>input_sequence_75526
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----------------------------------------------------------------------------ATGG
GCAAGATCAAGATGCCGGCCCTGTTCCGCCGCCGCTCCTCCTCCAAGTCGCGCTCCGCGTCGCCGCCGCCTACTCCCC--
-------AGGAGGA---AGAGGGCACCCGGCCGGCGTCTGGCGCGGGGTCCCCGGCGCGGTCGGCGGAGGAGGAGATGGA
GCGGGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCCGGATCTCGCGGCCGGAGCTGGCGGCCCTGTTCGAGAGCCTGG
GCCACGCGGCCACGGAGGACGAGCTGACCCGCATGATGGCGGAGGCCGACGCGGACGGCGACGGCTTCATCAGCCTGGAG
GAGTTCGCGGCGCTGAACGCCACGGCGGCCGGCGACGACGAGGAGGACCTGCGGCTGGCCTTCAAGGTGTTCGACGCGGA
CGGCAGCGGCGACATCTCGGCCGCGGAGCTGGCTCGCGTGCTCCACGGCCTTGGCGAGAAGGCGACAGTGCAGCAGTGCC
GGCGCATGATCGAGGGCGTGGACAAGAACGGCGACGGGCTCATCTCCTTCGACGAGTTCAAGGTCATGATGGCCTCCGGC
TTGGCCGCCAAGATGGCCTGA-----------------------------------------------------------
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>chr3B_1_TraesCS3B01G538300
AGGCGGATGGGTGAAGTGGAAAGTGGCGGCGGCGGCGTACAGGAGGAGGAAATGTGGATGGATGATAAGATTTCGGTGCC
GCCGTTCGACTTAAATAGCCAAGCTAGACACTACGTGGCCTGCCGGAGTTGTAGCACGCAGCGCCACCGGTCCGAGCGAG
GAGACGAGTTTCGGACCGCCAGGTTTCAGGGTGTTTCCGACTGGGATCCCTTTCGTTAGTCCGACGTGGCGGGCGTGTCC
GGGCACCCTCCATATCCGTCTCATATTTGGGCTGGATATGACGGGTCCCCGTCAGCCCGGGCGTTTGAGGCGTCCGTCTA
AATTAAAAAAAAAATGCGACGGGTCAATGATCAGGCGGCCCGCCTGAACGCTTGAGAAGGATTTGAGATGCCCGATTTTA
GATGCTCTAGCCGAGCCACAAAATGAAGCGTGACAAACAGTCGGCCATGGACCAAGGTGGATACGAGGACCAACATTCGC
CGGAGTCAAG--TTTTTCTCTTTTTGAAACTTTCGCCGGAGTTAAAGTTGTAGAGGGGAGTGACTCGCCGGCGCGGCGAA
AGAGACCTAGTACCTTGGCCCTATG---CATCC---------------------G-------------------------
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-----------------------------------------AAAAGAATTCCGCAACACAACAAGGGGATGAGCCGTGGA
CAGGGTCTCCCACGGCCGTTGGCGTAATCCGGCAATCCGCGATGCAATCGACGCGCGAGGGACCGGGCCTCCCCTCTCAC
TATCCACCAC-GGGCCCACAGTCAGAGACCACACGCAGCCTACAGCGCGGCCCACG--CACGCACAGCTAGCCGGACTCA
-----------CACACCTTCCTCCGCTCCTTCCTCGGCTCCGAAT----CT-CTCCAATGGTGGCTGCCTCCTCC---AT
CCATCTATAAATACCCGACGTCTCGCACCGGAACGAACCTGCAGCCACCGCAGAGCACGCCATTGA-CCGAATCGAGC-G
ACCCAGAGCCAAGCCAATCCGAGCCGAGAGTTTCTTCTCCGTTGCCAGCGCCGCCGAGCAGACGACGGCGACGACGATGG
GCAAGATCAAGATGCCGGCCCTGTTCCGCCGCCGCTCCTCCTCCAAGTCGCGCTCCGCGTCGCCGCCGCCTACTCCCC--
-------AGGAGGA---AGAGGGCACCCGGCCGGCGTCTGGCGCGGGGTCCCCGGCGCGGTCGGCGGAGGAGGAGATGGA
GCGGGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCCGGATCTCGCGGCCGGAGCTGGCGGCCCTGTTCGAGAGCCTGG
GCCACGCGGCCACGGAGGACGAGCTGACCCGCATGATGGCGGAGGCCGACGCGGACGGCGACGGCTTCATCAGCCTGGAG
GAGTTCGCGGCGCTGAACGCCACGGCGGCCGGCGACGACGAGGAGGACCTGCGGCTGGCCTTCAAGGTGTTCGACGCGGA
CGGCAGCGGCGACATCTCGGCCGCGGAGCTGGCTCGCGTGCTCCACGGCCTTGGCGAGAAGGCGACAGTGCAGCAGTGCC
GGCGCATGATCGAGGGCGTGGACAAGAACGGCGACGGGCTCATCTCCTTCGACGAGTTCAAGGTCATGATGGCCTCCGGC
TTGGCCGCCAAGATGGCCTGATCCCTCCATCCTCTTCTCGATTCAGC------------------------GATT-CGTC
CACGTCTTCCTCCCTCCCTCCTTCCTCTCGCGTGCGGTGCGGTGCGGTGCGGTGCGGATTAAGTGCGAATTAAGTGTACA
TAATTCAAGGATTAAAGGGCGGCCATTAGAGCGTGCGTGCGTGCGTTAGTAGATTCTTTGGTTTCTTTCTTTTCTTGGTG
GTGCCGACTGCCGAGTAACCAAGCTGAGAATAGCTACGGTTTGGCCACCAGTTGT------------------------T
ATCCCAAAGCAGAACCCATTGGCCAGGGTGGTACCTCCGCCTCCGGGCTACCTGAAGAAGATTAATGTGGATGGAGGG--
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-----------------------------------------------------------------------GGGATACCG
TTCAACAAATGTCCGTTTAGTTTAGAAAAATAAAATGTACAGTACAATTC-AAAAGTTGGTTGTGAAATTTTGAAAAAAT
AAAATGTTTGTTGATTTTTTTCATACAATGTCAATAAATGTACTTGTAGTTTAGAAAATCATGTCAAATATTCGTTTTAT
AAAATATTCGGTGTATCTTTGAAAAAAGTTAGCATGTATT-----TGAAAAAATGTTTAAAAGCATGTATTTCAAAATTG
TGCAATGAGTATCAAGAAAATGTTATGTATTAATAAAAAAATATAACGTGTATTGAAAAAGTAGACATGCCATATAAAAA
CCCAAAAACCTTATGAAGAAAAAACAAAGAACATAAATAAATAATTAACCATTAATATAAAAAGAAAGCCAATAACAATT
GTTAAAAACATAGTAAACAAAGAAAATAGTGCCTAGAATTCCCCTAAATAAAGGATCACACCCTACGTATCTCTCGAGGA
GCAAATAATTAACCTTCGGGAGCTACACTTGGTGTGGGCTAGGAGTGCGCCACTTGGCACACGCTCAGCCACTGCCATGT
GTCACGCTTTGGGCGCTTTCTTTGAATTTTATTTTATTGCAGGCGTTTTCGGCTGTTAGATGTTTTTTCGCCTTCTCGGA
CTTCCCCCCAATTTTTGGCCAAATTGTTT
>chr3D_456
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-------------------------------------------------------GGTCGAGACGAGGACCAACACTCGC
CGGACTCAGTTTTTTATTTGTCTTTGAAACTTTCGCCGGAGTTAA-GTTGAAGAGGGGAGTGACTCGCCGGCGCGGCGAA
AGAGACCTA---CCTTTGGCCCGTCAGCCGT-------------------------------------------------
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-------------GGCCGTTGGCGTAATACGGTAATCCGCGATGGAATTGACGCGTGCGGGACCGGGCCCCTTCTCTCAC
TATCCACGAC-GGGCCCACCGTCAGAGACCACGCGCACCTGCCAGCGTGGCCCACGCCCACGCACAGCTAGCCAGAGTCG
-----------CACACCTTCCTCCGCTCCTTCCTCGGCTCCGCCTCCGACT-CGCCAATGGTGGCTCATCCTCC-----T
CCATCTATAAATACACCACGTCTCCCTCTGGAACGAACCTGCAACCACCGCAGAGCACGCCATCGAATCGAATCGAGC-G
AACCAAAGCCAAGAAGAGT---------------TTCCTCGTTGCTAGCGCCGCCGAGCAGACGACGACGTCGGCGATGG
GCAAGATCAAGATGCCGGCCCTGTTCCGCCGCCGCTCCTCCTCCAAGTCGCGGTCCGCCTCGCCGCCGCCG------CCG
CAGGACGAGCAGCA---GGAGGGCACCCGGCCTGCGTCGGGCGCGGGGTCCCCGGCGCGGTCGGCGGAGGAGGAGATGGA
GCGGGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCCGGATCTCGCGGCCGGAGCTGGCCGCCCTCTTCGACAGCCTGG
GCCACGCGGCCACGGAGGACGAGCTGACCCGCATGATGGCCGAGGCGGACGCGGACGGCGACGGCTTCATCAGCCTGGAG
GAGTTCGCGGCGCTGAACGCCACCGCGCCCGGCGACGACGAGGAGGACCTGCGGCTGGCCTTCAAGGTGTTCGACGCGGA
CGGCAGCGGCGACATCTCGGCCGCCGAGCTGGCGCGCGTGCTCCACGGCCTCGGCGAGAAGGCCACGGTGCAGCAGTGCC
GGCGCATGATCGAGGGCGTCGACAAGAACGGCGACGGGCTCATCTCCTTCGACGAGTTCAAGGTCATGATGGCCTCCGGC
TTCACCGCCAAGATGGCCTGATCCATCC--CCTCTTCTTGATTCAGC------------------------GATTTCGTC
CGCGCCTTCCTCGCTCCTTCCCTCTCGC------------------GTGCGGTGCGGATTAAGTGCGAATTAAGTGTACA
TAATTCAAGGATTAAAGGGCGGCCATTAGAGCGTGCGTGCG----TTAGTAGATTCTTTG-TTTCTTTGTCTTCTTGGTG
GTGCCGAGTGCCGAGTAA--------------------------------------------------------------
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>chr3A_456
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-------------------------------------------------------GGTCGAGACGAGGACCAACATTCGC
CGGAGTCAGTTCTTTTTTTCATTTTGAAACTTTCGCCGGAGTTAA-GTTGCAGAGGGGAGTGACTCGCCGGCGCGGCGAA
AGAGACCTA---CCTTGGCCCTGTG---CATCTACCGTGCGGCCGTGCGGATCAG-------------------------
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-----------------------------------------AAAAGAATTCCGCAACACAAGAAGGGGATGAGTCGTGGA
CACGGTCAT-CACGGCCGTTGGCGTAATACGGTAAGCCGCGATGGAATTGACGCGTGCGGGACCGGGCCTCCCCTCTCAC
TGTCCGCGACGGGGCCCACCGTCAGAGACCACGCGCACCT----------------------------------------
------------------TCCTCCGCTCCTTCCTC----------------CCTCCAATGGTGGCTCCTCCTCC-----T
CTGTGTATAAATACACCACGTCTCCCTCTGGAACCAACCTGCAACCACCGCAGAGCACGCCATCGA-TCGAATCGAGC-G
AACCGAAGCCAAGAAGAGT---------------TTCCTCGTTGCTAGCGCCGCTAAGTA---GACGTCGACGGCGATGG
GCAAGATGAAGATGCCGGCCCTGTTCCGCCGCCGCTCCTCCTCCAAGTCGCGCTCCGCGTCGCCGCCGACGACTCCTCCC
CGGGAGGAGCAGCA---GGAGGAGAGCCGGCAGGCCATC------GGGTCCCCGGCGCGGTCGGCGGAGGAGGAGATGGA
GCGGGTCTTCCGCAAGTTCGACGCCAACGGCGACGGCCGGATCTCGCGGCCGGAGCTGGCCGCCCTCTTCGAGAGCCTGG
GCCACGCGGCCACCGAGGACGAGCTGACCCGCATGATGTTCGAGGCGGACGCGGACGGCGACGGCTTCATCAGCCTGGAG
GAGTTCGCGGCGCTCAACGCCACGGCGCCCGGCGACGACGAGGAGGACCTGCGGCTCGCCTTCAAGGTGTTCGACGCGGA
CGGCAGCGGCGACATCTCGGCCGCGGAGCTGGCGCACGTGCTCCACGGCCTCGGCGAGAAGGCCACGGTCCAGCAGTGCC
GGCGCATGATCGAGGGCGTCGACAAGAACGGCGACGGCCTCATCTCCTTCGACGAGTTCAAGGTCATGATGGCCGCCGGC
TTCGCTGCCAAGATGGCCTGATCCGTCCTCCCTCTTCTTGGATTCAATCCGTTGTCGTCCGCGGACAGATTGATTTCGTC
CACGCCTTCCTCGCTCCTTCC-TCTCGC------------------GTGCGGTGCAGATTAAGTGGGAATTAAGTGTACA
TAATTCAAGGATTAAAGGGCGGGCATTAGAGCGTACGTGCG----TTAGTAGATTCTTTG-TTTCTTTGTCTTCTTGGTG
GTGCCGA-------------------------------------------------------------------------
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>chr3B_500
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---------------------TTTTGAAACTTTCGCCGGAGTTAA-GTTGAAGAGGGGAGTGACTCGCCGGCGCGGCGAA
AGAGACCCA---CCTTGGCCCGATGCATCATCGATCGTGCGGCCGCGCGGATCAGAAAAGAATTCCACGCGAATCAGCCT
GCGGTTGAGTTTGTTAGGTCGACAGTGGTATCCCCAACCCATCAGGGTTCAAATCCTGGTGCTCGCATTATTCCTGGATT
TATTTCAGAATTTCCGGCGATGCGCTTTCAGTAGGAGGAGACGTTCCCGTCGACGACGAGGCGCCTACGGTGACTTCGTA
AATCTTAAGATGATATGCCGACTCAGTCTTTCGAAGGTGCTCATAGGGATAGAGTGTGCGTGTTTGTTCATAGAGATGAG
TGTATGCGCGTGTATATGAGCGCTTATGTCTGATGCTAAAAAAAAAAAATCCGCGACACAAGAAGGGGATGAGCCGTGGA
CACGGTCTCCCTCGGCCGTTGGCGTAATCCGGCAATCCGCGATGGAATCGACGCGTGCGGGACCCGGCCTCCCCTCTCAC
TGTCAACCAC-GGGCCCACAGTCAGAGACCACACGCGACCTACAGCGTAGCCCACG--CACGCACAGCTAGCCGGACTCA
-----------CACACCTTCCTCCGCTCCTTCCTCGGCTCCGAAT----CT-CTCCAATGGTGGCTGCCTCCTCC---AT
CCATCTATAAATACCCGACGTCTCGCTCCGGAACGAACCTGCAACCACCGCAGAGCACGCCGTCGA-TCGAATCGAGC-G
ACCCAGAGCCAAGCCAATCCGAGCCGAGAGTTTCTTCTCCGTTGCCAGCGCCGCCGAGCAGACGACGGCGACGACGATGG
GCAAGATCAAGATGCCGGCCCTCTTCCGCCGCCGCTCCTCCTCCAAGTCGCGCTCCGCGTCGCCGCCGCCTACTCCCC--
-------AGGAGGA---AGAGGGCACCCGGCCGGCGTCGGGCGCGGGGTCCCCGGCGCGGTCGGCGGAGGAGGAGATGGA
GCGGGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCCGGATCTCGCGGCCGGAGCTGGCGGCCCTGTTCGAGAGCCTGG
GCCACGCGGCCACGGAGGACGAGCTGACCCGCATGATGGCGGAGGCGGACGCGGACGGCGACGGCTTCATCAGCCTGGAG
GAGTTCGCGGCGCTCAACGCCACGGCGGCCGGCGACGACGAGGAGGACCTGCGGCTGGCCTTCAAGGTGTTCGACGCGGA
CGGCAGCGGCGACATCTCGGCCGCGGAGCTGGCGAGCGTGCTCCACGGCCTCGGCGAGAAGGCGACGGTGCAGCAGTGCC
GGCGCATGATCGAGGGCGTGGACAAGAACGGCGACGGCCTCATCTCCTTCGACGAGTTCAAGGTCATGATGGCCTCCGGC
TTGGCCGCCAAGATGGCCTGACCCGTCCATCCTCTTGTTGATTCAGC------------------------GATTTCGTC
CACGCCTCCCTCCCTCCTTCC-TCTCGCGTGCC---GTGCGGTGCGGTGCGGTGCGGATTAAGTGCGAATTAAGTGTACA
TAATTCAAGGATTAAAGGGCGGCCATTAGAG-------------------------------------------------
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>chr3D_585
ATCCA---------------------------------------------------------------------------
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-----------------------------------------AAAAGAATTCCACAACACAAGAAGGGGATTAGTCGTGGA
CACGGTCAT-CACGGCCGTTGGCTTAATCCGGTAATCCGCGATGTAATCGACGCGTGCGGGACCGGGCCTCCCCTCTCAC
TATCCATGAC-GGGCCCACCGTCAGAGACCACGCGCAACCTCCAGCGCGGCCCACGCCCACGCACAGCTAGCCAGAGTCG
GAGTCTAGTCGCACACCTTCCTCCGCTCCTTCCTCGCCTCCGAAT----CTCCTCCAATGGTGGCTGCCTCCTCCTCCAT
CTATCTATAAATGCCCGACGTCCCCCTCTGGAACGAACCTGCAACCACCGCAGAGCAAGCCATCGAATCGAATCGAGCGG
AACCAAAGCCAAGAAGAGT---------------TTCCTCGTTGCTAGCGCCGCTAAGTA---GACGTCGTCGGCGATGG
GCAAGATCAAGATGCCGGCCCTGTTCCGCCGCCGCTCCTCCTCCAAGTCGCGCTCCGCCTCCCCGCCGCCGCCTCCCC--
-------AGGAGGAGCGGGAGGAGAACCGGCCGGCGTCGGGCGCGGGGTCCCCGGCGCGGTCGGCGGAGGAGGAGATGGA
GCGGGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCCGGATCTCGCGGCCGGAGCTGGCCGCCCTCTTCGAGAGCCTGG
GCCACGCGGCCACCGAGGACGAGCTGACCCGCATGATGGCCGAGGCGGACGCGGACGGCGACGGCTTCATCAGCCTGGAG
GAGTTCGCGGCGCTCAACGCCACCGCGCCCGGCGACGACGAGGAGGACCTGCGGCTCGCCTTCAAGGTGTTCGACGCGGA
CGGCAGCGGCGACATCTCCGCCGCGGAGCTGGCGCGCGTGCTCCACGTCCTCGGCGAGAAGGCCACGGTCCAGCAGTGCC
GCCGCATGATCGAGGGCGTGGACAAGAACGGCGACGGCCTCATCTCCTTCGACGAGTTCAAGGTCATGATGGCCTCCGGC
TTCGCCGCCAAGATGGCCTGATCCATCCATCCATCCGACCGGCGGCAACGAAGAAAGCTGTACATACA------------
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------------------------TGAGAAGAGCTACGGTTTGGCCACTCACCAGTCTCCAAGCTGAGCCGAACATCGCT
ATCCCAAAGCGAACCCCATTGGCCATGGTGGTGCCTCCGGAAGAATTGCGAAGGTCGAGCTGAAGGGCACGCACTGCTGC
GACATGCCGGAGTGCACGCGGACGGCATCTCTCAGGGGTCATGGAGTCGTGTTTTTCATCACTACGTGACGGACCCGGCG
ACGCTTCAAGTGAAGGTCGTCGCAAACAAAGGAAGATGTTTAGTGATGTAATACTTGTTCATGAGAGTAGCGGGATACCG
TTCAACAAATATTGGTTTAGTTTAGAAAAATAAAATGTACAGTACCATTCCAAAAGTTGGTTGTGAAATTTTGAAGAAAA
AAAAAGTTCGTTG--TTTTTTTATACAGTGTTAATAAATGTTCTTGTAGTTTAAAAAATCATGTCAAATATTCGTTTAAT
ATAATTTTTGATGTATCTTTGAAAAAAATTAGCATGTACTCTATGTGAAAAAATGTTTAAAAACATGTATTTCAAAATTG
TTGAATGAGTATCAAGAAAATGTTATGTATTAATAAAAAAA-ATAACGTGTATTGAACATGTAGACGTGCAATATAAAAA
CCCAAAAGCCTAATGAAGAAAGAAGAAA----------------------------------------------------
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>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S------------------
--------SS-------S---------------------------S----S-----------------------------
---------SSS--------------------S-----------------------------------------------
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-------------------------------------------------------------S------------------
--S-----------------------------------------S----------S-S----------------------
-------------------------------------S------------------------------------------
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--------------------------S----------------S-------------------S---S------------
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--------------------------------------S-----------------------------------------
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----------------------------------------------S---------------------------------
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---------------------------------S-----------------S--------------S-------------
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------------------------S-------------------------------------------------------
----S------------S---S--SSSSSSSSSSSS--------------------------------------------
-----------------------------------------SSSS---------------S-------S-S---------
-------S----------SSSSSS------S-----------------SSSSSSS-------------------------
----------SS-S-----------S------S------SSSSSSSSSSSSSS-SS--SSSSS-SS-SSSSSSSS-SS--
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----------S-SS-------------------------------S-----------------------------S---S
----S---S----SS------S-----S---S---------S-----------S-----------------------S--
-S---S--S-S----------------S----------S-----------------------S-----------------
-SS--------------------------------------S---------------S-S------S---S---------
-------S---S---------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_204
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------------------------TTCAGGGTGTTTCCGACTGG------------------------------------
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>reverse_2168
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-------CTGCCGAGTAACCAAGCTGA-----------------------------------------------------
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