>input_sequence_75504
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-----------------------------------------------ATGATGAAGAGATTTGCGTTCGAGGAGAGGGAG
ATGGCGCGCGTGCTGCTGCTCGTATCACGGGAGCAGG------CGATGCCGATGCCCGC---------------------
---------GCGCGGCGACCGCGCTCCAGAGCGCGCGTTCGTGTGCAAGACGTGCGACCGCGTGTTC-------------
--------------------------------------------------------------------------------
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---------------------------------------------------------CCGTCGTTCCAGGCGCTGGGCGG
GCACCGTGCCAGCCACAAGAAGCCACGTCTGGATGGCGACGGCGATTTCAAGCCCAAGATGCACGGCTGCTCCATCTGCG
GCCTTGAGTTCGCCGTTGGCCAGGCGCTCGGCGGCCACATGAGGCGTCACCGTGCCATGGTTGCTGG---AGGCCATGGC
GTCACGGCGGTGCGGCCGGCGA---TAACGACCAACAACCCTAATGACAATAGCAACGCCGTTGTGGTTGTTGGCAGCGC
AGGCGGCATCAAGCGCGGGCTGTGGCTCGACCTGAACCAACCGCCGTGTGACGATCTGTGTGGCAGCGACGTCGATCACG
GCGAGTGCGGCCATGACGCCGCAACCGCTGGGTACACGTTCCACCAGTTCTTGGATGCCGGCACCATGGCGGTGGACTGC
GTCGGCTACTAG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr1D_1_TraesCS1D01G041700
CTACTTGGGACAGCGATGAGGCGTTTCATGAATGAGCTCATCATTCATCAAGCAGCAACTAATTATTCATGAAGCATAAT
TGTCTTTCCAGATTGCGATGTTGGTCTAGTCATTCATGAGTCACGGCCAAACTCATGGACCTAACACAAGTAAGCTCTGC
AGGATCTATTCATGGGGAGCAGATGAGCCTGGGCTCAAAC-GCAATTACCGTGCAACGTACTCCCTCCGTTCCGAATTAC
TTGTCGCACGTATGGATGTATCTAGATGTATTTTAGTTCTAAATACATCCATTTCAGCGACGAGTAATTTGGGACGGAGG
GAGTACTACTTAGGTAGCTTGGTGGGCCCACCAAGTTCCAGGAAAAGTGCATGGCAATCCTCACTAACACAAAGTATAAT
CCCATTTTAATTAGTTTCCAGTAGTATCATCTTCCATTTTGTGAAATGAAGTTTGATTGTTGTT----GTGCCAGGCTTC
ACTGAATCTT--GGCAAGAATCTGCAAGTGGTGTCTATCCAAATTCATATTGGATACTGAATTTG-----TTTTCTCAGT
TTCTCTGGAACGGGACATGTTTCTAGAAGAGGGAACAGTTGACCCAGAATCTAATTGGCCGCC-------TGCATCATGC
ATCATCATCATCATGCACGATCGTCTGCTACTGCTAGCTGCTGCATATTTATCCATTAGCTAGCCCAAGAGAAAAGAAGA
GGTGCATCATAGTTCAATACTTCCATGGCGCCGCGTTACGTGCACTTGCAGAAG----GCGGCAGATGCTTCTTGGTCTT
GTTGTAGGGGTAGCTTGTGCTGTTTGTTTAATCAGAAACTCATGCAGAGATGGTTAGAGTCACT-------GCTGCCTTG
CTACTGGCTGGTTACTTTA----TGGCTTA-----GTTCCTTGTCTATAAATTCAGATGCAGTCCGATGC-CTTCTTCTT
CATCCATTTGTCCATCT----------CTG---CTTCTTCTTCTTCATCCATTTGTCCATCTG-----------------
-----------------TGCTGCTTCTTTTTCATCCAGTGAGGTGCAATGATGAAGAGATTTGCGTTCGAGGAGAGGGAG
ATGGCGCGCGTGCTGCTGCTCGTATCACGGGAGCAGG------CGATGCCGATGCCCGC---------------------
---------GCGCGGCGACCGCGCTCCAGAGCGCGCGTTCGTGTGCAAGACGTGCGACCGCGTGTTC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------CCGTCGTTCCAGGCGCTGGGCGG
GCACCGTGCCAGCCACAAGAAGCCACGTCTGGATGGCGACGGCGATTTCAAGCCCAAGATGCACGGCTGCTCCATCTGCG
GCCTTGAGTTCGCCGTTGGCCAGGCGCTCGGCGGCCACATGAGGCGTCACCGTGCCATGGTTGCTGG---AGGCCATGGC
GTCACGGCGGTGCGGCCGGCGA---TAACGACCAACAACCCTAATGACAATAGCAACGCCGTTGTGGTTGTTGGCAGCGC
AGGCGGCATCAAGCGCGGGCTGTGGCTCGACCTGAACCAACCGCCGTGTGACGATCTGTGTGGCAGCGACGTCGATCACG
GCGAGTGCGGCCATGACGCCGCAACCGCTGGGTACACGTTCCACCAGTTCTTGGATGCCGGCACCATGGCGGTGGACTGC
GTCGGCTACTAGCGCTCCTCTCCCTCTATTCCCGGGTTTTTGCCGGACAGCA-A--TTAATATCTGTGTGTGTACTTACT
ACTACTTTAGGTTCTCTTTTCTCTCTTT----TTTTCTTCCTGGATTGGATGAAGACATTAATCCATATTTTGTAGTAGT
AGTTTTTTTAAGGTGATTTTGTAATAGTAGCTTTTTTAGGGGTATTTTGTAGTAGTAGATGTGCCTAATGGAAGGGCATG
ACGCACATAGATCATTTCCTTTTGAGATGACAGTGTGCTCAATTTGGTGGCTTGGAGGCCCACCAAAACTAATTACCTTG
GGTTTTGCTGTTATTATTGATGA--AAAAAACCTTTGGTCAAGTGGCCCAATGTAATTATTTTATCATTGTAAAATACAC
ACGAAGCTTATGGTTTTTTCAATTTGGTGCAAGTGAGGATGATATGTTTTCTCCTTC---TTTTTTTGACGTGCAAACCA
GCAGCACTGCCAATTTTCATCAAGATAGAAAAACAAAAAACAGAGTGGC-TAGTTTGTAAGGGAAACTAGGCCGAAAACC
-TACATCGTATGATGATCAAGGGACAACCATGCCAAAGAAAAACCCGACCACGCGATTGATTAAGGGACAATCGTGTAAA
ATCCCCACAACCATGACGATATCGGCCAACTCGAACTCCACCACAAATATGATTACAATCCGGAGATGTGTGGGCGAGCT
CTTCGAATACACCTTCAAGAAGGGCTTTCGCCGAGAGCCACTCACACCAGCCCCACCAGACCCCGGGAAAAGTTCGGCCA
CACCAATAACCACCACGACAACTATCGAACCAACAAGCCACGATCTAGTGGAGAGAAGGAACCCTTCGGCGGCAGCTCCA
AGAGAATCGTCGCCGGTATCCTTCCGTCCCAATTGAACCAAGGCTTTCTCCTAGAGCCCTAAGCCCCTCCAGCTGCCCTA
GGCAAGCACTCCAACCATTTCCAGCAGAGAGGAAGCTGAAGCGAACCTGAACCGACAGTAGCACAC
>chr1A_1
CTACTTGGGACAGCGATGAGGCGTTTCATGA----GCTCATCATTCATCAAGCAGCAACTAATTATTCATCAAGCATAAT
TGTCTTTCCAGATTGCGATGTTGGTCTAGTCATTCATGAGTCACGGCCAAACTCATGGAGCTCACACAAGTAAGCTCTGC
AGGATCTATTCATGGGGAGCAGATGAGCCTGGGCTCAGATAGCAATTACCGTGCAACGTA--------------------
--------------------------------------------------------------------------------
------TACTTAGGTAGTTTGGTGGGCCCACCAAGTTCCAGTTAAAATGCATG---------------------------
------------AGTTTCCAGTAGTATCATCTTCCATTTTGTGAAATGAAGTTCCATTGTTGTT----GTGCCAGGCTTC
ACTGAATCTT--GGCAAGAATCTGCAAGTGGTGTCTATCCAAATTCATATTGGATAGTGAATTTG-----TTTTCTCGGT
TTCTCTGGAACGGGACATGTTTCTAGAAGAGGGAACAGTTGACCCAGAATCTAATTGGCCGCCTGCATCATGCATCATGC
ATCATCATCATCATGCACGATC---TGCTACTGCTAGCTGCTGCATATTTATCCATTAGCTAGCCCAAGAGAAGAGAAGA
GATGCATCATGCATGG----TTCCATGGCGCCGCGTTACGTGCTCCTGCAGAAG----GCGGCAGCTGCTTCTTGGTCTT
GTTGTAGGGGTAGCTTGTGCTGTTTGTTTAATCAGAAACTCATGCAGAGATGGTTAGAGTCACTATCTCATGCTGCGTTG
CTACTTGCTGGTTACTTTA----CGGCCTA-----ATTCCTCGTCTATAAATACAGACGAAGTTCGATGCGCTTCTTCTT
CATCCACCTGTCCATTGCCAATCCCAGCTG---CTTCTTCTTCTTCTTCCATCTGTCCATCTC-----------------
-----------------AGCTTCTTCTTCAGTGATTAGCAA---GCAATGATGAAGAGATTTGCGTTCGAGGAGAGGGAG
ATGGCGCGCGTGCTGCTGCTCGTGTCGCGCGAGCAGG------CGATGCCCATGCCGATGCCATCGTCGGTAGGTGCGAG
TGTGACCGGGCGTGGTGACCGCGCCCCGGAGCGGGCGTTCATGTGCAAGACGTGCGACCGCGTGTTC-------------
--------------------------------------------------------------------------------
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---------------------------------------------------------CCGTCGTTCCAAGCGCTGGGCGG
CCACCGCGCTAGCCACAAGAAGCCGCGGCTTGATGGCGACGGCGACTTCAAGCCCAAGATGCACGGCTGCTCCATCTGCG
GCCTTGAGTTCGCTGTCGGTCAGGCGCTCGGCGGCCACATGAGGCGTCACCGTGCCATGGTTGCAGG---AGGCCATGGC
GTCACGGCCGGGCCGCCGGCGA---AAACGGTCAACAACCTTGACGACAGCAGCAACGCCGTTGTGGTTGTTGGCAGCGG
AGGCGGCATCAAGCCCGGGCTATGGCTCGACCTGAACCAACCGCCGTGTGACGATGTGGGTGGCAGCGACGTCGATCACG
GCGAGTGCGGCCATGACGCCGCAGCCGCTGGGTACACGTTCCACCAGTTCTTGGATGCCGGCACCATGCCGGTGGACTGC
GTCGGCTACTAGC--CCCTCTCCCTCTATTGCCGGTTTTT-GCCAGACAGTACAGTTAATATCATGTGTGTGTACTTAC-
--CACTTTAGGTTCTCTTTTCTCTTTTT----TTCTTC-------TTGGATGAAGACATTAATCCACATTTTGTAGTACC
----TAGTTGA-------------------------------------------------GTGCCTAATGGAAAGTCATG
ACGCACATAGATCATTTCCTTTTGAGATGACAGTCTGCTCAATTTGGTGGCTTGGAGGCCCACCAAAACTAATTACCTTG
GGTTTTGCTGTTATTATTATTGATGAAAAAACCTTTGGTCAAGTGGCCCAATGTAATTATTTTGTCATTGTAAAATACAC
ATGGAGCTCGTGGG-TTTTCCATTTGGTGCAAGTGAGGATGTTATGTTTTCTCTCTTCTTTTTCTTTGACATGCAAGCCA
GGATCACTGCCAA-TTTCATTAAGATAGAAAAACCAAAAACAAAGTGGCCTAGTTTATAAGGGAAGCCAGGCTGAAAATC
ATACACCGTATGATGATTAAGGGACAACCGTGCAAAA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr1B_422
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AGTATCATCTTCCATTTTATGAAATGAAGTTTTTATCTTGTTGTAGGTACCACACTTC
GTAGAATCTCGCGGCAAGAATCTGCAACTGGTGTCTATCCAAATTCGTATTGGATACTGAATTAATATGTTTTTCTGAGT
TTCTTAA------GACATGTTTCTAGAAGAGG-AACAGTTGACCCAGAATCTAATTGGACGCTTG---------------
--CATCATCATCATGCACGATC----------------TGCTGCATATTTATCCATTAGCTAGCCCAAGAGAAAAGAAGA
GATGCAT----CATGG----TTCCATGGCGCCGCGTTACGTGCAGCTAGCTACAGGAAGCGGCAGCTGCTTCTTGGTCTT
GTTGTAGGGGTAGCTTGCGCTGTTTGTTTAATCAGAAACTCATGCAGAGATGGTTAGAGTCAC-------TGCTGCCGTG
CTACTGGCTGATTACTTTAGTTATGGCTTA-----GTTCCTTGTCTATAAATACGGATGCAGTTTGATGCGC-TCTTCTT
CATCCATCTGTCCATAGCCAATCTCAGCTGCTTCTTCTTCTTCTTCTTCCATTTGTCCATCTGATTAAGCTTCTTCTTCC
ATTTGTCCATCTGATTAAGCTTCTTCTTCAGTGGTTAGTGA---GCAATGATGAAGAGATTTGCGTTCGAGGAGAGGGAT
ATGGCGCGCATGCTGCTGCTGGTGTCGCGGGAGCAGG------CGATGCCGGTGGCTGC---------------------
---------ACGCGGTGACCGCGCCCCGGAGCGCGCGTTCGTCTGCAAGACGTGCGACCGCGTGTTC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------CCGTCGTTCCAGGCGCTGGGCGG
GCACCGGGCCAGCCACAAGAAGCCGAGACTGGACGGCGACGGCGACTTCAAGCCCAAGATGCACGGCTGCTCCATCTGTG
GCCTCGAGTTTGCCGTCGGCCAGGCGCTCGGCGGCCACATGAGGCGTCACCGTGCCATGGTTGCAGG---AGGCGATGGC
GTCACAGCGGGTCCGCCGGCGA---AGACGACCGACAACCTTGAGGACAGTAACAACGCCGTTGTGGTTGTTGGCAGCGG
AGGAGGCATCAAGCCCGGGCTGTGGCTTGACCTGAACCACCCGCCGTGTGACGATGTGGGTGGCAGTGACGTCGATCATG
GCGAGTGCGGCCATGACACCGCAGCCGCTGGGTACACGTTCCACCAGTTTTTGGATGCCGGCGCCATGGCGGTGGACTGC
GTCGGCTACTAGC--TCCTCTCCCTCTATTGCCGGGGTTTTGCTGGACAGTACA--TTAATAACTGTGTGTGTACTTAC-
--TACTTTAGGTTCTCTTTTCACTTGTTCTTCTTCTTC-------TTCGATGAAGACATTAATCCACATTTTCTAGTAGC
AGGTTAGATGA-------------------------------------------------GTGCCTAATGGAAGGGCATG
ACGCACATAGATCATTTCCTTTTGAGATGACAGTGTGCTCAATTTGGTGACTTGGAGGCCCACCAAGACTAATTACCTTG
GGTTTTGCTGTTATTATTATTGATGAAAAAACCTTTGGTCAAGTGGCTCAATGTAATTATATTGTCATTGTAAAATATAC
AC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr1A_840
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CT-------GCCGCCTAG
CTACTGGCTGATAACTTTA----TAGCTTATATACATCCGTTGCCTATAAATAAAGATGCAGTTTGCTGCGCTTCTTCTT
CATCCATCTGCCCGTTACCAATCTCAG------------CTTCTTCTTCCTTTTGTCCATCTC-----------------
-----------------AACTTCTTCTTCATTGGTTAGTCATCA--AATGATGAAGAGATTTGAGTTTGAGC---GGGAG
ATGGCGCGTGTGCTACTGCACGTGTCACGGGAGCAACCGATTCCCAAGCCGGCGGCCGG---------------------
---------CCGCGGTGACAACACGCCCGAGCGGGCGTTCGTGTGCAAGACGTGCGACCGCGTGTTCTGTTAGCACTAAT
CTTGTCATGATGTACCAGCATGCATGTTGCATAGGTTAGAGAGTAGCTAGTCTGCTGATGCTTCAGCGGAGCTTCAATGA
AGATGTGTGGAGAAGGCGAGATGCCAGACGGCCGTGAGATACCGCGAGTCCGGCGAGATGCCGATGGCGGCGTGACACCG
CGGTGCCGCGCGAGGCGGCAAGGTCGTGTGATACGGCACACACGTAGATGGCTGAAGCAGGACTGGCCGGCTGGACGGTG
AGTTAGTTTGCATGAATGGAGTCGTCGTTAGCTGCATGTATGGGTTGGTTAGTGGGCTAGCTAAAAGGTCGGTCATGTAG
CCATGCATGCGTTGAGTCTGTTTGTGCATGACCGAGTGTAGGTTAGTTAGCAGGTGATGCATATCCTGGAGAGATTCTAG
GAGGAGATGGTGTTATGCCGACGTGTGTAGGATAGTGGCCGAATGCGTCGGTCAGCCTAGTGTGTGCGTGCGTGAGTTAG
TGGCTGGGTGTGAAGTCATTTGTACTGCCTATTTAAGTTCAACAATTGAATGAGAATGAAGAGGCTGTGAGGGCACAAGT
GGCAAGATGTAGCACTAGTGTTCACCAAGGAGCAGACCCTCTTGGCAAAGCAGCGGCTGTCTTCTCTTTGGTGTATGCGT
GTGTGTGTGTGTGGAGTTTCACCATGACCGTGTAGTGTGTGTTCTTGAGAGAAACAAAGAGAGATGGAGATTGAGTTGTG
AGAGGCAGCTCAAGGTAGAAGAAGAAGTGGCGCTGCGAGGTGAGGCGGCGCTAACAATTGGTATCAGAGCCTTGTTGATC
TATGGCGGCGACGACGGTGCCGGCGGCTATGGTGGCCGGCGTGGCGCTGGGCGCGAGGTGATGGCTGGCAGCGGCACGAT
GCCGCGGGCGGCCGATTGCGGTGCGATGCCGCGAGATGAAGGTGGTGCGATGATCGGCGTCGCGAGGACGTCATCCACGA
CAAGATGGTCCGTGGTGACCGGCGCTGCGACGGCGTCGGTTGTGGCGCGACGGACTTCATGCGAGATGGAGGCCGACGGC
GCAAGAAGGAGGATGGTGGCCATGCGGTGCCGCTATGTGAAGATGGCGGTGCGAAGCTGCCACAAGAAGAGTCGGCGTGA
TGCCGACGACGGTGGTGTGATGCCATCGTCATCATGGAAAGTTGGTGTGAAGCCAACAAAAGTTGCGGTGCGATGCCGCT
TGGCGAAGACGGCGTGGTGATCGGCGCTGCGACAGCGTCGTCCACGTCGAGAGGAGGCCGCCACGAGCGGCAAGTCGGCA
TGGTGACGGACGCTGTGATGGGGTCGTCCACGACAAGATGGTGCATGGTGGTTGGCGCTGCGACGGCGTCGTGCACGGCA
AGGTGTTGCGGGCGATCCGCGAGAGGAACTGGCGGTTTAGCATGACAAGATTAGGGAGGTGATTGTTAGCACTAATCTTG
TCATGATGTACCAGCATGCATGTTGCATAGGTTAGAGAGTAGCTAGTCTGCTGATGCTTCAGCGGAGCTTCAATGAAGAT
GTGTGGAGAAGGCGAGATGCCAGACGGCCGTGAGATACCGCGAGTCCGGCGAGATGCCGATGGCGGCGTGACACCGCGGT
GCCGCGCGAGGCGGCAAGGTCGTGTGATACGGCACACACGTAGATGACTGAAGCAGGACTGGCCGGCTGGACGGTGAGTT
AGTTTGCATGAATGGAGTCGTCGTTAGCTGCATGTATGGGTTGGTTAGTGGGCTAGCTAAAAGGTCGGTCATGTAGCCAT
GCATGCGTTGAGTCTGTTTGTGCATGACCGAGTGTAGGTTAGTTAGCAGGTGATGCATATCCTGGAGAGATTCTAGGAGG
AGATGGTGTTATGCCGACGTGTGTAGGATAGTGGCCGAATGCGTCGGTCAGCCTAGTGTGTGCGTGCGTGAGTTAGTGGC
TGGGTGTGAAGTCATTTGTACTGCCTATTTAAGTTCAACAATTGAATGAGAATGAAGAGGCTGTGAGGGCACAAGTGGCA
AGATGTAGCACTAGTGTTCACCAAGGAGCAGACCCTCTTGGCAAAGCAGCGGCTGTCTTCTCTTTGGTGTATGCGTGTGT
GTGTGTGTGGAGTTTCACCATGACCGTGTAGTGTGTGTTCTTGAGAGAAACAAAGAGAGATGGAGATTGAGTTGTGAGAG
GCAGCTCAAGGTAGAAGAAGAAGTGGCACTGCGAGGTGAGGCGGCGCCAACATGTTCCCGTCGTTCCAGGCGCTGGGCGG
CCACCGCGCCAGCCACAAGAAGCCTCGGCTGGACGGCGACGGCGACCTCAAGCCCAAGATGCATGGCTGCTCCGTCTGCA
GCCTCGAGTTCGCCGTCGGCCAGGCGCTTGGTGGCCACATGAGGCGTCACCGTGCCATGCTTGCAGG---AGGCCGTGGC
GTCGCGACG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>chr1D_998
--------------------------------------------------------------------------------
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--------------------------------------------GCAATGACGAATAGGTTCGCTTTCGAGGAGAAGGAG
ATGGCACGCATGCTTCTGCTTGTGTCGCGGGAGCAGC------CGATGCCCATGCCGATGCCG-----------------
-GTGGCAGTGCACGGTGACCGCGCCCTGGAGCGGGTGTTCGTGTGCAAGACGTGCGACCGCGTGTTC-------------
--------------------------------------------------------------------------------
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---------------------------------------------------------CCGTCGTTCCAGGCGCTGGGCGG
GCACCGGGCCAGCCACAAGAAGCCACGGCTGGACGACGGCGGCGACCTCAAGCCCAAGCTGCACGGATGCTCCGTCTGCG
GCCTCGAGTTCGCCATCGGCCAGGCGCTCGGCGGCCACATGCGGCGCCACCGCGCCATGGCCGCGGGCGGAGGCGGTGGC
CTCATGGCCATGACGCCACCGGCAGCAGCGATAGAGAAGCATGGTG---GCGGCAACGGCGCTGTTGT------------
---CGGCATGAAACGCGGGCTGTGGCTCGACCTGAACCACCCACCTTGCGACGAGTACGGCGCCAGCTGCGAGGGCGACG
ACGAGTGCGGCCACGATGCAGCTGCCGCCGGGTACACGTTCCACCAGTTCCTGGATATCGGCACCATGGCGGTGGACTGC
GTCTAGCTACCCCAT---TCTCCACCTATTACCGGGTTTTTGCCG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr1A_998
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GCAATGACAAAGAGGTATGCTTTTGAGGAGAAGGAG
ATGGCGCGCATGCTGCTGCTCGTGTCGCGGGAGCAGG------CGATGCCCATGCCGATGCCG-----------------
-ATGGCGGTGCGCGGTGACCGCGCCCCGGAGCGGGTGTTCGTGTGCAAGACGTGCGACCGCGTGTTC-------------
--------------------------------------------------------------------------------
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---------------------------------------------------------CCGTCGTTCCAGGCGCTGGGCGG
GCACCGGGCCAGCCACAAGAAGCCACGGCTGGACGACGGGGGCAACCTCAAGCCCAAGTTGCACGGATGCTCTGTCTGCG
GGCTGGAGTTCGCCATCGGACAGGCGCTCGGTGGCCACATGCGGCGCCACCGTGCCATGGCCGTAGGCGGAGGTGGTGGC
GTCATGGCTATTACGCCGCCGACAGCAGCGATCAAGAAGCACGGCGACAGCAGCGACGACGCCGTTGT------------
---CGGCATGAAGCGTGGGCTGTGGCTCGACTTGAACCATCCACCTTGCGATGAGTACGGCACCAGCAGCGAGAGCGACG
ACGAGTGCGGCCACGACGCAGCTGCCGGCGGGTACACGTTCCACCAGTTCCTGGATACCGGCACCATGGAGGTGGACTGC
GTCTAGCTACCCCAT--CTCCCACTCCGTTGCCGGGTTTTTGCCGGATAGTACA--ATATTTTCC-TGTGTGTACTT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr1B_998
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GCAATGATGAAGAGGTTTGCTTTCGAGGAGAAGGAG
ATGGCACGCGTGCTTCTGCTTGTGTCGCAGGAGCAGG------CGATGCCCATGCCGATGCCG-----------------
-ATGGCGGTGCGCGGTGACCGTGCCCCAGAGCGGGTGTTCGTGTGCAAGACGTGCGACCGCGTGTTC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCGTCTTTCCAGGCGCTGGGCGG
GCACCGGGCCAGCCACAAGAAGCCGCGGCTGGACGACGGCGGCGACCTCAAGCCCAAGCTCCACGGATGCTCCGTCTGCG
GTCTTGAGTTCGCCATCGGCCAGGCGCTCGGTGGCCACATGCGGCGTCACCGCGCCATGGTTGCAGGCGGAGGCAGCGGC
GTCATGGCCATGACGCCGCGGACAGCAGCGATCAAGAAACACAACGACAGCAGCGACAATGCCGTTGT------------
---CGGTATGAAACGCGGGCTGTGGCTCGACCTGAACCACCCACCTTGCGACGAGTATGGCGCCAGCTGCGAGGGCGACG
ACGAGTGCGGCCACGACGCAGCCGCCGCCGGGTACACGTTCCACCAGTTCCTGGATATCGGCACCATGGCGGTGGACTGC
GTCTAGCTACCCCAT--CTCCC--CCTATTGCTGGGATTTTGC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr1B_998
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GCAATGACGAAGAGGTTTGCTTTCGTGGAGAAGGAG
ATGGCGCGCATGCTGCTGCTGGTGTCACCGGAGCAGG------CGATGTCCACACCGATGCCG-----------------
-ACGGCGGTACGCGGTGACCGCGCCCCGGGGCGGGTGTTCGTGTGCAAGACGTGCGACCGCGTGTTC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCGTCGTTCCAAGCGCTGGGCGG
GCACCGGGCCAGCCACAAGAAGCCACGGCTGGACGACGGCAGCGACCTCAAGCCCAAGCTGCACGGATGCTCTGTCTGCG
GGCTGGAGTTCGCCATCGGCCAGGCGCTCGGTGGACACATGCGGCGCCACCGTCCCATGGCCGCGGGCGGAGGCGGCGGT
GTCATGGCCATGACGCCACCGATAGAAGCGATCAAGATGCACGGCGACAGCAGCGACGACGCCGTTGT------------
---CGGCATGAAGCGTGGGCTGTGGCTCGACCTGAACCATCCACCTTGCGATGAGTACGGCGCCGGCAACGAGAGCGAGG
ACGAGTGCGGCCACGACAGAGCTACCGCCGGGTACACGTTCCACCAGTTCCTGGATACCGGCACCATGGCGGTTGACTGC
GTCTAGCTACCGCAT--CT-TCACTCCGTTGCCGGGTTTTTGCCGGATAGTA-A--TATTTTCCTGTGTGTG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>SNPs
-------------------------------SSSS-----------------------------------S---------
-----------------------------------------------------------S--S-----------------
-------------------------------------S-S--------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-----------S-----------------------SS---S------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------SSS-------------------------------------------------------
-S--------SSS-SSSSSS-------------------------S-------------------S--------------
--------------------------------------------------------------------------------
----------------------------------------------------S----------S----------------
-------S-------SS-----------------------------S---------------------------------
-----------------S---S------SS-SSSSS-----SSS------------------------------------
-----------------------S--------------------------------------------------------
---------------S--------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S--------------------S-----------------S----------------------------------
----------------S-----------------------------------------------S---------------
-------------S-----------S--------------S--------S-----------------------------S
-------------------------------------------------------S--S---------------------
--------------------------------------------------------------------------------
-------------SS---------------S-------------------S----------------------------S
SS----------------------S---------S-SSSSSSSSS---------------------S------------S
--S--SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
--------------------------------------------------------------------------------
------------------SS-------------------------------------------S----------------
---S----SS---SS-----S--------------------S-----------SS-S------S------S-----S---
-S-S---------S------S-------------S-------S-------------S--------S-S----S-----S-
-----S-----------S-----------S---S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_233
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CAACGTACTCCCTCCGTTCC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_4574
--------------------------------------------------------------------------------
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-------------TGACGATATCGGCCAACTCG-----------------------------------------------
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------------------------------------------------------------------
