>input_sequence_75537
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--------------------ATGGCCGCGCAGGAGGGCGCCGCGGGGACGGCGAACCAGGTGGCGAGGGTGCGGTACGGC
GACGTCGACGACAGCAACTTCATGCTGCGCGGCCGCGCCGTGCCGCTGCTGGCCGGCCTGCTCGCGCTCCTCGTCGCCTT
CGTCGCCGTCTGCCTCTACCTGCGCTGGGCGTGCGGCCGCCGCCGCGCCCGCCGCGACGCCGACCGCGAGGCCTCGTCCT
CGTCCGCCGCGGCGTCGCCCGTGCCCGGCCTCGACGCCGACGCCATCAATGGGCTGCCCGTCACGCTCTACAGCCCGCCC
GCCTCCTCGCCGGTGCGCTCCCCTTCTCGGCAGAAGGGCGACGGCGGAGACGAGGAGCAGGCGGC---------------
GGAGTGCTCGATCTGCATCAGCGCGCTGGTGGCCGGGGACAAAGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACC
CGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCAGCTGCCCGCTCTGCCGCACCCTCCTCCTCCCCGCCGCCGCCGTC
GCCAAGCCGGTCGACGTTGTCAACGGAGGCGACCCGCCGCCGGTGTGA--------------------------------
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>chr4B_1_TraesCS4B01G162300
TGTGTGGTGAAATGTTTAAATACTAGCAAACCCTAGGAGCACGTCCAAGACCGCCGGCAACCACGAAGAGAGACGGAGAG
GGGCATGGATAAGC-GGCCGAGAAGAGGTTGTAATCTTGTAGATTCTCCCGAGTCACCTGGGCGGGGGCAACTCGCCGAC
GAACCCTCGAAGCAGATGGCCACC--------AGCCCGCAGGAGTAGGACGGCCAATT-CACCATCGGCAATGT----AA
TTGTCACAACTTCCAGCCACAAATTCGCCAAAAAAG----GAAATAATTGCCAGTCAAAGATCCCCGTAGAAAATATTCG
CCGCTGAAAAATCGCAAGCACTGTGCAGTTCAAAACCATTGGTCTGAATGCATGCGCGCAGCTCGCCTGC--------CA
CAAGTCGTCCATCCCTTCCCCCGTGGATCGTGACCAGCGATCCGAACGGGAGAATATTACACCTCCCGGCAAATTAAGAA
GAAGAATATTGCACCCCCGAGTC-------CACGGCGACAGCACAGTGCGGCATGCCGCCGTGCGTGCCGGCTCGATCCA
GTCACGCCCAAGTTGGCAGTTGCCCATCAGCTCGCGCCTCGCGGCTAGCTTCCGG-------CTGTGCCCCACCGGCCGG
AGCCATTTTTCCAAGCTTAAAAGGGACGGCCGAGGACTTTGAAATTTTAGAAACCACGCTCGTCCCCCATCCAGCAGCTC
ACTCGCTCTCCGGTCGATCGCTCTCTCGCCAGGCCGAGCCACACCGCCACTTGCCACGATATTTCCTCGCTCGCTTGCTT
GCTCGCCC--------GCTCCTTCGACCGATCGCCTGCACCACAAGCTGGCCGGCC----GGCAGCGCGCTCGGTCTCCC
ATGCGCTGCCTTTGACTACCGCAGCTCCACGAGTCCGCACCCCGCACATGGCGTGAGAGCGTGGGCTAGCTGCTGCGTAG
CTGATTAGTCCAAGAAGTCCAAGCTCGTGCACGTTGAAGCTT--------GCGTGCGTGCGTGCAGAGTTCGTGAAGGGA
GAGGAAGGAAGAAACCTACTATGGCCGCGCAGGAGGGCGCCGCGGGGACGGCGAACCAGGTGGCGAGGGTGCGGTACGGC
GACGTCGACGACAGCAACTTCATGCTGCGCGGCCGCGCCGTGCCGCTGCTGGCCGGCCTGCTCGCGCTCCTCGTCGCCTT
CGTCGCCGTCTGCCTCTACCTGCGCTGGGCGTGCGGCCGCCGCCGCGCCCGCCGCGACGCCGACCGCGAGGCCTCGTCCT
CGTCCGCCGCGGCGTCGCCCGTGCCCGGCCTCGACGCCGACGCCATCAATGGGCTGCCCGTCACGCTCTACAGCCCGCCC
GCCTCCTCGCCGGTGCGCTCCCCTTCTCGGCAGAAGGGCGACGGCGGAGACGAGGAGCAGGCGGC---------------
GGAGTGCTCGATCTGCATCAGCGCGCTGGTGGCCGGGGACAAAGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACC
CGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCAGCTGCCCGCTCTGCCGCACCCTCCTCCTCCCCGCCGCCGCCGTC
GCCAAGCCGGTCGACGTTGTCAACGGAGGCGACCCGCCGCCGGTGTGACTCGTGAGCCAGAAGACAACGTGCTCGCACGC
CAAGTCGCCAACTCACCGAAGCATGACAAGCAGGCCCCACCTGTAAGCCACTTACTGCTACCTTGACCGCAAGAAAGCCC
GTCCCGGTTTAACAACAGAGCCAAATGAGCAATGTGGCTACCGTACCTGT-------CCCCGCGAGACGCGTCATCGCCG
GCCGGAAAGGCAGCGCCAGCTCTGCCATGGCACGACGGGAGCCGTTCTTTCGCAGGCCGGCC----GGCGTGGGGTCGCG
TCATCTCTCCGGCCACTTTTCTACCTTAAATTTTCTGTTCAAGCCTCCAAAGGGAAGGACAGTGGTGTAGGCTGTACATT
AAAATTATTTGTGCCATGAGTATTGTAGTGCCGTCACTGCGTACGCGGTGGCAGCTCAGTGGTGCCCGAGCTAATGGCAT
CTCGATGTGTACGTAGTTTATCAGCACTGACACGGGCAGCTCACCCTTAATTAAGTCCCGGGATCTCTCTGCTTGTCACC
ATCCTGATCGCGTTTGCGTATAGTAATCTGCACTTTTGGGGCAGCTCCCGTAAGTGTGTGCCTATCTAATGACTAATGGA
GCCGCGCTTTGCGAAAAGGTTGCGTCTCCGGACAACACCTCACCGTTTCTTCCTTCAACCGTCCCCTCTGGATCTCTTTC
GAGCGGCGC----AATTAGTGCGATGGATGGAGGATTGATTAGGCGACTAAAATTAGTACGATGGAGGATCCGGATCAGG
ACGTCCGTCTTCGTCTGGCTAAGCTAAGCTAGCTGTGCTTCTTACTCCATCGCACTACGTAGTGTGTACTACATGGAACA
GCAATGCTGTTTGGGT-GGGTTCGATTGATTGTTGGGGTTATCATGAACACCAGTGGCAGCGCCACGGCTAGAGCAC-TC
TGGATCTTTTTCGAGCGGCGCAATTAGTGCGCTGGAAGATTAGCTAGGAAACAACCGGACGTCTTAACATGATACGCAAT
GCTATATTAGTTTGCCGTGCTTAAT
>chr1D_28
---------------------------AAACCCTAGGAGCACGTCGAAGACCGCGGGCAACCACGAAGAGAG--------
GAGCCTGGATAAGCGGGCAGAGAAAAGGTTGCAGTCTTGTAGATTCTCTCGAGTCACCTGGGCGGGGGCAGCTCGCCCAC
GAACCCTCGAAACAGATGGCCACC--------AGCCGGCAGGAGTAGGACGGCCCATT-CACCCTTGGCAATGTACGTAA
TTGGCACAAATTCCAGCCATAAAATCGCCAAAAAAAGAGAGAAATAATTGCCAGTCAAAGATCCCCGTAGAAAACATTCG
CCGCTGAAAAATCGCAAGCACTGTGCAGTGCAAAACCATTGGTCTGAATGCATGCGCGCAGCTCGCTCGCTCGCTACATA
CAAGTCGTCCATCCCATCCCCCGTGGATCGTGACCAGCGATCGGAACCCGAGAATAT-----------------------
---------CGCACCCCCGAGTCCACAGTCCACGGCGACAGAACAGTGCGGCATGCCGCCGTACGTGCCGGCTCGATCCA
GTCACGCCCAAGTTGGCAGTTGCCCATCAG-------CTCGCGGCTAGCTTCCGAGTTCCGCCTCTGCCCCACCGGCCGG
AGCCATTTTTCCGAGCTTAAAAGGGACGGCCGAGGACTTTGAATTTTAA-AAACCACGCTC----CCCATCCAGCAGCTC
ACTCACTCTCCGGTCGATCGCTCTCTCGCCAGGCCGAGCCACACCGCCACTTGCCCCGATATTTCCTCGC----------
--TTGCTTGCTCGTTGGCTCCTTCCACCGATCGCCTGCGCCACAAGC----CGGCC----GGCAGCGCGCTCGGTCTCCC
ATGCGCTGCCTTTGACCACCGCAGCTCCACGAGTCCGCACCCCGCACATGGCGTGAGAGCGTGGG----------C-TAG
CTGATAAGTCCAAGAAGTCCAAGCTCGTGCACGTCGAGGCTT--------GCGT----GCGTGCAGAGTTCGTGAAGGGA
AGGGAAGGAAGAAACCTACTATGGCCGCGCAGGAGGGCGCCGCGGGGACGGCGAACCAGGTGTCGAGGGTGCGGTACGGC
GACGTCGACGACAGCAACTTCGCGCTGCGCGGCCGCGCCGTGCCGCTGCTGGCCGGCCTGCTCGCGCTCCTCGTCGCCTT
CGTCGCCGTCTGCCTCTACCTCCGCTGGGCGTGCGGCCGGCGCCGCGCCCGCCGCGATGCCGGCCGCGAGGCCTCGTCCT
CGTCCGCCGCGGCGTCGCCCGTGCCCGGCCTCGACGCCGACGCCATCAATGGGCTGCCCGTCACGCTCTACAGCCCGCCC
GCCTCCTCGCCGGCGCGCTCCCCAACTCGGCAGAAGGGCGGCGGTGGAGACGAGGAGCAGGCGGCGGCGGCGGCGGCCGT
GGAGTGCTCGATCTGCATCAGCGCGCTGGTGGCCGGGGACAAGGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACC
CGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCAGCTGCCCGCTCTGCCGCACCCTCCTCCTCCCCGCCCCCGCCGTC
GCCAAACCTGTCGACGTTGTCAACGGAGGCCACCCGCCGCCGGTGTGACTCGTCAGCCAGAAGACAACGTGCTCGCACGC
CAA--------CTCATCGAAGCATGACAAGCAGGCCCCACCTGTAAGCCACTTATTGCTAT------------AAAGCCC
GTCCCGGTTTAGCAACAGAGGCAAATGGCCAATGTGGCTAGGTAACTGGCCCCGGCGA-CGGCGAGGTGCGTCATCGCCG
GCCGGAAAGGCAGCGCCAGCTTTGCCATGGCACGACGGGAGCCGTTCTTTCGCAGGCCGGCCGGCGC-CGTGGGGTCGCG
TCGTCTCTCCGGCCACTTTTCTACCTTAAATTTTCTGTTCAAGCCTCCAAAGGGAAGGACAGCGGTGTAGGCTGTACATT
AAAATTATCTATGTCATGAGTATTGTAGTACCGTCACTGCGTACGCGGTGGCAGCTCAGTGGCTCCCGAGCTAGTGGCAT
CTCGATCTGTACGTAGTTTAACAGCACTGACACGGGCAGCTCACCCTTAATTAAGTCCCAAGATCTCTCTGCTTGTCACC
ATCCTGATCGCGTTTGCGTATAGTAATCTGCACTTTTGGGGCAGCTCCCCTAAGTGTGTGCCTATCTAATGACTAATGGA
GCGT-GCTTTGCGAAAAGGTTGCGTCTCCGAGCAACACCTCACCGTTTCTTCCTTCAACCGTCCCCTCTGGATCTCTTTC
GACCGGCGCAATTAATTAGTGC----GATGGAGGACTGATTAGGCGACTAAAATTAGTGCGATGCAGGATCAGGATCAGG
ACGCCCGTCTTCATCTTGCTATGCTAAGCTAGCTGTGCTTCTTACTCCATCGCACTACGTAGTGTACTAC------AAGA
GCAATGCTGTTTGGGTTGGGTTCGATTGATTGTTGGGGTTATCATGAACGCCAGTGGCAGCGCCACGGCTAGAGCAC-CT
TGGATATTTTTCGAGCGGCGCAATTAGTGCGCTGGAAGATTAGCTAGGAAACAACCGGACGTCTTAACATGATACGCAAT
GCTATATTAGTTTGCC---------
>chr1D_33
--------------------------------CTAGGAGCGCGTCGAAGACCGCC-GCAACCACGAAGAGAGAGGGAGAG
GAGCATGGATAGGC-GGCAGAGAAAAGGTTGTGGATTTGTAGATTCTCTCGAGTCACCTGAGCGGGGGCAGCTCGCCGAC
GAACCCTCGAAGCAGATGGCCACC--------AGCCGGCAGGAGCAGGACGGCCAATTTCACCCTTGGCGATGT----AA
TTGTCACAAGCTCCAGCCACAAATTCGCCAAAAAAAAAAAGAAATAATTGCCAGTCAAAGATCCCCGTAGAAAATATTCG
CCGCTGAAAAATCGCAAGCACTGTGCAGTTCAAAACCATTGGTCTGAATGCATGCGCGGAGCTCCGTT------------
--AGTCGTCGATCCCATCCCCCGTGGATCGTGACCAGCGATCGGAACCGGAGAATAT-----------------------
---------CGCGCTCCCGAGTC-------CACGGCGGCAGCACAGTGCGGCATGCCTCCGTGCCGGCCCG---------
-------------------------ATCAG-------CTCGCGGCTAGCTTCCG--TTCCACCTGTGCCCCACCGGCAGG
AGCCATTTTTCCAAGCTTAAAAGGGACGGCCGAGGACTTTGAATTTTTA-AAACCACGCTC----CACATCTCGCAGCTC
ACTCGCTCTCCGGTCGATCGCTCTCTCGCCAGGCCGAGCCACACCGCCACTTGCTCCGATATTTCCTCGC----------
------CC--------GCTCCTCCGGTCGATCGCCTGCACCACAAGC----CGGCC----GGCAGCGCGCTCGGTCTCCC
ATGCGCCGCCTTTGACTACCGCAGCTCCACGAGTCCGCACCCCGCACATGGCGTGAGAGCGTGGT----------C-TAG
CTGATAAGTCCAAGAAGTCCAAGCTCGTGCACGTCGAGGCTT--------GCGT----GCGTGCGGAGTTCGCGGAGGGA
GAGGAAGGAAGCGACCG---ATGGCCGCGCAGGAGGGCGCCGCGGGGACGGCGAACCAGGTGGCGAGGGTGCGGTACGGC
GACGTCGACGACAGCAACTTCGCGCTGCGCGGCCGCGCCGTGCCGCTGCTGGCCGGCCTGCTCGCCCTCCTCGTCGCCTT
CGTCGCCGTCTGCCTCTACCTCCGCTGGGCGTGCGGCCGCCGCCGCGCCCGCCGCGACGCCGACCGCGAGGCCTCGTCCT
CGTCCGCCGCGGCCTCGCCCGTGCCCGGCCTCGACGCCGACGCCATCAATGGGCTGCCCGTCACGCTCTACAGCCCGCCC
GCCTCCTCGCCGGCGCGCTCCCCTTCTCGGCAGAAGGGCGACGGTGGAGACGAGGAGCAGGCGGC------GGCGGCTGT
GGAGTGCTCGATCTGCATCAGCGCGCTGGTGCCCGGGGACAAGGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACC
CGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCAGCTGCCCGCTCTGCCGCACCCTCCTCCTCCCCGCCGCCGCCGTC
GCCAAACGTGTCGACGTTGTCAACGGAGGCCAC---CCGCCGGTGTGACTCGTGAGCCAGAAGTCAACGTGCTCGCGCGC
CAA--------CTCATCGAAGCATGACAAGCAGGCCCCACCTGTAAGCCACTTACTGCTATCTTGACGGCAAGAAAGCCT
GTCCCGGTTTAACGACAGAACCAAATGACCAATGTGGCTAGCTAACTGGCCCCGGCG-------AGGTGCGCCATCGCCG
G-------------------------------------------------------------------------------
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>chr1A_76
---------------------------------------------------------------------------GAGAG
GAGCATGGATAAGC-GGCAAAGGAAAGGTTGTAGTCTTGTAGATTCTCGCGAGTCACCTGGGCGGGGGCAGCTCGCCGAC
GAACCCTCGAAGCAGATGGCCACTAGCCGTCTAGCCGGCAGGAGTACGACGGCCAATT-CACCCTTGGCGATGT----AA
CTGTCACAAGTTCCAGCCACAAATCCGCC---AAGAAAAATAAACTATCGCCAGTCAAAGATCCCCGTAG----------
----------------------GTGCAGTGCAAAACCATTGGTCTGAATGCATGCGCGCAGCTCGCTTGC--------TA
CAAGTCGT-----CCATCCCCTGTGGATCGTGACCAGCGATCCGAACCGGAGAATATTACACCTCCCTGCAAATTAAGAA
GAAGAATATCGCATCGCCGAGTC-------CACGGCGACAGCACAGTGCGGCATGCCGCCGTGCGTGCCGGCTCGATCCA
GTCACGCCCAAGTTGGCAGTTGCCCATCAGCTCGGGCCTCGCGGCTAGCTTCCG--TTCCGCCTGTGCCCCACCGGCCGG
AGCCATTTTTCCAAGCTTAAAAGGGACGGCCGAGGACTTTGAATTTTAA-AA-CCACGCTC----CCCGTCCAGCAGCTC
GCTCACTCTCCGGTCGATCGCTCTCTCGCCAGGCCGAGCCACACCGCCACTTGCCACGATATTTCCTCGC----------
--TCGCCC--------GCTCCTTCCACCGATCGCCTGCACCACAAGC----CGGCCGGCCGGCAGCGCGCTCGGTCTCCC
ATGCGCTGCCTTTGACCACCAGAGCTCCACAAGTCCGCACCCCGCACATGGCGTGAGAGGGTGGGCTAGCTGCTAC-TAG
CTGATAAGTCCAAGAAGTCCAAGCTCGTGCACGTCGAGGCTTGCGTGCGTGCGT----GCCTGCAGAGTTCGCGGGGAGA
AGAAGGAGAGA--ACCG---ATGGCCGCGCAGGAGGGCGCCGCGGGGACGACGAACCAGGTGGAGAGGGTGCGGTACGGC
GACGTCGACGACAGCAACTTCGCGCTGCGCGGCCGCGCGGTGCCGCTGCTGGCCGGCCTGCTCGCCCTCCTCGTCGCCTT
CGTCGCCGTCTGCCTCTACCTCCGCTGGGCGTGCGGCCGCCGCCGCGCCCGCCGCGACGCCGACCGCGATGCCTCGTCCT
CGTCCGCCGCGGCGTCGCCCGTGCCCGGCCTCGACGCCGACGCCATCAATGGGCTGCTCGTCACGCTCTACAGCCCGCCC
GCCTCCTCGCCGGCGCGCTCCCCTTCTCGGCACAAGGGCGACGGTGGAGACGAGGAGGAGCAGGC------GGCGGCTGT
GGAGTGCTCGATCTGCATCAGCGCGCTGGTGGCCGGGGACAAGGTGAAGGCGCTCCCTCCCTGCGGCCACTGCTTCCACC
CGGAGTGCGTCGACGCCTGGCTCCGCTCCCAGCCCAGCTGCCCGCTCTGCCGCACGCTCCTCCTCCCCGCCGCCGCCGTC
ACCAAGCCGGTCGACGTTGTCAACGGAGGCGACCCGCCGCCGGTGTGACTCGTGAGCCAGAAGACAACGTGCTCGCACGC
CAA--------CTCACCGAAGCATGACAAGGAGGCCCCACCTGTAAGCCACTTACTGCTATCTTCACCGCAAGAAAGCCC
GTCCTGGTTTAACAACAGAGCCAAATGACCAATGTGGCTAGCTAACTGGCCCCGGCCCCCGGCGAGGTGCGTCATCGCCG
GCCGGAAAGGCAGGGCCAGCTGTGCCATGGCACCACGGGAGCCGTTCTTTCGCAGGCCGGCCGGCCGGCGTGGGGTCGCG
TCGTCTCTCCGGCCACTTTTCTACCTTAAATTTTCCGTTCAAGCCCCCAAAGGGAAGGACAGCGGTGTAGGCTGTACATT
AAACTATCTATCGCCAAGAGTATTGTAGCACCGTCACTGCGTACGCGGTGGCAGCTCAGTGGTGCCCGGGCTAATGGCAT
CTCGATGTGTACGTGGTTTAACAGCACTGATCGCCTTTAAT---------TTAAGTCCCAGGATCTATCTGCTTGTCACC
ATCCTGATCGCGTTTGCGTATAGTAATCTGCGCTTTTGGGGCAGCTCCCGTAAGTGTGCGTGTATCTAATGACTAATGGA
GCCGCGCTTTGCGAAAAGGTTGCGTCCCCGAGCAACACCTCACCGTTTCTTCCTTCAACCGTCCCCTCTGGATCTCTTTC
GAGCGGCGC----AATTAGTGC----GATGGAGGATTGAGTAGGCGACTAAAATTAGTGCGATGCAGGATCAGGATCAGG
ACGCCCGTCTTCGTCTG-----GCTAGGCTAGCTGTGCTTCTTGCTCCATCGCACTACGTGTAGTGTATGCAT-----GA
GCAATGCTGTTTGGGTTGGGTTCGATTGATTGTTGGCGTTATCATGAACACCAGTGGCAGCGCCACGGCTGGAGCACTCT
TGGATCTTTCTGGAGCGGCGCAATTAGTGCGCTGGAAGATTAGCTAGGAAACAACCGGACGTCTTAACATGGTACGCAAT
GCTATATTAGTTTGCCGTGCTTAAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S---------------------------S------
-S----------------S-----S--------S--------------S---------------------S---------
------------------------------------S--------------------------S-S--------------
---------S-------------------------S--------------------------------------------
------------------------------------------------------------------S-----------S-
---------------S-------------------------------S-------------------S------------
---------S----------------------------------------------------------------------
----------------------------------S-------------------S-------------------------
-------------------------------------------S-----S-----------SSSS---------------
----------------------------------------------------------------------SSSSSSSSSS
SS---------------------------------------------SSSS-----------------------------
--------------------------------------------------------------------------S-S---
-----S----------------------------S--S----------------SSSS----------------------
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---------------------SS---------------------------------------------------------
---------------------S----------------------------------------------------------
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-------------S------------------------------S-----------------------------------
------------------------------------------S-------------------------------------
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---SSSSSSSS-------------------------------------------------S-------------------
----------------------------S-----------S-SS--SS-S----------S-----SS------------
---------------------S----------------------------------------------------------
--S-----------------------------------------------------------S-----------------
----------S------------------S--------------------------------------------------
--------------------S--------------------------------------S--------------------
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------------------------------SS------------------------------------------------
----------------------SSSS--------------------------------S-----S------S--------
---S-----------------S----------------------------------------------SSSSSSSS--S-
------------------------------------------------------------------------------SS
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>forward_105
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-----ATGGATAAGCGGCCGAGAAG-------------------------------------------------------
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>reverse_1789
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----------------------------GCAATGTGGCTACCGTACCT--------------------------------
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