>input_sequence_75589
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----------------------------------------------------------------ATGAAGACGAAGACGA
AGAAGGGAGGGACGGGGAGGAATAAGAGGAACGAGACGAAGCTCATCGAGGACCCGGCCAAGCGGCAGGTGGCCTTCTCC
AAGCGCCGCCCCACGCTCTTCGGCATGGCCGGCGACCTCTCCGCGCTCTGCGGCGTCCACGTCGCCGTCGTCGTCTTTTC
ACGCTCCGCGCGCGGCAACGCCTACGCCTTCGGCAGCCCCTCCGTCGACGCCGTCCTCCGACGCT------ACCA-----
----CGGCAACGTCCAAGATGATGACGACCATGGTG---------AT------GACGATGACGATGCTGGCGCTCTGGCG
GGGTTGCGGAGCGAGCTGGACGACACCAAGGCGCGTGTGGAGGCGGAGAAGAAGCGCATGAAGAAAGTCGAGGCGAACGT
GGAGCGGGCCATGGCGGCAAGGTCAACTGCGCTGTGGTGGCAGGCCGACGTCGAGGCTCTCGGGGCAGCGGAGCTGCCAG
AGTTCGAGACGGCGCTCCGGCGGCTCAGGGACACCCTCCTCCGCCGGGTCGACGCGCTGCAGCTACCTCTAGCCGCTGCA
CCGCCTGCCTACATGAACATGTAG--------------------------------------------------------
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>chr1A_1_TraesCS1A01G013100
TTTTGCCGAGTGTTACACTAGAAAACCCTCCAAATTTGCATAGTGTGGGACTTTTGCCGCCACAGGTCCACCTTATCTCG
AGTGGCCTTAGGGCCATGGAGGCACATTGGACCTCGGTCCTTGCCGGTGGGAGGGTTCCTGTTCTGGTTTTAGTTTTTTT
AAAAGTT--GATTAGGGCTTGTGTCCCGCTCAAGAAGGTGTGGCGGCGGAGGCGGCTCCCTGAAGATGGAC---TAAGGT
CCTCGCCGCCTTGCCCCCGTCTCAACGGTGCGTCCAGTGTCATCGGAGGATGTGTGGACGTGTGTCTCTGATGAATGTTG
TGGGATTCGATTGGTATTGGTCTTCGATGGATCACATTAGATACAGTCTTTGTT----------CGTGTGTCTACATGTT
GCATCCTTTCGATCAACGTTTCTTTTCATCAACGACGGTTGTTTTTCTGGTGCGCTAGTCCGGTAGGGCCTTAATACGAC
A-CTCCGCGACTGTCTG-TATAATAAGTTTTACCCAACTTCAATGAGGGAGGGGCGATGACGGCGGCACGCCTTCGGCTC
ACTTCAGTCTTTGTAGTCATCGCTAGGCGGTTTAGTTTTGGTGTTCCTTATGCTTGCGCGATGGATTGATCCTAAGTTTA
TTCCCGCAAAAAGAATTGATCCTATGTTTTTCCCGCAAAATAGAAAGAATTTTGCCGAGTGTGTTTTGGAATGCACTAGA
CAAAAGCTCCGTTTGCCAAATGCCTTGGAAAAAACACTCGACAAAAGGTCGGATCACGTACAACTAGCAGTCCAAACTCC
AAAGTTTACACCTCAATAGGATTTGAAGGAAGGTTCTTGGAACCTTCGTTTCAGATA---ATCATATATGGAAGCTAATC
CCACAAGGATAGAATTGATCCATACGTATTAATTGCATCTCCATATATAAGATAGTACCAAGGGTACCTTTCCCCTACTA
CACCGTAAACCAGTCGATCGAAGCTAAGG----ATCTGCATCTTCCTGCCGACCATCCATGGCGATGAAGACGAAGACGA
AGAAGGGAGGGACGGGGAGGAATAAGAGGAACGAGACGAAGCTCATCGAGGACCCGGCCAAGCGGCAGGTGGCCTTCTCC
AAGCGCCGCCCCACGCTCTTCGGCATGGCCGGCGACCTCTCCGCGCTCTGCGGCGTCCACGTCGCCGTCGTCGTCTTTTC
ACGCTCCGCGCGCGGCAACGCCTACGCCTTCGGCAGCCCCTCCGTCGACGCCGTCCTCCGACGCT------ACCA-----
----CGGCAACGTCCAAGATGATGACGACCATGGTG---------AT------GACGATGACGATGCTGGCGCTCTGGCG
GGGTTGCGGAGCGAGCTGGACGACACCAAGGCGCGTGTGGAGGCGGAGAAGAAGCGCATGAAGAAAGTCGAGGCGAACGT
GGAGCGGGCCATGGCGGCAAGGTCAACTGCGCTGTGGTGGCAGGCCGACGTCGAGGCTCTCGGGGCAGCGGAGCTGCCAG
AGTTCGAGACGGCGCTCCGGCGGCTCAGGGACACCCTCCTCCGCCGGGTCGACGCGCTGCAGCTACCTCTAGCCGCTGCA
CCGCCTGCCTACATGAACATGTAGCGGCTAATTAGCGATACCTTACC-ACATCTTCGATCTTGTCTCAAACGAAAAGTAC
GGATGCATGCATGCATGCATTATGTGTATGATGCTCGCAATATCGAGTACAACCATTAACTTCACGAAGCATTTTGTTTT
TTT----TATATGGAAGGTCCGATTTTGTTTTTTGCCCATAATGTCATGTCATGGATGTCATTTCTTCATAAAAATTCAC
ATCTTGGATAGACAACTGTACCATGTTTCTACAAAATAAGTTCCAAATTATATGGAAACCTCATGAGTAATCGACTCCAA
ATCCAAATCAGATCCGATGACGTGCGACTTACTATAGGTCAAGCGGAGAAGTCGCGATGGACGATCTGAAGAAATCACGG
CGAACCATATATATGTACATACTCATGACCACCCAGCTCCCGGCAGCTTGCATGAGCAGCAGCCGCGGTGACCATGGACG
GCCAGCGGCTTGCAAGAGAGGCGATGGTGACGGCCACTCTCGCCTGACGCTGCTCCAGACACGATTACGTGCTGGTTCCG
ACCGCACTCGCCTGCTACGGAGCTGTCCCCGCCGACCCCGACTACTGCTCCGGGGCTCCCGGCGACCCCGGCGGCGAGGC
TGAAAGGTCGACGTGTGACTGCTCATTGTCATGGTTACCGTGCTCATGTCGGGCTCCCGACCACGAAGATGAATTTGCCC
CTGTCCTCCCGGGTGGTCAACAATCTCCTAATACGATCTAGCCATTAGCTGAGAGAAGAGAGGGGACGCGGGAGAGCTAG
CTAAATAATAGGATCTGAGCTTACAACAAACGACATTGCATGCATGCACAATCACGTTCAACACATATAAGGTAAGTGGC
CTATAGCGAACCAATCTCTGGTTGAGATGGTTAGGTGGACAGTGGTATCCCCAACCCACTAGGGTTCAAATCCTGGTGCT
TGCATTTATCCTGGATTTATTTTAGGAATTTCGGCGATACGCTTTCAGTGGGAGGAGACGTTCCCGTCG
>chr3D_56
-------------------------------------------------------GCCGCCACAGGTCTACCCCGTCTTC
-GTGGCCTTA-GGCCATGGATGCGCGGTGGGTCTCGGTCCTTGCCGACGGGAGGGCTCCAGATCTGTTTTTAGTTGTTTT
TTTGTGTTCGTTTAGCGTTCGTGTCCTGCTCAGGAAGACGA---GGCGGTGGCGGTTTCCTGAAGATGGAATATTAATGT
CCTCACCGTCTAGCCCCCGTTCCGGCGGTGTGTCAAGCCTCGTTGGAGGGCGTGTAGAGGTGTGTCTCCAGCGGATCTCG
TGCAATTCGGTCAGCGTTTGTCTTCGGCGGATCCGTTTGGATCTGGTCTTTGTTCTTCTGCGTCCGTGTGTTTGCAGGAT
GAATCCTTTCGATCAACGTTTCACTTCATCAGCGACAGTTGTTATTCTGGTGCGCTGGTCCTATGGGGCCTTAGCACGAC
AACTTCCCGACTGTCTATTACAATAAGGTTTGCCCGGCTCTAATGAAGGAGGGGCGATGACGGCGGCACGCCTTCGGCTC
GCACCAGTGATTGTAGTCGTCGCTAG------------------------------------------------------
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>chr1D_786
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--AGTTTACACCTTAATGTGATTTGAAGGAAGGTTCTTGGAACCTTCGTTTGGGATA---ATCATATATGGAAGCTAATC
CCATAAGGATAGAATTGATCCATACGTATTAATTGCATCTCCATATATA-GATAGTACCAATCGTACCTACTACCAAACC
CATCGA-------TCCAAGCTAA--------GCATCTGCATCTTCCTGCCGACCATCCATGGCGATGAAGATGAAGACGA
AGAAGGGAGGGACGGGGAGGAAGAAGAGAGACGAGATGAAGCTCATCGAGGACCCGGCCAAGCGGCAGGTGGCCTTCTCC
AAGCGCCGCCCCACGCTCTTCGGCATGGCCGGCGACCTCTCCGCGCTCTGCGGCGTCCACGTCGCCGTCGTCGTATTCTC
CCGCTCCGCGCGCGGTAACGCCTACGCGTTCGGCAGCCCCTCCGTCGACGCCGTCCTCCGACGCT------ACCACCAAG
ATGGCGGCCACGACGAGGATGACGACGCTACCGCTCTTGCCGTCCAT------GGCGATGACGATGCTGGCGCTCTGGCG
GCGTTGCGGCGGGAGCTGGACGACACCAGGACACGTGTGGAGGCGGAGAAGAAGCGCATGAAGGCCGTGGAGGCGAACGT
GGAGCGGGCCATGGCGGCAAGGTCAACGGCGCTGTGGTGGCAGGCCGACGTCGAGGCGCTCGGGGCGGCGGAGCTGCCCG
AGTTCGAGACGGCGCTCTGGCGGCTCAGGGACACCCTCCTCCGCCGGGTGGACGCGCTGCAGCTACCTCTAGCCGCTGCA
CCGCCGGCCTGCATGAACATGTAGCGGCTAATTAGCGGTACCTTTACGACATCTTCGATCTTATCTCAAACGAAAAGTAC
GGATGCATGCAAGCATGCATTATGTGTATAATCCTCGCAACATCGAGTACAACCATTAACTTCACGAAGCATTTTGTTTT
TTTTTAATATATGGGAGTTCCGATTTTGTTTTTTGCAC-----GTAATGTCATGGATGTCATTTATTCATAA--------
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>chr1B_801
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-----------------AGGATTTGAAGGAAGGTTCTTGGAACCTTCGTTTCAGATAATCATCAAATATGGAAGCTAATC
CCACAAGGATAGAATTGATCAATACGTATTAACTGCATCTCCATATATA-GATAGTACCAATCGTACCTACCACCAAACC
CATCGA-------TCAATCAAAACTAAGCATGCATCTGCATCTTCCTGCCGAGCATCCATGGCGATGAAGATGAAGACGA
AGAAGGGAGGGACGGGGAGGAAGAAGAGGGACGAGATGAAGCTCATCGAGGACCCGGCCAAGCGGCAGGTGGCCTTCTCC
AAGCGCCGCCCCACCCTCTTCGGCATGGCCGGCGACCTCTCCGCGCTCTGCGGCGTCCACGTCGCCGTCGTCGTCTTCTC
CCGCTCCGCGCGCGGCAACGCCTACGCCTTCGGCAGCCCCTCGGTCGACGCCGTCCTCCGACGCTGCCACCACCA-----
----CGTCGGCGGCCAAGATGAAGATG---CCGCTCTTGCCATCGTCCATGGCGACGATGATGATGCTGGCGCTCTGGCG
GCGTTGCGGCGGGAGCTGGACGACACCAAGGCGCGTGTGGAGGCGGAGAAGAAGCGCATGAAGGCCGTGGAGGCCAACGT
GGAGCTGGCCATGGCGGCAAGGTCCACGGCGCTGTGGTGGCAGGCCGACGTCGAGGCGCTCGGGGCGGCGGAGCTGCCCG
AGTTCGAGACGGCGCTCCGGCGGCTCAGGGACACACTCCTCCGCCGGGTCGACGCGCTGCAGCTGCCTCTAGC-------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S---SSS---SS
S---------S---------S--S-SS---SS--------------SS-------S---S-S----S--------S----
SSSSSS----S----S-S-S------S-----S----SS-SSSS-----S-----S-S------------S------S--
----S---S--S--------SS-SS-----S---S--SS--S-S-----SS----S--S---------SSSS-S--S-S-
--SS-----S-SS-SS--S-------SS-----SSS--S---SSS--------------------------S-S--S-S-
-S--------------------SS-------S----S------S------------S----SS-S--------SS-----
----S-S---------S---S------S---S---SS--SS-----S---------------------------------
S-SS----SS--------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-----------S------------------------------------------------------------------
-------------------------------------------------S-----------SS------SS-S--S-SSS
--S--SSSSSSSS--S---S--S-----S------------------------------------------S--------
----------------------S------S------S-------------------------------------------
-----------------------------------------------------------------------------S--
S-------------------------------------------------------------------------------
--------S---S---------S----SSSSS-S-S--------------------------------------------
-S-------S-S---------------------------------------------------SSS--S-----------
---------------------------S-----------------------------S--------S-----------S-
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-----S----S--------------------------S------SS----------------S-----------------
-----------S-----------------S--S-------S---------------------------------------
--------------S--S------------------S-SSSSS--S------------------S-------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_747
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-------TCCGTTTGCCAAATGCCTTG-----------------------------------------------------
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>reverse_1972
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---------------------------------------------------TCGCGATGGACGATCTGAAG---------
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