>input_sequence_75524
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----------------------------------------ATAGGGAGCATCACTGTGTGCTCCCACAAAAATATATCTA
CAAAGCATTAGTTGTCCACCCGATAGCCCAAACACCCCAATCGCAATGGCGAAGCATTCTATCCCCTTGGTCATGGCAAT
GGTTGCCGTCCTTCTCGCAGCCACAGCCACCACCCGGGCCGCGAGCCTTGTCCCAGCAGCCGACGACCGGAACTCAAGAA
GCATGCCAACCGCGTATGAAATGCTAGGGCGGTATGGCTTCCCACCCGGCATCCTCCCAGAGGGCGTGCAGGGCTATGAG
CTCCGGCCAGATGGTTCCTTTGAGGTACACCTCCCTAGACACTGCAAAATCCGCATCGCCGGGCAGAACATCCACTACAG
CAGCCGGATCGCCGGGAAGATCCAGAACGGCTTGATCAAGGGCCTTGAGGGCGTGAAGGTGAAGATCTTTATTCTGTTTA
TCAGCGTTCGAGACGTCCGCCGCAACGGCAACGAGCTCAGGCTCCACGCCGGGATTATAGCCAAGTCATTCTCGGCCAAT
GATTTCTCCTTCTCCCCACGGTGTAACTGAGGCTA--------GCCGTTCCCATGAATAAA-------------------
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>chr3B_1_TraesCS3B01G528900
ATAAGCCGATGGGAGATTTGCGGAAGTCTGGACCTCCGCCACATTGTAAGCAGGTCATCGAGGACATCAATTCAGCAACG
GGAGGAGGGACCTATGCAAGTTTCGTAAAAGAAATCAAGGCGTCATTGGCAGACTTCCAATCCTGTTATTTCATCTTGGA
GGGAAGGGAGTCAAATATCGAGACCCATAGCCTCGCTAAGGCTGGTTGTAATGGTACTCCAGTATCATAGATAGTACTCC
CTCCGTTCCTAAATATTTGTTTTTCTAGACATTTTAAATGACTACCACATACGGATGTATGTAGACATATCTTATAGTGT
AGATTCACTCATTTTACTCCATATGTAATCACTTGTTGAAATGTCTAGAAAGACAAATATTTATAAACGGAGAGAGTAGG
CAATTTTGATGAGTTGTCATAGATTTAAATGAAGAAAGAGAGGGTTTGAGTATCATATCATGATACCGTATCATAATAAA
TGCTATGTTACCCCATAAAAAAATAAATGATATACTATATAATACTCCCTCCGTCCGGAAATACTTGTCGTAAAAATGGA
TGAAAATGGATGCATCTAGAACAAAAATACGTCTAGATACATCCATCCCTCCGACGAGTATTTTCGGACGGAGGGAGTAC
TAATATATAATACTATGCATTAGGGAGGTAGTATCATATACTAATATATTCAAAAAAATAATATTATACACTACTATCAT
ATGCATGATATTATTATATGATACTCTCCATTACAACCAGCTTAAATTGGCTCTAGATATTCTTGTTGGACGCAATCTTT
GGCTCCTTCAGCTTCCAAACATTAATTGTATTCACATGAAGGTTATCATGAATCAATGAAGTGGAGCGTATTTAGATATA
GATACTTCTCCTAATGACTTTTGATTTGGGTACATGATGGTATATATATACGTGGGTATTTGCTATACTGCGGAACGGAT
GGAGTATTAATCCAAGTACTGTCTAGATCTATCTCTATACATAGGGAGCATCACTGTGTGCTCCCACAAAAATATATCTA
CAAAGCATTAGTTGTCCACCCGATAGCCCAAACACCCCAATCGCAATGGCGAAGCATTCTATCCCCTTGGTCATGGCAAT
GGTTGCCGTCCTTCTCGCAGCCACAGCCACCACCCGGGCCGCGAGCCTTGTCCCAGCAGCCGACGACCGGAACTCAAGAA
GCATGCCAACCGCGTATGAAATGCTAGGGCGGTATGGCTTCCCACCCGGCATCCTCCCAGAGGGCGTGCAGGGCTATGAG
CTCCGGCCAGATGGTTCCTTTGAGGTACACCTCCCTAGACACTGCAAAATCCGCATCGCCGGGCAGAACATCCACTACAG
CAGCCGGATCGCCGGGAAGATCCAGAACGGCTTGATCAAGGGCCTTGAGGGCGTGAAGGTGAAGATCTTTATTCTGTTTA
TCAGCGTTCGAGACGTCCGCCGCAACGGCAACGAGCTCAGGCTCCACGCCGGGATTATAGCCAAGTCATTCTCGGCCAAT
GATTTCTCCTTCTCCCCACGGTGTAACTGAGGCTA--------GCCGTTCCCATGAATAAATAGATATCCTCAAAAAAGT
ATTGGCCGTGGGGAGAAGGAGAAATCCTTGGCCTAGAATGACTTGGGCTGATTGACAAATAGATATCCTCAAAAAATATA
GCAATTTTATATTATATGTAGAAATTAATAATTTGTATGTATGCCTAAAAAATATGGCTGATTAAATCTATCTATTTATC
AACCTCTCTATCTATCTATCTATATATCTATCTTTTTTATTGAGGGTATCTATTTATCTTATTAAAGTGGTGGAGATCTA
TTTTATTGAATTGAGAAGTAGCAAAGATGGATATTGGTCACACTAGTAGAAAAAGGACCTTGATAAACACACTAGCATTA
GTCCAGGTTCAAGTTTCATGGGCGTCAGAGGACCTTTAGTCCCGGTTGATAACACCAACCCAGACTAAATGGTCTATCTT
AATTTAGTCCCGGTTGATAACACCAACCTGGACTAAAGGTCCTCCATAGACTAGTTCAAAAGGAAAGCATCCCATGCAGG
AGTCACATGTGCTGTGTAGGTGGGGTGGTAAGCTGCGCGCGAGGCAATATGAGGACCTTTTACTCCCGGTTGTGACAACC
GGGACTAAAGGATCTTTCCTTTAGTCCCGAATTCATAGTCCCGGTTTTGATTGATAAATAGATATCCTCAAAAAATATAG
CAATTTTATATTATATGTAGCAATTAATACTTTGTATGTATGCCTAGAAAGATATGGCTGATTAAATCTATCTATTTATC
AATCTCTTTCTCTCTCTCTCTATCTATCTATCTTTTTTATTGAGGGTATCTATTTATCTTATTAAAGTGGTGAAGATTTA
TTTTATTGAATTGAGAAGTAGCAAAGATGGATATTGGTCAACACGGACATCTCCAACAGTCACCTAGCTGCCGCTGCAAA
AGGTCTCCTCCACGCTGCCGCCTCGGACTCCCTCCTCTCCTCTGTTCAACATCCTCATCGGAGGCAAGAGGAGTGGGGAC
CGTTCATTTCATTTTTTCCTT
>chr3D_997
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------------------------------------ATACATAGGCAGCATCACTGTGTGCTCCCACGAAAATATATCTA
CAAAGCATTAATTGTCCACCCGATAGCCCGAACACCCTACCCGCAATGGCGAAGCATTCTATCCCCTTGCTCATGGCAAT
GGTCTCCATCCTTCTCACAGCCATAGCCACCACCCGGGCCGCGAGCCTTGCCCCAGCAGCCGACGACCGGAACTCAAGAA
ACATGCCAACCGCGTATGAAATGCTAGGGAGGTATGGCTTCCCACCTGGCATCCTCCG-GAAGGCGTGCAGGGCTACGAG
CTCCGGCCAGATGGTTCCTTTGAGGTACACCTCTCTAACGACTGCAAAGTCCGCATCGCCGGGCAGAACATCCAGTACAA
CAGCCGGATCGCCGGGAAGATCCAGAACGGCTTGATCACGGGCCTTGAGGGCGTGAAGGTGAAGATCTTTATTCCGTTTA
TCCGCGTTCGGGACGTCCGCCGCAACGGCAACGAGCTCAGGCTCCACGCCGGGAAGATAGCCAAGTCATTCTCGGCCAAC
GATTTCTCCTTCTCCCCACGGTGCAACTGAGGAGAGGAGACGCGCCGTTCCCATGGATAAATAGATATCCTCAAAAAAAT
ATTGGCCGTGGGGAGAAGGAGAAATCCTAGGCCTGGAATTACTTGGGCTGATTGATAAATAGATATCCTCAAAAAA----
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--------------------------------------------------------------------------ATATAG
CAATTTTATATTATATGTAGCAATTAATACTTTGTATGTATGCCTAAAAAGATATGGCTGATTAAATCTATCTATTTCTC
AA------------TCTCTCTACCTATCTATCTTTTTTATTGAGGGTATCTATTTATCTTATTAAAGTTGTGGAGATCTA
TTTTATTGAATTGAGAAGTAGCAAAGATGGATATTGGTCAACACGGACATCTCCAA------------------------
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>chr3A_1029
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--------------------------------------------------------------------AAAATATATGTA
CGAAGCATTAATTGTCCACCCGATAGCCCAAACACCCCACCCGCAATGGCGAAGCGTTCTATCCCCTTGCTCATGGCAAT
GGTCTCCATCCTTCTCACAGCCATAGCCACCACCCGGGCCGCGAGCCTTGCCCCAGCAGCCGATGACCGGAACTCAAGAA
ACATGCCAACCGCGTATGAAATGCTAGGGCGGTATGGCTTCCCACCTGGCATCCTCCCGGGAGGCGTGCAGGGCTACGAG
CTCCGGCCAGATGGTTCCTTTGAGGTACACCTCTCTAACGACTGCAAAGTCCGCATCGCCGGGCATAACATCCAGTACAG
TAGCCGGATCGCCGGGAAGATCCAGAACGGCTTGATCACGGGCCTTGAGGGCGTGAAGGTGAAGATCTTTATTCCGTTTA
TCCGCGTTCGGGGCATCCGCCGCAACGGCAACGATCTCAGAATCCACGCCGGGAAGATAACCAAGTCATTCTCGGCCAAC
GATTTCTGCTTCTCCCCACGGTGCAACTGAGGCTA--------G------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------------------S------------
----------S----------------------------SS----------------------------S----------
---SS--S--------S------S--------------------------S-----------------------------
S---------------------------------------------S-----------S--S--------------S---
---------------------------------S---SSS--------S-------------------------S-----
--------------------------------------S-----------------------------------S-----
--S-------S-------------------------------------------SS-----------------------S
-----------------------S-------------------------------S----------------------S-
----------------------------S-----S----S---------------S--------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
----------------------------------------------S------------------------------S--
--SSSSSSSSSSSS--------S---------------------------------------------S---S----S--
--------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_540
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----------------------------------------AATACTCCCTCCGTCCGGAA--------------------
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>reverse_2071
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----------------------------------------------------------------------CCCATGCAGG
AGTCACATGT----------------------------------------------------------------------
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