AACAGATGTTACTGCATATAGCACACTGTAGATTTTGATGATAAAGGACTGTCAAAAAGGGA--------AATATATTAG
GCTAGTCACCAAACTAGCTTAAGAGAATGATT---CTAGTAAATCATCTTATGGTTGTGTTGGTTTAGAGGGA
>SNPs
---S-----SS-----S----------------------S--S------------------S--S-S-S-----------
-S--------S-----S--------SS-------------------------SS---------S--S---S---------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------S---------------
----------------S--------------------------------------------S------------------
------------------S-S-----------------------------------------------------------
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------------------------------------------------------------------S-------------
-------------------------------S-----------------------SSS---S-S----------------
--------------------------------------------------------------------------S----S
---------------------------S--------S------------------------S------------------
---------------------------------------------------------------S----------------
---------------------------------------------------------S----------------------
----------------S------------------------SSS------------------------------------
----------------------SSS-S--S--SS-SS-----S-------SS----------------------------
------------------S----------------------------------------S-S-----------------S
--------S---SSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
--------------------S-S------------------S--------------------------------------
-----SSS-SSSSSSSS---S-S-SSSS---------------------------SSSSSS----S--------------
--S---SSS-SSSS--SSSSSSS-SS-SS----S-S--S---SS-------S-----S----------------------
------------------------------------------------------------------------------S-
---------------------------------------------S-----------S----------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------S---S-------
--S-----------------------------------------------------------------------------
--------------S---------------------------S--------S----------------------------
------------------------------------S------------------------------------S------
-------------------S-------S--SS--S-----------------S------S--------------------
----------------------S--------SSSS----------------------------------S---
>forward_785
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---------------------------------------------CGGCCCGGTTCATTTGTTTT---------------
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>reverse_1773
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------------TGTCTGTGCCTTGCTTGTGA------------------------------------------------
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