>input_sequence_75596
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----------------------------------ATGGGCAAGATGCGCGCGCTCTTCTCCCGCAGCCGCAGCGGCGGCG
GCAGCCGGCGCTCCTCCTCCTCCAAGTCGTCGTCGATGCCGCCGTCGCCCGCGCGCTCGCCCTCTGTGCGGGAGGACGAG
ATGGAGCGCGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCAGGATCTCGCGGGCCGAGCTGGCGGCGCTCTTCGAGAG
CGTGGGCCACGCGGTCACGGACGACGAGGTGTCCCGCATGATGGAGGAGGCCGACTCGGACGGCGACGGCTACATCAGCC
TCGCCGAGTTCGCCGCCATCAACGCCGCGCCCGACGCCGCCGTCGAGGAGGACCTCCGGCACGCCTTCCGCGTCTTCGAC
GCCGACGGCAACGGCGTCATCTCCCCCGCCGAGCTCGCGCGCGTGCTGCGTGGCCTCGGCGAGGCCGCCACCGTCGCGCA
GTGCCGCCGCATGATCGAGGGCGTCGACCGCAACGGCGACGGCCTCGTCTCTTTCGACGAGTTCAAGCTCATGATGGCCA
ACGGCAAAGGATTCGGCCTCGCCCAGGGGAACGTCCGCGCCTGA------------------------------------
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>chr1B_1_TraesCS1B01G250900
ATGCTCGCCACGCAAAGAAGCGATCGACACGCCGCGCGTCTGCAGCGGCCTCGCCGTTGGTGTAAACGACGGGCCGCTCC
TTCCCGTCGTCCCGTGCAGTCATGTCTCGCAACCAATCCAT------GACGACGA-------------------------
---CGCCACCTCCTCCCCCGTCGTCTCACAC-----------CCACCACCAACGGGGCCCCGGCCCCCGGTTTCGGGGGC
ACCAGCCGAGCGCGACGCGACCCACAGATCCCAGACCCCAACGCGCGGAGGGCCTCCACGTCGCGCCCGGACCGCGACGC
GGCAGCTAGCCAGAGAGCGTACGGAGCACCTAGC-------------GCCCGGCAAAACGCGACAGAGAGAGCCCTGGTG
GCCG-----------CTGC-----------GCCGGCCTCGCTCACGGTCGCGATCATGGCCACGTC--------------
-------GGTCTGGACGCGTACGGCCGATTTTTC-ACCGCTTGATTCGTTTCGT-AAAAGGTCGTCGCGGCGCCGCCGAT
GCTTTGCTGCGTGTGACAAACGACGAGGCTCG----ACGACTTGGCTTGCACCGCACGCGTGGTCGTTCGCGCCGCGGTA
AAGAAAGAAAGAAAGAACAAAAAAG-CAGAGGAGTCCCGATAGGATAGGTACCGCCACCGCAGCTGTACGCGCTCCCGCC
GCAAAGCTCCAGCCGGTAGTCGGTATTCCCCCGC----CCCCGCCGCAAAAGCAGGGGCGC-------------------
----CATGCCATGGCATCCCTGTCCCTATCCGTATGGGAG----CAAAACCCAACGGAAAAGACGCGCAAACAACTCCGT
CCG----------AAAGGTTAGGCGTCGGGAAGGCTCCGGACCCC-GCTGGCCCCCACCTGTCAGCCCCGCCGCCGCTCA
CGCGCAACCGAATCCTCAACGGCAGCAACAGCCCAAAAACCGCGTCCT-CCTTCCCTCCCTCCTATAAGTACGCCCCGCC
CCCCAAGCTCCAGA---TCCTCAACCCGCCTGTTAACCTCACAACATCATCCGATCCAAACCTCCCACTTGATCGCGCAG
CGACAGCACCGCCACCACATCCATCTCCCTCTCCATGGGCAAGATGCGCGCGCTCTTCTCCCGCAGCCGCAGCGGCGGCG
GCAGCCGGCGCTCCTCCTCCTCCAAGTCGTCGTCGATGCCGCCGTCGCCCGCGCGCTCGCCCTCTGTGCGGGAGGACGAG
ATGGAGCGCGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCAGGATCTCGCGGGCCGAGCTGGCGGCGCTCTTCGAGAG
CGTGGGCCACGCGGTCACGGACGACGAGGTGTCCCGCATGATGGAGGAGGCCGACTCGGACGGCGACGGCTACATCAGCC
TCGCCGAGTTCGCCGCCATCAACGCCGCGCCCGACGCCGCCGTCGAGGAGGACCTCCGGCACGCCTTCCGCGTCTTCGAC
GCCGACGGCAACGGCGTCATCTCCCCCGCCGAGCTCGCGCGCGTGCTGCGTGGCCTCGGCGAGGCCGCCACCGTCGCGCA
GTGCCGCCGCATGATCGAGGGCGTCGACCGCAACGGCGACGGCCTCGTCTCTTTCGACGAGTTCAAGCTCATGATGGCCA
ACGGCAAAGGATTCGGCCTCGCCCAGGGGAACGTCCGCGCCTGAACC----TCAAGGCGTGCACTCGGCTCCCGCTTG--
---TTCCTTCATTCTTTTGCGAGACCGTGTAAATACGCCCGACGACGACCCACCGCGAAATACTTACTACTCTACG----
------TATTAGCTAGTCGCAGATCACACGAACATTATGGGTGTGCCATTAATTTTGCTGTATATATA-------TCGGA
ACTGCTGCATCGACACTGAAAAACCAGCTCCATGTCACATGTCGATTTTTATGTCAGCTTGTGTATTTGGCGTCAGATTT
TCACTTCTGC----TCATCACATAATGTCCTTGAGTCT--------CGTA--------GTATAATGCTTCTGCTTTCTGC
AGTTCTATGTCAAATTATATCTTCAACACCCGGCC------------------------------------TCATGTGA-
ATATACGAATCTGTATATGAAAGGGACATG-TCGATGTGACCCAGGCAGGCTCGCTGCCGTTGA-TTCGTCAAGACAATC
ATTCTGCCCGAGTAGCGTGAACAACAAAACCTCAAGCTGTAGCCCAAACTTGCAATACCTCTGATGAAATTGACAGTCGA
GCTAAAGGCTGCAGTTCTATAAACAATGACACGACGCCAAGAATCTAATTCCATGTTGCGCAAAACAGAACAAAAAAGAA
TCTAAATTCCATGTATTGTTTATAATCCGTTTTGCTAAAGAACATCTAGATTATTCTTGTTTATTCGTAACATAAGATTT
GCGTGCATCGGTTTTTGCCCGGTTTTCGAAAAAAAGATTTGCGTGCTTGTCGAACAGGTGGAGTTTACTAGTGGATCTGA
GTGATGACTGGGCGGTGAAGATGATCGTATGGAATACACGAACATGATTTTTTACTATGAAAAATGTAGGTGCTGTGGTG
C------AAGGTTGTAGACTTGTAGTACCCCCGACAATTAATGGGTCATTGGCCCTGAGCTTCCGGAGTTTACCTGTT--
-TGGATAGACGGTTTGATGCTGATAGTGCATCAGCAACAAATTGATGGATACCAACAATACCGGAGTACGCATGATACCG
CGTCCGAAAAAGAGGGAA
>chr1D_1
ATGCTCGCCACGCAA----GCGATCGACACGCCGCGCATCTGCAGCGGCCTCGCCGTTGGTGTAAACGACGGGCCGCTCC
TTCCCGTCGTCCCGTGCAGTCATGTCTCCCAACCAATCCAT------GACGACGACGACGACAGACACCTTGACAGGACG
GGGCGCCACCTCCTCCCCCGTCGTCTCACAGTAGACTCACAGCCACCACCAACGGGGTCCCGGCCCCCGGTTTCGCGGGC
ACCAGCCGAGCGCGACGCGACCCACAGATCCCAGACCCCGCCGCGCGGGAGGCCTCCACGTCGCGCCCTGACCGCGACGC
GGCAGCTAGGCAGAGGGCGTACGGAGCACCTAGCTACTAGTGCTAGCGCCCGGCAAAACGCGACAGAGAGAGCCCTGGTA
GCCG-----------CTGCGGGTCGCCCGGCCCGGCCTCGCTCACGGTCACGATCATGGCCACGTC--------------
-------GGTTCGGACGCGTACGGCCGATTTTTCCACCGCTTGATTCGTCTTGTAAAAAGGTCGTCGCGGCGCCGCCGAT
GCTTTGCTGCGTGTGACAA---ACGACGATGCTTTCACGACTTGGCTTGCACCGCACGCGTGGTCGTTCGCGCCGCGGTA
AACAAACAAAGAAAGAAAACATATACCAAAGGAGTCCCGATAGGGG-----CCGCCACCGCCGCTGTACGCGCTCCCGCC
GCAAAGCTCCATCCAGCAGTCGGTATTCCCCCGC----CCCCGCCGCAAAAACAGGGGCGCGCGTCCAGGCATGGCAG--
-----------------------CCCTATCCGTATGGGAGCAACCAAAACCCAACGGAAAAGACGCGCAAACAACTCCGT
CCGCGCCACTCCGAAAGGTTAGGCGTCGGGAAGGCTCCGGACCCCCGCTGGCCCCCACCTGTCAGCCCCGCCGCCGCTCA
CGCGCAACCGAATCCTTAACGGCAGCAACAACCCAAAAACCGCGTCCTCCCTCCCCGCGCGCCTATAAGTACGCCCCGCC
TCCAAC-ATCCAGATCCTCATCAACCCGCCTGTTAACCTCGCAACACCATCCAATCCAAACCTCCCACTTGATCGCGCAG
CGACACCACCGCGATATCCCTCTCCCG----TCCATGGGCAAGATGCGCGCGCTCTTCTCCCGCAGCCGCAGCGGCGGCC
GCGCCAGCCGCTCCTCCTCCACCAAGTCGTCGTCGATGCCGCCGTCGCCCGCGCGCTCGCCCTCTGTGCGGGAGGACGAG
ATGGAGCGCGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCCGGATCTCGCGGGCCGAGCTGGCGGCGCTGTTCGAGAG
CGTGGGCCACGCAGTCACGGACGACGAGGTGACCCGCATGATGGAGGAGGCCGACGCCGACGGCGACGGCTACATCAGCC
TCGCGGAGTTCGCCGCCATCAACGCCGCGCCCGACGCCGCCGTCGAGGAGGACCTCCGGCACGCCTTCCGCGTCTTCGAC
GCCGACGGCAACGGCGTCATCTCCCCCGCCGAGCTCGCGCGCGTGCTGCGCGGCCTCGGCGAGGCCGCCACCGTCGCGCA
GTGCCGCCGCATGATCGAGGGCGTCGACCGCAACGGCGACGGCCTCGTCTCCTTCGACGAGTTCAAGCTCATGATGGCCA
ACGGCAAAGGATTCGGCCTCGCCCAGGCCAACGTCCGCGCCTGAAAGACGTACGCGCAGTGCAC----CTCCCGGTTG--
---TTCCTTCATTCTTTTGCGAGACCGTGTAAATACGCCCGACGACGACCCACCGCGAAATACGTACTTACTACGTACTC
CTACTCTATTAGCTAGTCGCAGATCACACGAACATTATCGGTGTGCCATT-ATTTTGCTGTACATATATAATGTATCGGA
ACTGTCGGATCGGCACTGAAGAATAATCCTC------CATGTCGATTTTTATGTCAGCTTGTGTATTTGGCGTCAAAATT
TCACTTCTGC----TCATCAGATAATGTCCGTGAGTCT--------CGTAGTATAAATGTATAATGCTTCCGCTTTCTGC
AGTTTTATGTCAAAATTCTATTACAACTCCCGGCCGGATGACTTTGTGAAGTTATGAAGGGGGAGCGAGCTTCATGTGA-
ATATACGAACCTGTAAATGAAAGGGACATGTTCGATGTGACCCAGGCTGGCTCGCTGCCGTTGTT--------GACAATC
ATTCTGCC-GAGCAGCGTGAACAACAAAACCTCAAGTTGTAGCCCAAACTTGCAATACCTCTGATGAAATTGACATTTGA
GCTAAA-GCTGCAGTTCTAAAAACAATGACACGACGCCAAGAATCTAGATTCCGTTAA----------------------
--------------------------------------------------------TTTTATACTCGTATCATAAGGTTT
TACC---------------------------------------TGTTTATTGAACAGGTGGAGTTTACTGTTGGATATGA
GTATTGATTGACGATGACTTGGTACA--------------------ATTTTTTACTGTCAAAAAT--AGGTGCCCTGGTG
CAATTGTAAGGTTGTAGACTTGTAGTACCCCCGACAATTAATGGCTCAATGGCCCTGAACTTTCGAAGCTTACCGGTACT
ATGGATAGACGGTTTGACACTGATAGTGCATCAACAACAAATTGATGGATACCAACAATACTGGAGTACCCATGATACCG
CGTCCGAAAAAAAGGGAA
>chr1A_1
ATGCTCGCCACGCAA----GCGATCGACACGCCGCGCATCTGCAGCGGCCTCGCCGTTGGTGTAAACGACGGGCCGCTCC
TTCCCGTCGTCCCGTGCAGTCATGTCTCCTAACAAATCCACAACGACGACGACGACGACGACATGGC----GATAGGACG
TGGCACCACCTCCTCTCCCGTCGTCTCACAC-----------CCACCACCAACGGGGCCCCGGCCCCCGGTTTCGCAGCC
ACCAGCCGAGGGCGACGCGACCCACAGATCCCAGGACCCGCCGCGCGGACGGCCTCCACGTCGCCCCCGGACCGCGACGC
GGCAGCTAGCCAGAGAGCGTACGGAGCACCCAAGCTAGTGC-CTACCGCCCGGCAAAACGCGACAGAGAGA--CCTGGTA
GCCGCTGCGGGTCGCCTGC-----------CCCGGCCTCGCTCACGGTCGCGATCACGGCCACGTAGGCCCGGCACAGTG
AGCAAGTGGTTTGGACGCGTACGGCCGAATCTTC-ACCACC----TCGTATTGTAAAAAGGTCGTCGCGGCGCCGCCGAT
GCT-----GCGTGTGACAA---ACGAGGCTTG----ACGACTTGGCTTGCACCGCACGCGTGGTCGGTAGTT-CGCGGTA
AAGAAAGAAACAAAGAAA--------CAAAGGAGTCCCGGTAGGATAGGTACCGCCACCGCCGCTGTACGCGCTCCCGCC
GCAAAGCTCCAGCCGGTAGTCGGTATTCCCCTGCTCCTCCCCGCCGCAAAAACAGGGGCGCGGGTCGCGTCCGCCATGCC
CTGGCATGGCATGGCGGCCCTATCCGTA------TGGGAG----CAAAACCCAACGGAAAAGACGCGCAAACAACTCCGT
CCGCGCCACTCCGAAAGGTTAGGCGTCGGGAGCCTTCCCGACCCCCGCTGG-CCCCACCTGTCAGCCCCGCCTCCGCTCA
CGCGCAACCGAATCCTTAACGGCAGCAACAACCCAAAA-CCGCGTCCT-CCCGCTCTCCCTCCTATAAGTACGCCCCACC
TCCAAC-CTCCAGA---TCCTCAACCCGCCTGTTAACCTCACAACATCATCCAATCCAGACCTCCCACTCGATCGCGCAG
CGACAGCACC---------CTCTCCCG----TCCATGGGCAAGATGCGCGCGCTCTTCTCCCGCAGCCGCAGCGGCGGCC
GCGCCAGCCGCTCCTCCTCCACCAAGTCATCGTCGACGCCGCCGTCGCCGGCGCGGTCGCCCTCTGTGCGGGAGGACGAG
ATGGAGCGCGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCAGGATCTCGCGGGCCGAGCTGGCGGCGCTGTTCGAGAG
CGTGGGCCACGCGGTCACGGACGACGAGGTGTCGCGCATGATGGAGGAGGCCGACTCGGACGGCGACGGCTACATCAGCC
TCGCCGAGTTCGCCGCCATCAACGCCGCGCCCGACGCCGCCGTCGAGGAGGACCTCCGGCACGCCTTCCGCGTCTTCGAC
GCCGACGGCAACGGCGTCATCTCCCCCGCCGAGCTCGCGCGCGTGCTGCGCGGCCTCGGCGAGGCCGCCACCGTCGCGCA
GTGCCGCCGCATGATCGAGGGCGTCGACCGCAACGGCGACGGCCTCGTCTCCTTCGACGAGTTCAAGCTCATGATGGCCA
ACGGCAAAGGCTTCGGCCTCGCCCAGGCCAACGTCCGCGCCTGAACCAACCTCAAGACGTGCACTCGGCTACCGGTCGCT
TGTTTCCTTCATTCTTTTGCGAGACCCTGTAAATAC--------------CACCGCCAAATACTTACTACGTG-------
---CTCTATTAGCTAGTCGCAGATCACACGAACATTATCGGTGTGCCATT-ATTTTGCTGTGTATATATAATGTATCGGA
ACTGTCGGATCGACACTGAAGAATAATCCTC------CATGTCGATTTTTATGTCAGCTTGTGTATTTGGCGTCAGATTT
TCACTTCTTCTCATTCATCAGATAATGTCCACGAGTCTCGTAGAGTCGTA--------GTATAATGCTTCCGCTTTCTGC
AGTTTTATGTCAAAATTCT------ACTCCCGGCCGGATGACTTTGTGAAGTTATGAAGAGGGAGCGAGCTTCATGTGAG
ATATACGAACCTGTAAACGGAAGGGACATG-TCGATGTGACCCAGGCTGGCTCGCTGCCGTTGTTTTCGTCAAGAGAATT
ATTCTGCCCGAGTAGCGTGAACAACAAAACCTGAAGTTGCAGCCCGAACTTGCAATACCTCTGATGAAATTGACGGTTGA
GCTAAA-GCTGCAGTTCTAAAAACAATGACACGACGCCAAGAATCTAGATTCC---------------------------
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>SNPs
---------------SSSS------------------S------------------------------------------
----------------------------S---------------------------------------------------
---------------------------------------------------------------------------S----
---------------------------------------SS--------S------------------------------
-------------------------------------------------------------------------------S
------------------------------S-------------------------------------------------
----------S--------------------------------------S-S----------------------------
-------------------SSS--------S-------------------------------------------------
-----------------S-S-S-SS---S--------------------------------S------------------
---------------------------------------------------S----------------------------
--------S------SS----S----------------------------------------------------------
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----------------S-------------S---------------------S---------------------------
S--S-SS---------------------------------------------S---------------------------
------------S-SSS-SSS-SS-SSSSSS------------------------------------------------S
--SS-S-S------------S-----------------------------------------------------------
-----------------------------------------------------------------------S--------
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--------------------------------------------------S-----------------------------
---------------------------------------------------S----------------------------
---------------------------SS---------------------------S-----------------S-----
----------------------------------------------------------------------SSSSSS----
--------------------------------------S-----------S-----------------------------
----SS-S------------S--SS-S-SS-SSSSSS-------------------------------------------
--------------------S---------S---------------------------------------S---------
----S---------S-SSSSS-S----S----------------------------------------------------
---------S-----S-------------------------------S---------------S----------------
------------------------------------S----------------------------------------S--
------S------------S---------------------------SS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-S--S-----S------S---
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S-S------------------SS-----S---
--SS---S--SSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSS----------S-S------SS------SS-----
--------------------------------------------S---S---------S---S--S--S-----S--S--
-----------------SS--------------S---------------------------S-------S----------
-----------S------
>forward_1151
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-----------CCACCACATCCATCTCCCTC-------------------------------------------------
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>reverse_2518
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-------------------------------------TTTGCGTGCTTGTCGAACAG-----------------------
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