>input_sequence_75519
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---------------------------------------------------------------ATGGCTGATCCTCGGCA
GGAGAGAGTGTGCAGACTATGTAAATACCCGATACAAATATGTGCTCGTGGTCTTCCGTTCTCCGAATTTTCGTTCAGAG
TACCGAGACAATTCAGATGCACGATGGTAAGTTTTATACCGACTCTGATTTTACACCGACTGTGATTTTTTGTAATGTTT
TGTACAAATGGATAGGTGATACCTTGCACTCTAGGAGAAAGGTTGACTCGATTTTGGAGAAGTGAGTTGAAATTGCAGAT
AGAGCCAACATATGAATGGTACGAGTTTGATGTTCTACAGCGTGGATCGAAATACATCCTCGCCGGAGAAAAGGAGATGT
TTGCTAGTATATACAAAATCAACAAGGGCGACACGCTGCATTTGAACGGTTGTTCACTTGTGCACGAACACCTGGTTTTT
GGCCATTTACGCCGACTGTCAGGCGATATCGCAGTGCCAAGATGTACAATAGGTCAGTTCTGTTATTGTAGGTATCCATC
GTATGATGAAATATATCTGACACATTTTATATTCTGTTATGCAGATGAGTACGAGGCGGAACAACGAATTGTGTAG----
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>chr3A_1_TraesCS3A01G510400
GTATATTTTCAAAACATATTGATAATTCCAGTGAAATTATAATAATTCAATTTTTTCGAATTCAAAAAGTTTGAAATTTT
CAGTGACACTTTATTGTTCCAAAACAGTTGCAAATGCGGGTTATAATTCATCACAACCATTTAAAAAATTCCATTAATAA
TTCAATCAATTTCAGAAGCACTCTACATTCATTTTCACACAATTTTCATTTTTTTTAATTTCAATATATTCAGTCATATT
GACACATTAATTTAAATTATTTCATTTCAGTTATTTTAATTTTTCATACATATTACCTCCATTCCATAATACAGAGCCTA
TTCTTTTCAAAATTCAAACATTGCAAAGTTTGACAAAGTTTACAGAGAAATTTTTTTTTGCTAGGGTCACCGATTGCATA
TCATTGGGTACATCATGAGATATACTTTCATATTGCACATCTTTGGTATATATATATATAT--ATTGTCTATTCGTCACC
CAGGGTGAAGAATTCTTATTCTTCACCCCAGCCAACTCACGCATTGGGTCGAACCAGCATCCACGCGGCGTAAGAATAAA
ATACTTGTGAGGTAATTTTACCTTCCCTTAGAATTGGTCTAGTGCTTTATATCCGGCGGCTGTTTGTGGTAAGATTTGAT
TATAAGTGAAGTAATATTACGGCCTACACCAGAAGAGAGAAGTAGCCCCGTAAAATTACGGTGTGTTTTTTTTGTTAGTA
AGGTTGCGTGGTTAGACGAGATAAAAGGGAGCAAAAATCGGGATCAGGAGGCATTCCTGACTTTGTAGTAGGATAAAAGC
TCCGTTCCAAAATTGTTGGTATTATTAATAGATCTATTAATAATCATATGAGACTGAGTACACCGGATTTGTTGCAAGAA
TGAAAGGCCTCCTTCGTTTTGGTTTGTTTTGCATGTCCGAAATCTCGTGATTTGTTTACTTTGTCTCAGAGCGATCTGCA
TATATAT---------------------AATATTGCAATCATAGCATATATGATTCATTCATAATGGCTGATCCTCGGCA
GGAGAGAGTGTGCAGACTATGTAAATACCCGATACAAATATGTGCTCGTGGTCTTCCGTTCTCCGAATTTTCGTTCAGAG
TACCGAGACAATTCAGATGCACGATGGTAAGTTTTATACCGACTCTGATTTTACACCGACTGTGATTTTTTGTAATGTTT
TGTACAAATGGATAGGTGATACCTTGCACTCTAGGAGAAAGGTTGACTCGATTTTGGAGAAGTGAGTTGAAATTGCAGAT
AGAGCCAACATATGAATGGTACGAGTTTGATGTTCTACAGCGTGGATCGAAATACATCCTCGCCGGAGAAAAGGAGATGT
TTGCTAGTATATACAAAATCAACAAGGGCGACACGCTGCATTTGAACGGTTGTTCACTTGTGCACGAACACCTGGTTTTT
GGCCATTTACGCCGACTGTCAGGCGATATCGCAGTGCCAAGATGTACAATAGGTCAGTTCTGTTATTGTAGGTATCCATC
GTATGATGAAATATATCTGACACATTTTATATTCTGTTATGCAGATGAGTACGAGGCGGAACAACGAATTGTGTAGGATG
GAGTTATCTACACATCAAAATCGATGCCCCCTCGTGGATGTTAGTTAATTATCGAGTATGGTTTAGGGTGTACCTGAACA
TGGGGCTAGTTTGTAAT-AAAAAAAGAGTTGTCAGCAGTTGAATTAGGGAGTTTGTTATTTTTTAATGGAACCAAGGCTC
GTGAAAAAAAA-TGTCTGACTGGTTCAAAGGTGAGACATATATGATTAGAGAGTATTATTACGCGACATCAGAGTAATCG
GCCGCACCACAAAAGCATAATAAAATAGGTTTACAACCATGGCAAAATGATGTAGTATTACAATTGACAAAGACATGTAA
AATTGAATAATAGAGTCGGACTGGTTTTATTCCCCATGTTTAAAAGCAATGCAAGACATTAGAATAAATTTCTGAATAAA
ATACAGATCAATTTAAAGATGATTCGATGCCCTATCTCTAGAAGTGAATGGAGCTGGAATTTAATTCTACCAGAGTAGTA
AGTATGGATGAGTTTTGGCTGTATATAAAAAAGTCTGACCCGCAAAAAGAAAGTGCAGGTAAATTTTGACCATCATAATC
AGTAGGCCGAGGATATTAAATCGCTTCTTATTTCCAAAGTAGCTATATCTTTTTTGAAAGAATATGTAAATAAATAAATT
TGCTCTATCTCGTAAAAAAGGAATAAATAGTTCTCTGAACGCGATGTACGTTTAGAAGCCGGCACGGCACGTTGTAAACT
TGCCTTGGCATCGAGGTAA-TTTTTTTTGCTAACCGTACAGGAGCTAGGTAAGCTCACGTTGCCGTGATTTTCTGATCTG
ATCCGAGCGGTTTCAACTGTGGAAAAAAGTCTGCAAACTGCTCGCAGTCTCCACGGCGAACAACACGAAGTGAAAGGCGG
CGTGGTGACA-GGGGGCTTTGCGCGCCGGTAGGTCACCTCCGGTGCTCGTTGTGAGTGTTTATCTCCCCGTTTTTTGCAT
CAGGCTTTACTGGTGGTCATGGGGCAGGCCCGGCGGCTGC
>chr3A_447
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----------------------------------------------TATATATATATATAGGGATTGTCTATTCGTCACG
CAGGGTAAT-AATTCTTATTCTTCACCCCAGCCAACTCACGCATTGGGTCGAACCAGCCTCCACGCGGCGTAAGAATAAA
ATACTTGTGAGGTAATTTTACCTTCCCTTAGAATTGGTCTAGTGCTTTATATCCGGCGGCTGTTTGTGGTAAGATTTGAT
TATAAGTGAAGTAATATTACGACCTACACCAGAAGAGAGAAGTAGCCCCGTAAAATTACTGTGTGTTTTTTTTGTTAGTA
AGGTTGCGTGGTTAGACGAGGTAAAAGGGAGCAAAAATCAGGATCAGGAGGCATTCCTGACTTTGTAGTAGGATAAAAGC
TCCGTTCCAAAATTGTTGGTATTATTAATAGATCTATTAATAATCATATGAGACTGAGTACACCGGATTTGTTGCAAGAA
TGGAAGGCCTCCTTCGTTTTGGTTTGTTTTGCATGTCCGAAATCTCGTGATTTGTTTACTTTGTC---------------
------T---------------------AATATTGCAATCATAGCATATATGATTCATTCATAATGGCTGATCCTCAGCA
GGAGAGAGTGTGCAGACTATGTAAATACCCGATACAAATATGTGCTCGTGGTCTTCCGTTCTCCGAATTTTCGATCAGAG
TACCGAGACAATTCAGATGCACGATGGTAAGTTTTACACCGACTCTGATTTTACACCGACTGTGATTTTTTGTAATGTTT
TGTACAAATGGATAGGTGATACCTTGCACTCTAGGAGAAAGGTTGACTCGATTTTGGAGAAGTGAGTTGAAATTGCAGAT
AGAGCCAACATATGAATGGTACGAGTTTGATGTTCTACAGCGTGGATCGAAATACATCCTCGCCGGAGAATGGGAGATGT
TTGCTAGTATATACAAAATCAACAAGGGCGACACGCTGCATTTGAACGGTTGTTCACTTGTGCACGAACACCTGGTTTTT
GGCCATTTACGTCGACTGTCAGGCGATATCGCAGTGCCAAGATGTACAATAGGTCAGTTCTGTTATTGTAGGTATCCATC
ATATGATGAAATATATCTGACACATTTTATATTCTGTTATGCAGATGAGTACAAGGCGGAACAACGAATTGTGTAGGATG
GAGTTATCTACACATCAAAATCGATGCCCCCTCGTGGATGTTAGTTAATTATCGAGTATGGTTTAGGGTGTACCTGAACA
TGGGGCTAGTTTGTAATAAAAAAAAGAGTTGTCAGCAGTTGAATTAGGGAGTTTGTTATTTTTTAATGGAACCAAGGCTC
GTGAAAAAAAAATGTCTGACTGGTTCAAAGGTGAGACATATATGATTAGAGAGTATTATTACGCGACATCAGAGTAATCG
GCCGCACCACAAAAGTATAATAAAATAGGTTTACAACCATGGCAAAATGATGTAGTATTACAATTGACAAAGACATGTAA
AATTGAATAATAGAGTCGGACTGGTTTTATTCCCCATGTTTAAAAGCAATGCAAGACATTTGAATAAATTTCTGAATAAA
ATACAGATCAATTCAAAGATGATTCGATGCCCTATCTCTAGAAGTGAATGGAGCTGGAATTTAATTCTACCAGAGTAGTA
AGTATGGATGAGTTTTAGCTGTATATAAAAAAGTCTGACCCGCAAAGA-AAAGTGCAGGTAAATTTTGACCATCATAATC
AGTAGGCCGAGGATATTAAATCGCTTCTTATTTCCAAAGTAGCTATATCTTTTTTGAAAGAATATGTAAATAAATAAATT
TGCTCTATCTCGTAAAAAAGGAATAAATAGTTCTCTGAACGC--------TTTAGAAGCCGGCACGGCACGTTGTAAACT
TGCCTTGGCATCGAGGCAA-TTTTTTTTGCTAACCGTTCAGGAGCTAGGTAAGCTCACGTTGCCGTGATTTTCTGATCTG
ATCCGAGCGGTTTCAACTATGGAAAAAAGTCTGCAAACTGCTCGCAGTCTCCACGGCGAACAGCACGAAGTGAAAGGTGG
CGTGGTGACA-GGGGGCTTTGCGCGCCGGTAGGTCACCTCCGGTGCTCGTTGTGAGTGTTTATCTCCCCATTTTTTGCAT
CAGGCTTTACTGGTGGTCACGGGGCAGGCCCGGCGGCTGC
>chr3A_468
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---------------------------------------------------------------------TATTCGTCACC
CAGGGTGAAGAATTCTTATTCTTCACCCCAGCCAACTCACGCATTGGGTCGAACCAGCCTCCACGCGGCGTCAGAATAAA
ATACTTGTGAGGTAATTTTACCTTCCCTTAGAATTGGTCTAGTGCTTTATATCCGGCGGCTGTTTGTGGTAAGATTTGAT
TATAAGTGAAGTAATATTACGGCCTACACCAAAAGAGAGAAGTAGCCCCGTAAAATTACTGTGTGTTTTTTTTGTTAGTA
AGGTTGCGTGGTTAGACGAGGTAAAAGGGAGCAAAAATCGGGATCAGGAGGCATTCCTGACTTTGTAGTAGGATAAAAGC
TTTGTTCCAAAATTGTTGGTATTATTAATAGATCTATTAATAATCATATGAGACTGAGTACACCGGATTTGTTGCAAGAA
TGGAAGGCCTCCTTCATTTTGGTTTGTTTTGCATGTCCGAAATCTCGTGATTTGTTTACTTTGTC---------------
------TCAGAGCGATCTGCATATATATAATATTGCAATCATAGCATATATGATTCATTCATAATGGCTGTTCCTCGGCA
GGAGAGAGTGTGCAGACTATGTAAATACCCGATACAAATATGTGCTCGTGGTCTTCCGTTCTCCAAATTTTCGATCAGAG
TACCGAGACAATTCAGATGCACGATGGTAAGTTTTACACCGACTCTGATTTTACACCGACTGTGATTTTTTGTAATGTTT
TGTACAAATGGATAGGTGATACCTTGCACTCTAGGAGAAAGGTTGACTCGATTTTGGAGAAGTGAGTTGAAATTGCAGAT
AGAGCCAACATATGAATGGTACGAGTTTGATGTTCTACAGCGTGGATCGAAATACATCCTCACCGGAGAATGGGAGATGT
TTGCTAGTATATACAAAATCAACAAGGGCGACACGCTGCATTTGAACGGTTGTTCACTTGTGCACGAACACCTGGTTTTT
GGCCATTTACGTCGACTGTCAGGCGATATCGCAGTGCCAAGATGTACAATAGGTCAGTTCTATTATTGTAGGTATCCATC
GTATGATGAAATATATTTGACACATTTTATATTCTGTTATGCAGATGAGTACGAGGCGGAACAACGAATTGTGTAGGATG
GAGTTATCTACACATCAAAATCGATGCCCCCTCGTGGATGTTAGTTAATTATCGAGTATGGTTTAGGGTGTACCTGAACA
TGGGGCTAGTTTGTAAT-AAAAAAAGAGTTGTTAGCAGTTGAATTAGGGAGTTTGTTATTTTTTAATGGAACCAAGGCTC
GTGAAAA-AAAATGTCTGACTGGTTCAAAGGTGAGACATATATGATTAGAGAGTATTATTACGCGACTTCAGAGTAATCG
GCCGCACCACAAAAGTATAATAAAATAGGTTTACAACCATGGCAAAATAATGTAGTATTACAATTGACAAAGATATGTAA
AATTGAATAATAGAGTCGGACTGGTTTTATTCCCCATGTTTAAAAGCAATGCAAGACATTTGAATAAATTTCTGAATAAA
ATACAGATCAATTCAAAGATGACTCGATGCCCTATCTCTAGAAGTGAATGGAGCTGGAATTTAATTCTACCAGAGTAGTA
AGTATGGATGAGTTTTGGCTGTATATAAAAAAGTCTGACCTGCAAAAA-AAAGTGCAGGTAAATTTTGACCATCATAATC
AGTAGGCCGAGGATATTAAATCGCTTCTTATTTCCAAAGTAGCTATATCTTTTTTGAAAGAATATGTAAATAAATAAATT
TGCTCTATCTCGTAAAAAAGGAATAAATAGTTCTCTGAACGCGATGTACGTTTAGAAGCCGGCACGGCACGTTGTAAACT
TGCCTTGGCATCGAGGTAATTTTTTTTTGCTAACCGTTCAAGAGCTAGGTAAGCTCATGTTGCCGTGATTTTCTGATCTG
ATCCGAGCGGTTTCAACTGTGGAAAAAAGTCTACAAACTGCTCGCAGTCTCCACGGCGAACAACATGAAGTGAAAGGCGG
CATGGTGACAGGGGGGCTTTGCGCGCCGGTAGATCACCTCCGGTGCTCGTTGTGAGTGTTTATCTCCCTGTTTTTTGCAT
CAGGCTTTACTGGTGGTCACGGGGCAGGCCCGGCGGCTGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-------------------
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-----------------------------------------------------------S--------------------
--------------------S-----------------------------------------------------------
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--S--------------------------------------------------------------SSSSSSSSSSSSSSS
SSSSSS--------------------------------------------------------------------------
-------------------------------------------------------------------------S------
------------------------------------S-------------------------------------------
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----------------------------------------------------------------------SS--------
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-----------S--------------------------------------------------------------------
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---------------S----------------------------------------------------------------
------------------------------------------------------------S-------------------
-------------S------------------------------------------------------------------
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-------------------S--------------------
>forward_741
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-GGTTGCGTGGTTAGACGAGA-----------------------------------------------------------
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>reverse_2129
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------------------------------------------------GAAAGTGCAGGTAAATTTTGACCA--------
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