>input_sequence_75518
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-----------------------------------------------ATGG-----------------------------
-------------------------------AGGAGGAGACAAATCTGGGCGGCGCCGGCGGAGTGGAGGTGAAGGAGGA
GG---------AGGGGGTC------GAGTCGTTCGAGCCGACAGAGGACGAGCTGGTGCTGCACTTCCTG----------
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---------------------------------CGGCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCGGTGGT
GGAGGCGGACCCGTGCGCGGCGCCGCCGTGGGACCTTCTGGAGCGGCACGGGCTGCTGCGGCGCGGTCACGGCTACTTCT
TCCATGCGCGGCGG---CG---CGGGAAGGGGGGCCCGGTGCAGGTGCGGCGCACCCCGTTGGGCGGCGGCGGCACGTGG
ATGCACAGCGGCAACAGGGAGGACCGGCGGTCCGTGACGGAGCTGGGCGTGGTGGCGCGGTGGTCCATGACGCGCTACTG
CTTCTACGCCCGGGACAGTGC---------------------GCAGGGGCGGCGGAGCACCGGGTGGGTCATGTCCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGAGGAGTACTGGGTGCTCTGCCACGTCCGC
CGCAGCACCAGGAAGAACGTCAAGCCGCGCTCGCGGAGGCGGTAG-----------------------------------
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>chr3A_1_TraesCS3A01G486500
TTGACTTGAGATTAAGCATATTGACCCGAGATTAAGCCATATTGACCCGGAAAGTTCAATAGGATTGATACTAATGACGC
ACCGTGGGCTATACTAATGGCGCGCCAGTGGTGCGCTACTGGTGCGCCATTAGTAAAAAATACTAATGGTGTGCTACTAG
TGGCGCACCTGTAATGAGAGGTCGCATCCTTTCTGGCCGATGTCAATGCAGAGCGGCTGCTCACAGAGGCATGAATGCGG
ATAGCTGACGCCCGGCGGGAACGCACGCGGGCGAGGGAGAAGGGTTTTGGGTGGGCCAGAGTAGTGAGAAGCAAAGGTAG
CAGCGGTTCGAATGCCCATAAAGCCTCCTAGTTTGTCTTCAATTTACGTAAAAAAATGTGTCTGGATTGTCGAGCGGACT
AATAAGTCCATGTCGAATAACAAAACATGTCTAGACCGTACAATCTAAACATATGCGAATGACTTAAGGGTCCATTGGAC
ATGCCTTATAACCTGATCTGCGTTCTAGAAGAAGTTCACCGTGTCGGAAGGCCTTGACATTTCATTCCCCCAGTGTGCTG
GATATACTAACGGACATGCGC-CCATATCGCACTACTTAATTAGTGATCGTGTT---ATCACAATTATAGAATCGATGCG
TATCTCTCCATCCTTACTTACTAGTGATCTCCATTTACACGGCATAAATTGACCCCAGAA--AAAAGAGGAGATTTGCGC
CAAATTTAGAGCCATGCCATTTGTTTTTTGAG---AAGAATTTAGAGCCTTGCCTGCTTTTTTCTTTCTTGATG------
-------TTTCTTTGTTGTTGAGCCTTTT--GTGCCTTCACAGCTGCCCCGATCGGGCCCGATCGAGCAGGCCATCTCGG
CGGGCTAC-GCGTGTTGGGCCG----------------------------AGTAGGGAAATGCAACAAGTACGAGCGG-T
GCGGTGGTTGGAAAGAAACGCAGCCGCATCTTCTTGTCGGGTGGCTCA-----GCCTCCTTGACTTCATC-------GGA
GGG-------AGGG--------------GAGACCTCACCGGAAGGAAATGG-----------------------------
-------------------------------AGGAGGAGACAAATCTGGGCGGCGCCGGCGGAGTGGAGGTGAAGGAGGA
GG---------AGGGGGTC------GAGTCGTTCGAGCCGACAGAGGACGAGCTGGTGCTGCACTTCCTG----------
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---------------------------------CGGCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCGGTGGT
GGAGGCGGACCCGTGCGCGGCGCCGCCGTGGGACCTTCTGGAGCGGCACGGGCTGCTGCGGCGCGGTCACGGCTACTTCT
TCCATGCGCGGCGG---CG---CGGGAAGGGGGGCCCGGTGCAGGTGCGGCGCACCCCGTTGGGCGGCGGCGGCACGTGG
ATGCACAGCGGCAACAGGGAGGACCGGCGGTCCGTGACGGAGCTGGGCGTGGTGGCGCGGTGGTCCATGACGCGCTACTG
CTTCTACGCCCGGGACAGTGC---------------------GCAGGGGCGGCGGAGCACCGGGTGGGTCATGTCCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGAGGAGTACTGGGTGCTCTGCCACGTCCGC
CGCAGCACCAGGAAGAACGTCAAGCCGCGCTCGCGGAGGCGGTAG---------------------GCTGCCGCGCCTCG
GCTCGGTCGCCG----GCAGGCGCAAGGCGGAGACCGGAGAGGATCCCCGAAGAATCTCGTTGTGCGTTTCTTGTGTTCG
TCGCCCG-----------GGCTGTGTGATCTGTCG-GTCG-GTCGGTCCGCGCGCGTGCGCCACGTGCAGTGTGTAGAGA
AGGAAATAAAATGTGCGCGCTGTTGCGATCTTGGGCCTCTCCCTTCCCTTGGTTTCTCCTGCTCCGCGCATGTGTTGCGC
TGCGCG--AGCTGATGTGCGTTTGTGCCCAAGTGTTTTTGGAAATAGTTCGAAACAGACCTTGAATTTATAGACGGAAAG
CTAAATCAAATCATGAACTTGTAATATCGAAAATGGCGCACCAAACTTTTTGTTCCCGGTCTATTTTGAACCTTCAGGGC
GTTTAGCTGGTATTTGCTGACGTGGCAAGTCAAATACTAGGGTTATTTCTGCAAAAAAAATACTAGGATTATTGACCGGC
TGCTCTGATTTTATTTTGTTTGTTTTCCTTTCCTTTTTTTTGTTTCTTTGTTTTTCATTTTCATAATGATAATAAATAAT
TCAATATTTTGTAATGACTTTTTTTGAACTACCAAAGCCACTTGTCTTCTATAAAGAGCGACGAAAATTTACCGAACGAC
AAAAAAAATACTCTAACTAGAGTGATTTACAGGAGTCAATCTCGGATCTTGCACTGAGAGCGCCCGCAACTAGCCACTCG
GCTGCTCATGGCGATAGATAGTGCGTCCTCAATAAGAATAGACAGGAGTGTCCATATATGCAAGCACTTTTTTTAAATCT
AAACATTTCTTGAAAAAAGTTGTGAACAATTTTGACATGCCAATTTTTCAATAAGGGTTAATTGGTTAAATGCCACTCCA
ATTCTGGCGATTCCAAGAAATGCCAGTGCAATTTTCCAAACTTTGAAAAATGCAACTCTAAATTTTGCAAATTATAAAAA
ATGCCACTTTTCAAAAGTTTAGAAATTGAAGTCACCCTTTTTTAA
>chr3B_549
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--------------------------------------------------------------------CCCAATGTGCCG
GGTATATTAACTGACATGCGCGCCATATCGCACTACTTAATTAGTGATTATGTTGTGATCACAATTATAGAATGGATGCG
TATCTCTCCATCCTTACTTGCTAGTGATCTCCATTTACACGGCGTAAATTGATCCCATAGAG-AAATAGGAGATTTGCGG
CAAATTTAGAGCCTTGGCATTTGTTTTTTGAG---AAGAATCCAGAGCCTTGCCTGCTTTTTTTTTTTGAGACAATTTTT
GAGTTACTTTTTTTT---TTGAGAGAGTCTAGAGCCTTGCCTGCTGTCCCGATTGGGCCCGATCGAGCAGGCCATCTCGG
TGGGCTAC-CCGTGTTGGGCCG----------------------------AG-----------------------CGG-T
GCGGTGGTTGGAAAGAAACGCAGCCGCATCTTCTTGTCGGGTGCCTGA-----G---CCTTGACTTCATC-------GGA
GGAAGGAGGAAGGAGGAAGGGGAGACTTGAGACTTCATCGG--GGAAATGGAG---------------------------
------------------------------GAGCAGGGGATAAATCTGGCCGGCGCCGGCGGAGGGGAGGTGAAGCAGGA
GGTGGGGGAGGAGGAGGAGGAGATCGA---GTTCGAGCCGACGGAGGACGAGCTGGTGCTGCACTTCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------------------
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-----------------CGGCGCCCCCCTGGGAGCTGCTGGCGCGGCACGGCCTGCTGCGGCGCGGCCACGGCTACTTCT
TCGCGGCGCGGCGG---CG---CGGGAAGCGCGCC------CAGGCGCGGCGCACCCCGGAGGGCGGCGGGGGCACGTGG
ATGCACAGCGGCAACAGGGAGGACCGGTGCTCCATGACGGAGCTAGGCGTGGTGGCGCGCTGGTCCATGACGCGCTACTG
CTTGTACCGCCGCGACGGGGC---------------------GCAGGGGCGGCGGAGCACCGGGTGGGTGATGAGCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGACGAGGACCAGTACTGGGTGCTCTGCCACGTCCGC
CGCAGCATCAGGAAGAACCTCAAGCCGCGCTCCCGGAGGCGGTAG---------------------GCTGCCGCGCCTCG
CCTCGGTCGCCG----GCCGGCGCAAGGCGGAGAGGATCCCCGG---CCGAAGAATCTCGTTGTGCGTTTCTTGTGTTCG
TCGCCCGGCCGGGCCCCCGGCTGCGTGATCTGTCATGTCC-GTCGGTCGGCCCGCGTGCGCCACATGCAGTGTATAGAGA
AGGAAACAAA-TGTGCGTGTCGCTCGCCTTCCCGTG--------------------TCCTGCTCTGCGCATGAGTTGCGT
TGCGCGCGAGCTGATGTGCATCTGTGCCCAAGTGTTTTTGCAAAAAGTTCAAAATAGACACGCATTTGTAGAC--GAAAG
CTAAATCGAA----------------------------------------------------------------------
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>chr3D_575
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--------------CATGGGCGCCATATCGCACTACTTAATTAGTGATCATGTT---ATCACAATTATAGAATCGATGCG
TATCTCTCCATCCTTAC----TAGTGATCTCCATTTACACGGCATAAATTGACCCCAGAAAGAAAAGAGGAGATTTGCGC
CAAATTTAGAGCCTTGCCATTTGTTTTTTGAGAATAAGAATTTAGAGCCTTGCCTGCTTTTTTTTATCTTGATG------
-------TTTTTTTT---TTGAGCCTTTT--GTGCCTTCACAGCTGCCCCGATCGGGCCCGATCGAGCAGGCCATCTCGG
CGGGCTAC-GCGTGTTGGGCCG----------------------------AGTAGGGAAATGTAACAAGTACCAGTGGTT
GTGGTGGTTGGAAAGAAACGCAGCCGCATCTTCTTGTCGGGTGGCTGA-----G---CCTTGACTTCATC-------GGA
GGAAGGAGGAAGGG--------------GAGACTTCATCGG--GGAAATGG-----------------------------
-------------------------------GGGAGGAGATAAATCTGGCCGGCGCCGGCGGAGGGGAGGTGAAGCAGGA
GGTGGGGGAGGAGGAGGAG---ATCGA---GTTCGAGCCGACGGAGGACGAGCTGGTGCTGCACTTCCTC----------
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---------------------------------CGGCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCGGTGGT
GGAGGCGGACCCGTGCGCCGCGCCGCCGTGGGAGCTGCTGGAGCGGCACGGGCTGCTGCGGCGCGGGCACGGCTACTTCT
TCGCGGCGCGGCGG---CG---CGGGAAGGGCGCC------CAGGCGCGGCGCACCCCGGAGGGCGGCGGCGGCACGTGG
ATGCACAGCGGCAACAGGGAGGACCGGCGGTCCGTGACGGAGCTGGGCGTGGTGGCGCGCTGGTCCATGACGCGGTACTG
CTTCTACGCACGCGACGGGGC---------------------GCAGGGGCGGCGGAGCACCGGGTGGGTGATGTCCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACCACTACTGGGTGCTCTGCCACGTCCGC
CGGAGCACCAGGAAGAACGTCAAGCCGCGCTCCCGGAGGCGGTAG---------------------GCTGCCGCGCCTCG
GCTCGGTCGCCGACCAGCCGGCGCAAGGCGGAGAGGGTCA-------CCGAGGAATCTCGTTCTGCGTTTCTTGTGTTCG
TCGCCCC------------GCTGTGTGATCTGTCGTGTCGTGTCGGTCGGTCCGCGTGCGCCGCGTGCAGTG--TAGAGA
AGGAAATAAA-TGTGCGCGCTGTTGCGATCTTGGGCCTCTCCCTTCCCTTGGTTTCTCC---------------------
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>chr3D_648
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-----------CCTTACTTACTAGTGATCTCCATTTACACGGTGTAAATTGATCCCAGCA--AAAAAAGGAGATTTGCGC
CAAATTTAGAGGCTTTCAATTTATTTAGGAGTATTTAT--TTTGGAGCCTTGCCAGATCCGGCGTT--------------
-------------------------AGTGGCGTGCCTTCACAGCTGCCTCGATTGGGCCCGATCGAGTAGGCCATCTCGG
TGGGCCACTCCGTGTTGGGTCAAGTAGGGAAATGTAACAAGGTTTGGACCAG-----------------------CGG-T
GCGGTGGTTGGAAAGGAACGCAGCCGCATCTTCTTGTCTGGTGGCTGA-----G---CCTTGACTTCATC-------GGA
GGG-------AGGG--------------GAGACCTCACCGGAAGGAAATGG-----------------------------
-------------------------------AGGAGGAGACAACTCTGCGCGGCGCCGGCGGAGGGGAGGTGAAGGAGGA
GGTAAGGGAGGAGGGGGCC------GAGTTGTTCGAGCCGACGGAGGACGAGCTGGTGCTGCACTTCCTG----------
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---------------------------------CGGCCGCAGCTGCGCGGGTTCGCGCCGCGGGTGGCGGGCGTGGTGGT
GGAGGCGGACCCGTGCGCGGCGCCCCCCTGGGAGCTGCTGGCGCGGCACGGCCTGCTGACTCGCGGGCACGGCTACTTCT
TCGCGGCGAGGCGG---CG---CGGGAAGG---------------TGCGCCGCACCCCGGAGGGCGGCGGCGGCGCGTGG
ATGCACAGCGGCAACAAGGAGGACCGCCGGTCCGTGACGGAGCTGGGCGTGGTGGCGCGCTGGTCCATGACGCGGTACTG
CTTCTACCTCCGCGGCGGCGA------------CGGGGCGCAGCAGGGGCGGCGGAGCACCGGGTGGGTCATGTCCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGCCGCGCCGACGACGGCCAGGAGGACCAGTACTGGGTGCTCTGCCACGTCCGC
CGCAGCATCAGGGAGAACGTCAAGCCGCGCTCCCGGAGGCGGTAG---------------------G-------------
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>chr3B_866
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----------CGTGTTGGGTCGAGTAGGGAAACGTAGTAATAAACGGTGCT-------------------------GG-T
GCGGTGGTTGGAAAGAAACGCAGCCGCATCTTCTTGTCTGGTGGTTGCTGAGCCTT------ACTTCATCGGAGGAAGGA
GGAAGGAGGAAGGG--------------GAGACTTCATCGG--GGAAATGGAG---------------------------
------------------------------GAGGAGGAGATAAATCTGGCCGGCGCCGGCGGAGGGGAGGTGAAGCAGGA
GGTGGGGGAGGAGG---AGGAGATCGA---GTTCGAGCCGACGGAGGACGAGCTGGTGCTGCACTTCCTG----------
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---------------------------------CGGCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCGGTGGT
GGAGGCGGACCCGTGCGCGTCGCCCCCCTGGGAGCTGCTGGCGCGGCACGGCCTGCTGCGGCGCGGGCACGGCTACTTCT
TCGCGGCGCGGCGG---CG---CGGGAAGG---------------TGCGGCGCACCCCGGAGGGCGGCGGCGGCGCGTGG
ATGCACAGCGGCAACAAGGAGGACCGCCGGTCCGTGACGGAGCTGGGCGTGGTGGCGCGCTGGACCATGACGCGGTACTG
CTTCTACCTCCGCGGCGGCGA------------CGGGGCGCAGCAGGGGCGGCGGAGCACCGGGTGGGTGATGTCCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACCAGTACTGGGTGCTCTGCCACGTCCGC
CGCAGCATCAGGGAGAACGTCAAGCCGCGCTCCCGCAGGCGGTAGCGGGTCAGTATTACTCAGCAGGCTGCCGCGCCTCG
GCTCGGTCGCCG----GCCGGCGCAAG-----------------------------------------------------
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>chr3A_904
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----------------------------------------------------------------------------GG-T
GCGGTGGTTGGAAAGAAACGCAGCC----------------------------------TTGAATTCATC-------GGA
GGG-------AGGG--------------GAGACCTCACCGGAAGGAAATGG-----------------------------
-------------------------------AGGAGGAGACAAATCTGGGCGGCGTCGGCGGAGGGGAGATGAAGGAGGA
GGTGGGGGAGGAGGGGAT------GGAGTCGTTCGAGCCGACGGAGGACGAGCTGGTGCTGCACTTCCTGCGGCCGCGGC
TGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCGGTGGTGGAGGCGGACCCGTGCGCGGCGCCGCCGTGGGAGCTGCTGGAG
CGGCACGGTCTGCTGGGGCGCGGCCAAGGCTACTTCTTCGCGGCGCGGCGGCGCGGGAAGGTGCGGCGCACCCCGGAGGG
CGGCGGCGGCGCGTGGATGCACAGCGGCAACAAGGAGGACCGCCGGTCCGTGACGGAGCTGGGCGTGGTCGCGCGCTGGT
GCATGACGCGGTACTGCTTCTACCTCCGCGGCGGCGACGGGGCGCAGCAGGGGCGGCGGAGCACCGGGTGGGTCATGTCC
GAGTACGAGATCACGGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACCAGTACTGGGTGCTCTGCCACGT
CCGCCGCAGCATCAGGGAGAACGTCAAGCCGCGCTCCCGGAGGCGGTAGGGGGTCAGTACTCAGCAGGCTGCCGCGCCGG
CCGGCGCAAGTCCGTGTCCGTTCGTCCTCGTCGTTCGTCGCTAACTCGCCATGTGTGATCTGATCTGCCATGTCCGTCCG
TCGGTGCGCGGCACACTGTCTGTAATAAAGCAGAATTTGGTCCCTTCGATTTTGCTGCTCTGCCGTTTGTAAGTCTAAAA
ATAAGTCAAATTTGTTTCCTCAAAAATGTCAACTCAAGTTATTTCTCCGTCAACAACAACATAAGGTTGACTTGTTGATA
TAAACATAAGGTTGGCTTCTTGATATATATGTATGCAAATTGTTATGTTCCAGACTTTACAGAGTGGAAGCCCAGATGAA
AATACAGATACAACAAGACTTTCTGGGAGGCATGATTACCATGCCTCCGACCGGTCAACCTCAGAGGCATTCAGCAAAGA
CCATCACAAGGAAAGACGATCCTGTGAATGCCATCAACAAGAGTAACAGGATAAAGCAGAGGAATTGATCCCGGGCACCA
GTGATCCCGGATGAACAGTAAAATCCGAAAAAATAGTAAAAAAATTCAAAAAAATCTGAATTTTTTTGTCAAGAAACTTT
GATGTTTTTTCTGCATGCGTGCCAATTTTCGTGATGAAATGACATTTGTGGAGGTGTCAGCAAAAAAAACAAAATCATGC
TCCAAAAAAACTGTTTTTGGAAGCATTTTGGAGCATCGATTTTGTTTTTTTTGCTGAGACCTGCATGAATGTCATTTTGT
CATGAAAATTTGTACGCATGTGAAAAATATGTCAATGTTTGTTGCCAAAAAAATTCAGATTTTTTTGAACTTTTTAAATA
TTTTTTTTGTTTGTACTGTAGCAAAGGGTGCCTGTGAGCTCGAGCTCACAATAGCACTTTCGGATAAAGCATATATATAT
CAGAGGCAACCATTGCTTCTACAATAAAGAATAAGCTCCTACAATAAAGGGGCTCCAAAATCTGACGGCAATGTCCCGGA
GAAAGAGTTTCCTGATAAGTCCATGTATTCGGCATTTCTTGGAAATTTTGGCACCATACCTATCAATCTATTATTGGACA
GTACCATTTTTTGTGTAGTCATAAATTCCAAGGTTGCTGGAAGTGTGCCGGTTATCTCGTTATCTGACAAATCTATGAAG
TTTGTCCTTGAAAATGCAACCCAAAACCAAGCTGGGATTGCAGTTATGCTTGCATTTGATATATGTAGCAGCCGAAGGCT
TGTCTGTGATCTAAGCCATGGCGGGAATGCCGGTCCTAGCTGCAAAGATGTTAAGAAAATTGCTTGTAGCCTGAATGGAG
GAATCCAATTCTGACTGACCTTTATCTGAAGGTTTGTGTTGTGCAACCCCAAGAACTTCAAATGTTTGAGGCCTTTTAGA
TGATATTCAGTAACTATACCATTTAGTCTGTTTCCACCTAGCGATATAGGGGTTTGGCCTGGTGGTCGGGGTGGCGAAGC
GGCGGCGAAGGCAAGAGAGAAAGAAGAAAGGATAAAAAATGAGGGAGGATGGAGTCACGAGGTCCGGAAAGGGTTTTGGG
TGGGCCTAGCGTGTCGGACTCCTATGTTTCGCGTGTCCGGACTCCTACATAGCTTCCCCATTTTTGTCTCCGTTTTGCGG
AAGAAATCGCATCCGGACCACCCGCGGACTGATACTTTTCCGCGTTGGATGGCTCCCGCGGTCCGGATGGATGTGGTTTG
CGGGTCCGCCTAAAAGATGCCCTAAGTACACATTATCGCTTTTGTTCTTTTATTTTCAATAATATCTTATTTTTCTCGAC
CAAGATCGACTAGATAAACCTGGTGGGTAAATATATTATTGCAAGCACCAACAACCATCCAAGTCAACCTCCATCATTGA
CATCACCCGGACTGTTCCCTCAAGAGATGCTTCCAGGAAGGAAATGACATGTGAGTGCTCATATTTTTATTTAGTGATGG
GAGCACTTATGTGTGTTCATTGTCTTACCATTATACATCTCTTTTGCAGGAATTTAACATTCTATTTTAGTTTTTTTAAC
ACAATACAGACGCATGTGTTTATATATACACGCATACATTCATCCATATAAACACGCATGCACACCCTAACCCTATGAGC
ACTTTCGACAGACCGAGCCGACATATTATCTAAGATTAACGAAGTCTTCAAGGGCGCCTCATAGTCGACGGGAGCGTCTC
TTTCCAATGAACTAGCTCAAATATTTCTTTCCTCTAGGGATTGTTGCAGATGTGTAAGCTTGCAAGGGAAACATGATGAG
TGCCAAGGGAGTTTCGTAATCATCACTTACAATTGATAGGAGTCTTACTTAACTCGACACCACCTTGGTCTAGATCATCA
ATTGTACCAAAATTTGGGAACAATGTGATTGTTTTGGTGGTGCTTACACCCTGATCTGCATCTGCGTTGCAGAAGAACTT
CATCATATTGGGAGGCCTTGACATTTCATTCCCCCGATATGCCGGATATTACCGACATGCACGTCATATCGCACTACTTA
ATTGGTGATCCTGTTATCACAATTACAGAATTGATGCGTATCTCTCCATCCTTAGTTAGTGATCTCCATTTACATATGGC
CGGCGTTAGTTTTCTTTTTTGGGACAAAAAAAGATCCGGCGTTCGTGCTGTGGCTTTACAGCTGGGCCCGATTGGGCCCA
ATCGAGCAGACCATTTTGGCGGGCTACTCCGTGTTGGGCTGAATAGTGAAAGGTAGTCTCGGTGGGTGTCCTCTTTCTTT
TAGCCATCACTGTCCTCCCGGTCCCTCTCGCCGCATCTTCTTGTCTGGTCTGGTGGTTGCCGAGTGCATTGACTTCGTCG
GGGAAATGGAGGAGCAGGAGATAAATCTGGCCGTCGCCGGCGTAGGGGAGGTGAAGGAGGGGCTGGAGGAGTCGTTCGAG
CCGACGGAGGACGAGCTGGTGCTGCACTTCCTGCGGCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCGGTGGT
GGAGGCGGACCCGTGCGCGGCGACCCCCTGGGAGCTGCTGGCGCGGCACGGCCTGCTGCGGCGCGGGCACGGCTACTTCT
TCGCGGCGCGGCGGCGGCG---CGGGAAGCGCGCC------CAGGCGCGGCGCACGCCGGAGGGCGGCGGCGGCGCGTGG
ATGCACAGCGGCAACAGGGAGGACCGCCGGTCCGTGACGGAGCTGGGCGTGGTGGCGCGCTGGTCCATGACGCGCTACTG
CTTCTACGCCCGCGACTGGGC---------------------GCAGGGGCGGCGGAGCACCGGCTGGGTCATGTCCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGGCGCGCCGACGACGGCGAGGAGGACCACTACTGGGTGCTCTGCCACGTCCGC
CGGAGCGTCAGGAAGAACCTCAAGCCGCGCTCCCGGAGGCCGTAG-----------------------------------
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>chr3D_929
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----------------------GCCGCATCTTATTGTCTGGTGGTTGCCGAGCG---CCTTGACTTCATC-------GGA
GGG-------AGGG--------------GAGACTTCATCGG--GGAAATGGAGAAGGAGATAAATATCGGCGGCGCCGAC
GGGGTGGAGGTGAGGAAGGAGGCGGGGGAGGAGGAGGAGATAAATCTGGGCGTCGCCGGCGGGGTGTTGGTGAAGAAGGA
GGCAGGGGAGGAGG---AGGAGATCGA---GTTCGACCCGACGGACGACGAGCTGGTGCTGCACTTCCTG----------
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---------------------------------CGGCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCGGTGGT
GGAGGCGGAGCCGTGCGCGGCGACCCCCTGGGAGCTTCTTGCGCGGCACGGCCTGCTGCGGCGCGGGCACGGCTACTTCT
TCGCGGCGCGGCGG---CG---CGGGAAGGGCACC------CAGGCGCGGCGCACCCCGGATGGCGGCGGCGGCTCGTGG
ATGCACAGCGGGAACAAGGAGCACCGCCGGTCCGTGACGGAGCTAGGCGTGGTCGCGCGCTGGTCCATGACGCTGTACTG
CTTCTACGCCCGCGGCGGCGTGAAAGGGGAGGGCGGGGCGCAGCAGGGGCGGCGGAGCACCGGGTGGGCCATGTCCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGCCGGGCCGACGACGGCGAGGAGGACCACTACTGGGTGCTCTGCCACGTCCGC
CGGAGCACCAGGAAGAACGTCAAGCCGCG---------------------------------------------------
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>chr3D_984
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------------------------------GACTTCATCGG--GGAAATGGAG---------------------------
------------------------------GAGCAGGAGATAAATCTGGCCGTCGCCGGCGTAGGGGAGGTGAAGGAGGA
GCTGGAGCAGGAGG---AGGCTGAGGAGTCGTTCGAGCCGACGGAGGACGAGCTGGTGCTGCACTTCCTG----------
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---------------------------------CGGCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCGGTGGT
GGAGGCGGACCCGTGCGCGGCGACCCCCTGGGAGCTGCTGGCGCGGCACGGCCTGCTGCGGCGCGGGCACGGCTACTTCT
TCGCGGCGCGGCGG---CG---CGGGAAGCGCGCC------CAGGCGCGGCGCACCCCGGAGGGCGGCGGCGGCGCGTGG
ATGCACAGCGGCAACAGGGAGGACCGCCGGTCCGTGACGGAGCTGGGCGTGGTGGCGCGCTGGTCCATGACGCGCTACTG
CTTCTACGCCCGCGACTGGGC---------------------GCAGGGGCGGCGGAGCACCGGGTGGGTCATGTCCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACCACTACTGGGTGCTCTGCCACGTCCGC
CGGAGCATCAGGAAGAACCTCAAGCCGCGCTCCCGGAGGCCGTAG-----------------------------------
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>chr3B_984
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------------------------------GACTTCATCGG--GGAAATA------------------------------
------------------------------GAGGAGGAGATAAATCTGGGCGGCGCCGGCGTGG---AGGTGATGGGGAA
GGCGGGGGAGGAGG---AGGAGATCGA---GTTCGAGCCGACGGAGGACGAGCTGGTGCTGCACTTCCTG----------
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---------------------------------CGGCCGCAGCTGCGCGGGTTCGCGCCGCGCGTGGCGGGCGCGGTGGT
GGAGGCGGACCCGTGCGCGGCAACCCCCTGGGAGCTGCTGGCGCGGCACGGCCTGCTGCGGCGCGGGCACGGCTACTTCT
TCGCGGCGCGGCGG---CGGCGCGGGAAGCGCGCC------CAGGCGCGGCGCACCCCGGAGGGCGGCGGCGGCGCGTGG
ATGCACAGCAGCAACAGGGAGGACCGGCGGTCCGTGACGGAGCTGGGCGTGGTGGCGCGCTGGTCCATGACGCGCTACTG
CTTCTACGCCCGCGACTGGGC---------------------GCAGGGGCGGCGGAGCACCGGGTGGGTGATGAGCGAGT
ACGAGATCACGGACCCGCGGTGCTACCGCCGCGCCGACGACGGCGAGGAGGACCACTACTGGGTGCTCTGCCACGTCCGC
CGCAGCGTCAGGAAGAGCCTCAAGCCGCGCTCCCGGAGGCCGTAG---------------------G-------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----S-
-S----S----S-------------------------------------S------------------------------
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-------------S-------------------------------------------------S----------------
----------S---SSSS--------------------------------------------------------------
--------------------------------------------------------------S---------S-------
----------------------------------------------S-------SSS-----------------------
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---------------------------------S--------------------------------S-------------
--SSS--------------------------S-S-SSSSSS------------------SS-------------------
-----------------------------------------------------------S--------------------
------------S---S-S-------------------------------------------------------------
----------------------------------------------------SS--------------------------
--------------------------------S-----------------------------------------------
------------------S---------------SS-SSSSS-SSSS---------------------------------
------------------------------------------------S--S---------------------S------
----------S-----------------------------------------------------S-------S------S
-------------------S-S------------------S---S-----S---S----SSSS-S--SSSSSSSS-----
-------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_332
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------------------------------------------------------------------------AAAGGTAG
CAGCGGTTCGAA--------------------------------------------------------------------
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>reverse_5920
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-------------------------------------------------------------------------------G
GCTGCTCATGGCGATAGAT-------------------------------------------------------------
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---------------------------------------------
