>input_sequence_75435
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-------------------------------------------------TCTCCA-CAGCAGTTCAGCACACACCTTGTA
CTACCACTGCCTAGCTAGATACGCACCGAGCACCTACGTACGTACGTGTAAGCATCTCGTCTCGCGGTTTAACGTTAGCT
AGCTCCATCCATCATCCATGGCGGCCCGCGTCGGCGCTGTCGTGCTCTGCATGTTCTTGATCGTTAGCGCGGGGCTCGTG
GCCACGCCGACCGAAGCTCGCGCCGTGCCGGACGTCGTCTACTCTGCTGCGGCCGGCAATGCGGCCGGCGGTGGCATCCG
TCGGGGCAGGTGGAACAGCGCGAGGAGGCTGGAGGGAGACGCCGCCCGGAAGCGGGAGGTACCCGGCGGCCCAGACCCGC
AGCACCATCACTAGACACAAGC---GTCAGCTGCATGCGACGTGCCAACCCAACGTATTACGTATACCGTATATGATACG
GATTCTCGTGGAGCGTCGGGTGGATCA-----TACG--------------------------------------------
-------------------------------------------ACGTAGTACCTCGCTGTTGT----ATCTCTGGGATTG
TGGATC-GGACCGGAGAGGTGAAATAAGTATGGTTTGCATTTGGTTTAAGTATAGTCCACACATGGTGCA---ACCCAGT
TGTAATAAA-----------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G292800
GCTATACATGTATGTACATATTCTGCCTTTGTTCAATTTGGACGTCAACTCTCCCTTGACCATTGATTTCAGACGTTATC
ACGAAAAATATTTAATATATGATGGTATGTCATGACTTTTGTTGCCAAATTCGGTACAGTAGCATATTGTCCATTTGGAA
AACTTGAAGAGTTTCCTTTTTTGCATTATTGGCCTCCTTTGACTGGCTTTGGCACATTGGGCTAGTAGAATCATCTCAAG
TAGCCACAAATGTATGAAGACATGGTTGAAAATATATGCTACCCACATTTAAGCATATCTGCGGTCAAAAGCTTCAAAAG
ATTATGTTCATGCATGCATTGCATGTATTCCAAAACGCTGGGCACCATACATTGTCAAATATCATGGAAATTCTCAGGAG
CATGCATTATTCCAGTTTGCAGAAGCAGACAGGCCACACGTCAGCTAGCTAGCTACTTTCAGTAGTTCAAATCGTGGCTT
ATATCCTTTCATTCTTGGATACATCGTCCACATACACGATGATAGCTGAGAG--CGGCGGTGGCATCCC-CCCTGCTTAT
TGGCGCACTGATGCATGTGGAGTGGATTATTGCGGGCAATTAAGTAAGCAAGAGGCCAGCGTCGACCGGAACATAGGAGA
AGAACATTGGCTCATGGCGTGCGTAGGCGAGCACGGACACGGAGCATATGCTAATGCAGAAAGGGAAAAAAGAT-GGAGG
GTCAGTTATGATGGACGCATCATCTTCTTAGCCGGT-GGCAATGGTGGCCACTCGGACAAGATCACGCCAGGTTCATCCA
ACATTACTCCAACGCCACCCCTACGTGGCCCTCTTTGTCCTAGGCAGAGGCAGGCACACAATGCGCGCGGTGGCTCCACT
ACTCCCACCAATTATCCGCAACAACGGACGGACCCCGGGCCCACGTTGTAACCGCCGGTATGGTCCATCTCATCGA---G
CTAGCTCGTCCTATAAATAGAGAGCGGCGCCTGGCCA-TGAAGGATATCTCTCCA-CAGCAGTTCAGCACACACCTTGTA
CTACCACTGCCTAGCTAGATACGCACCGAGCACCTACGTACGTACGTGTAAGCATCTCGTCTCGCGGTTTAACGTTAGCT
AGCTCCATCCATCATCCATGGCGGCCCGCGTCGGCGCTGTCGTGCTCTGCATGTTCTTGATCGTTAGCGCGGGGCTCGTG
GCCACGCCGACCGAAGCTCGCGCCGTGCCGGACGTCGTCTACTCTGCTGCGGCCGGCAATGCGGCCGGCGGTGGCATCCG
TCGGGGCAGGTGGAACAGCGCGAGGAGGCTGGAGGGAGACGCCGCCCGGAAGCGGGAGGTACCCGGCGGCCCAGACCCGC
AGCACCATCACTAGACACAAGC---GTCAGCTGCATGCGACGTGCCAACCCAACGTATTACGTATACCGTATATGATACG
GATTCTCGTGGAGCGTCGGGTGGATCA-----TACG--------------------------------------------
-------------------------------------------ACGTAGTACCTCGCTGTTGT----ATCTCTGGGATTG
TGGATC-GGACCGGAGAGGTGAAATAAGTATGGTTTGCATTTGGTTTAAGTATAGTCCACACATGGTGCA---ACCCAGT
TGTAATAAACAAGCTCATGCTGTTGAAACACGCAGATAATAATACTTCTGTGTAGCAATGATCTAC--TGTATCAGCGAA
GACTGGATTGTCCTTTTAAGCTTGGTCA--TCCTACGTGGTGTTGGGATAATATTATTCC---TTACGTACGGTGTCGA-
-----TCGTCCACTTGAGAGATCGATCATGGAATCATGCATGCACGATGAAACATCTGCATGCGGATCTCCTTTTATGGA
CTTGTCGACGCACATTATTTCATTTT-------ATATACTAAAAAAAGAAGTACGTGCAACTTTCCAGTGAGTGTGACCG
TAAACCGACTGTAATCACGAACCACCAATGGGGTCAGCGGCGTGTCATCTGACTCATCATGGTAGGCTCAGAAAGACCA-
--TTGAGTAGT-GAGAGATACTTTCTTTTAGCGCCGGCGGGCGAAAACCGGTCCAGTCGCGCCT-C-AGGAGCCCGTTTT
TTATTGGGTTGGACCGAAATGGAGGCAGGCGGACCCAGGCCGAACCCGGCGCGCTGGGA-G-CGCC--------------
------GGGCGAGCAATTTTGGCGTGAACTAACCGCGGGC------------CCGCCGCGTCAGCGACA--CTCGCCTCG
TCGTCCTCACAACGTCTCGGT---TTCCCGC-GGGGAATCAATGCCAAGGCTG-CCGCCGGTCAGCCTTCCATTGATTCC
TCACGGACGACGCTTTCTCAC-GGGCGGCGCGGCGACG-CCCCCCTCCCGCCACGCGTACACACGGCGCC---CGGC---
---------TATAAAAGC-GACGGCTCCCCCTCGCCT---------------------CTGGCCACA-CCC--C----GC
CGTGCTCTGCCTCTCTCTCTTCGTGCGCAGCC---GCCGCC-GACGAT--------------CCTCCCCTCTCTCCCC-A
AGCCCAGCATCGATGATGGGCGAGCGATTCCCCGACGACGCGGCGGCGGCCAACGGCTTTGGCCGCCGCTCGCTGCACGG
GTGGGAGGCGTATCTTCTCTTCAAGGCCAACATCCCGGCGCCGCCCGACATGCGCGCAGGGCCGGGCGGGTGGAGGCTCA
GTGCCGGTGGCGTCCCCATTC
>chr3B_1
GCTATACATGTATGTACATATTCTGCCTTTGTTCAATTTGGACGTCAACTCTCCCTTGACCATTGATTTCAGACGTTATC
AAGAAAAATATTTAATATATGATGGTATGTCATGACTTTTGTTGCCAAATTCGGTACAGTAGCATATTATCCATTTGGAA
AACTTGAAGAGTTTC-TTTTTTGCATTATTGGCCTCCTTTGATTGGCTTTAGCACATTGGGCTAGTAGAATCATCTCAAG
TAGCCACAAATGTATGAAGACACGGTTGAAAATATATGTTACCCGCATTTAAGCATATCTGCGGTCAAAAGCTTCAAAAG
ATTACGTTCATGC---------ATGTATTCCAAAACGCTGGGCACCATACACTGTCAAATATTATGGAAATTCTCAGGAG
CATGCATTATTCCAGTTTCCAGAAGCAGACAGACCACACGTCAGCTAGCTA----CTTTCAGTAGTTCAAATCGTGGCTT
ATATCCTTTCATTCTTGGATACATCGCCCACATACACGATGAGAGCTGAGAGTGCGGCGGTGGCATCCCTCCCTGCTTAT
TGGCGCACTGATGCATGTGGAGTAGATTATTGTGGGCAATTAAGTAAGCAAGAGGCCAGCGTCGACCGGAACATAGGAGA
TGAACATTGGCTCATGGCGTGCGAAGGCAAGCACGGACATGGAGCATATGCTAATGCAGAAAGGGAAAAAAGATGGGAGG
ATCAATTATGATGGACGCATCATCTTCTTAGCCGGTGGGCAATGGTGGCCACTCGGACAGGATCACGCCAGGTTCATCCA
ACATTACTCCAACACCACCCCTACGTGGCCTTCTTTGTCCTAGGCAGAGGCAGGCACACAATGCGCGCGGTGGTTCCGCC
T---CCACCAATTATCCGCAACAACGGCCGGACCCCGGGCCCACGTTGTAACTGCCAGTATGGTCCATCTCATCGA---C
CT----CGTCCTATAAATAGAGAGCGGCGCCTGGCCA-TGAAGGATATCTCTCCATCAGCAGTTCAGTACACACCTTGTA
CTACCACTGCCTAGCTAGATACGCACCGAGCACCTACGCACGT----GTACGCACCTCGTCTCGCAGTTTAACGTTAGCT
AGCTCCATCCATCATCCATGGCGGCTCGCATCGGTGCTGTCGTGCTCTGCATGGTCTTGATCGTCAGCGCGGGGCTCGTG
GCCACGCCGACCGAAGCTCGCGCCGTGGCGGACGTCGTCTACGCTGCTGCGGCCACCAATGCGGCCGCCGGTGGCATTCG
TCGGGGGAAGTGGAACAGCGCGAGGAGGCTGGAGGGAGACGCCGCCCGGAAGCGGGAGGTGCCCGGCGGCCCAGACCCGC
AGCACCATCACTAGACACACAAGCGGTCAGCTGCATGCGACGTGCCAAGCCAACGTACGTACTACGTGATGCGAATTCCC
GTA---CGTGGATCATCGGTTGGACCATACATACTACTCCCTCTGTTCCAAATTAGACGATTCAACTTTGTACTAGCATT
ACTATAAAGTTAATATAAAGTTGGGTCATCTATTTTGGAACGAAGGGAATACGTCACTGTTGTATACATATCTGGGATTG
TGGATCGGGACCGGAGAGGTAAAATAAGTATAGTTTGCATTTGGTTTAAGTATAGTCTACACATGGTGCGACGACCTAGT
TGTAATAAACAAGCTCAGGCTGTTGAAACACGCAGATAATAATACTTCTGTGTAGCAATGATATGC--TGTATGGGTGAA
GACTGGATAGTCCTTTTAAGCTTGGTCA--TCCTACGTGGTGTTGGGATAATAGTATTCT---TTACGTACGGTGTCGAC
TGCGATCGTCCACTTGAGAGATCGATCATGGAATCATGCATGCACGATG-AACATCTGCATGCGGATCTCCTTTTGTGGA
CG-GTCGACGCACATTATTTCATTTT-------ATATTTGA----AAAAAGTACGTGCAACTTTGCAGTGAGTGTGACCG
TAAACCGACTGTAATCACGAACCGCCAATGGGATCAGCGGCGCGTCATCTGACTCATCGTGGTAGGCTCAGAAAGACCA-
--GTGAGTAATGGAGAGATACTTT--------------------------------------------------------
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---------------------
>chr3A_9
--------TGTATGTACATATTCTGCCTTTGTTCAATTTGGACGTCAACTCTCCCTTGACCATTGATTTCAGACGTTATC
AAGAAAAGTATTTAATATATGATGGTATGTCATGACTTTTGTTGCCAAATTCGGTACAGTAGCATATTATCCATTTGGAA
AACTTGAAGAGTTTCTTTTTT-GCATTATTGTCCTCCTTTGACTGGCTTTGGCACATTGGGCTAGTAGAATCATCTCAAG
TAGCCACAAATGTATGAAGACACGAT-----ATATATGCTACCCACGTTTAAGCATATCTGCGGTCAAAAGCTTATAAAG
ATTATGTTCATGCATGC-----ATGTATTCCTAAACGCTGGGCACCATACATTGTCAAATATCATGGAAATTCTCAGGAG
CACGCATTATTCCAGTTTCCAGAAGCAGACAGTCGACACGTCAGCTAGCTA----CTTTCAGTAGTTCAAATCGTGGCTT
ATATCCTTTCATTCTTGGATACATCGTCCACATACACGATGAGAGCTGAGAG--CGGCGGTTGCATCCCTCCCTGCTTAT
TGGCGCACTGATGCATGTGGAGTGGATTATTGTGGGCAATTAAGTAAGCAAGAGGCCAGCGTCGACCGGAACATAGGAGA
TGAACATTGGCTGATGGCGTGCGTAGGCAAGCACGGACACGGAGCATATGCTAATGCAGAAAGGGGGAAAAGAT-GGAGG
ATCAATTATGATGGACGCA-CATCTTCTTAGCCGGT-GGCAATGGTGGCCACTCGGACAGGATCACACCAGGTTCATCCA
ACACTACTCCAACACCACCCCTACGTGGCCCTCTTTGTCCTAGGCAGAGGCAGGCACACAATGCGCGCGGTGGTTCCACC
---CCCACCAATTATCCGCAACAACGGCCGGACCC-GGGCCCACGTTGTAACTGCCGGTATGATCCATCTCGTCGAGCTC
CT----CGTCCTATAAATAGAGAGCGGCGCCTGGCCAATGAAGGACATCTCTGCACCAGCAGTTCAGCACACACCTTGTA
CTACTACTGCCTAGCTAGATACGCACCGAGCACCTACGTACGT----GTACGCATCTCGTCTCGCAGTTTAACGTTAGCT
AACTCCATCCATCATCCATGGCGGCCCGCGTCGGCGCTGTCGTGCTCTGCATGCTCTTGATCGTCAGCGCGGGGCTCGTG
GCCACGCCGACCGAAGCTCGCGCCGTGCCGGACGTCGTCTACGCTGCC------------GCGGCCGGCGGTGGCATCCG
TCGGGGCAGGTGGAACAGCGCGAGGAGGCTGGAGGGAGACGCCGCCCGGAAGCGGGAGGTGCCCGGCGGCCCAGACCCGC
AGCACCATCACTAGACACAAGC---GTCAGCTGCATGCGACGTGCCAACCCAACGTATTACGTATTCCGTATATGATACG
GATTCTCGTGGAGCGTCGGCTGGATCATACTGTACG--------------------------------------------
-------------------------------------------ACGTAGTACCTCGCTGTTGT----ATCTCTGGGATTG
TGGATC-GGACCGGAGAGGTAAAATAAGTATAGTTTGCATTTGGTTTAAGTATAGTCCACACATATGGT-ACGACCCAGT
TGTAATAAACAAGCTCAGGCTGTTGAAACGCGCAGATAATAATACTTCTGTGTAGCAATGATCTACTGTGTATCCGTGAA
GACTGGATTGTCCTTTTTAGCTTGGTCATCTCCTACGTGGTGTTGGGATAATATTATTCGTTATTACGTACGGTGTCGAC
TGCGATCGTCCACTTGAGAGATCGATCATGGCACCATGCATGCACGATG-AACATCTGCATGCGGATCTCCTTTTGTGGT
CG-GTCGACGCACATTATTTCATTTTGTTTATAATATATTC----AAAAAGTGCGTCTAACTTTCAAGTGAGTGTGACCG
TAAACCGACTGTAATCACGAATCGCCAATGGGATCAGCGGCGCGTCATCTGACTCATCGTGGTAGGCTCAGAAAGACCAG
CAGTGAGTAATGGAGAGATACTTT--------------------------------------------------------
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>chr1D_1965
TTTTT---------------------------------------------------------------------------
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---------------------------TTGT-GCCGGCGTCCAAAAATCGGCCCAGTCGCGT-C-CCAGGAGCCCGTTTT
TCGCCGGTTTGGGCCCTAACTGGCGCCGGTGGACCCAGGCCGAACCCGGCACGCTGGGG-GGCGCCCGGGGGCTCCG---
------GGGCAAGCGATTTTGGCGCGAACTAACCGCGGGC------------CCGCGGAGTCAGCGACA--CTCGCCTCG
TCGTCCTCAGAACGCCTCGGT---TTCCCGC-GGGGAATCAATGCCAAGACTG-CCGCCGGTCAGCCTTCCATTGATTCC
TCACGGGCGGCGCTTC---AC-GGGCGGCGCGACGACGCCCTCCCTCCCGCCACGCGTACACACGGCGCC---CGGCGGC
---------TATAAAAGC-ATCGCCTCCCCCTCGCCT---------------------CCGGCCACA-CCC--C----GT
CGTGCCCTGCCTCTCTCTCCCCGTGCGCAGCC---GCCGCC-GACGAT--------------CCTCCCCTCTCTCCCC-A
AGCCCAGCCGCGGTGATGTGTGAGCGTTTCCCCGGCGACAGATCGGCGGCCAACGGCTTCGGCCGCCGCTCGCTGCACGC
GTGAGAGGCGTATTTGTTCTTCGAGGCCAACATCCCGGTGCCTCCAGACATGCGCGCAGGGCCGGGCGGATAGAGGCTCA
GCGCTGGTGGCGTCCCCATTC
>chr7B_1965
TTTTT---------------------------------------------------------------------------
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---------------------------TTAGCGCCGGCGCGCAAAAATCGGCCCAGTCCCGCCC-C-ATGAGCCTGTTTT
TCGCCGGGTTGGACCGAAATTGGTGCCGAAGGACCCAGGCCGAACCCGGCGCGCTGGGG-G-CGCTCGGGGGCACCG---
------GGGCGACCGAATTTGGCGCGAAAGGAAGGCGGGC------------CCACCGAGTCAGCGACCAATGCGCCTCG
TCGTCCTCAT--CACATCGAA---TTCCCGC-GGGGAATCAATGCCAAGGCTGCCCGCCGGTCAGCCTTCCATTGATTCC
TCACGGGCGGCGCG------------GGCGCGGCGACGCCACACCTCCCGCCACGTGTACACACGGCGCC---CACCCCC
CTGCCGCTATATAAAAGC-CACACCTCCCCCTCGCCTGAGCCACTCCACCCACAGCCGCCGATCACT-CGC--C----GT
CGAG--------CTCTCTCCCCGTGCGCCGAC---GCCGCC-AAGCTCTCTCCCTGTTCCCCCCTTCCCTCTCTTTCC-A
AGG----------CAATGGGCGAGAGGTTCCCCGGCGATGGCGCGGAGGCCAATGGC-TTCGGCCCCGCTCGTTGCACAA
GTGGGAGGCGTACCTCCTGTTCGAGGCCAATGTGCTGGCGCCACCGGACATGCGTGCGCCGGGGCGGT----GGAGCTCA
GCGCAGGTGGCGTCCCCAT--
>chr4D_1969
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-------------------------TTTTAGCGCCGGCGGGCGAAAATTGGCCCAGTCGCGCCC-CCAGGAGGCCGTTTT
TCGCCGGGTTGGGCCAAAATTTGGGCCGGTGGACCTAGGCCGAACCCGATGCGCTGGGG-GGCGCCCCCAGGCGCCG---
------GGGCGAGCGATTTTGGCGTGAACTAGCCGTGGGC------------CCGCCGCGTCAGCGACA--GTCGCCTCG
TCCTCCTCATAACACCTCGGT---TTCCCGC-GGGGAATCAATGCCAAGGCTG-CCGCCGGTCAGCCTTCCATTGATTCC
TCATGGGCGGCGCTTCCTCAC-GAGCGACGCGGTGACG-CCCCCCTCCCGCCACGCGTACACACGGCGCC---TGGC---
---------TATAAAAGC-GGCGCCTCCCCCCCGCCT---------------------CTGGCCACA-CCT--C----AC
CGTGCTCTGCCTCTCTCTCCCCGTGGACACCC---GCCGCC-GACGAT--------------CCTATCCTCTCTCCCTGA
AGCCCAGCATCGATGATGGGCGAGCGATTCCCCGGCGATGCGGCAGAGGCCAACGGCTTCGGCCTACGGTCGCTGCACGC
GTGGGAGGCGTATCTTCTCTTCGAGGCGAACATCTCGGCGCCGCCCAACATGCGCGCAGGGCCGGGCGGGTGGAGGCTCA
GCGCCGGTGGCGTCCCCATTC
>chr5A_1969
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-------------------------TTTTAGCGTTGGCGGACGAAATTTGGCTCAGTCACGTCC-CTAGGA-GCCCTTTT
TCGTCGGATTGGGCCGAAATTAGGGCCGGCGGACCCAGGTCGAACCCAACGCGCTGGGG-GAT----------GCTG---
------GCGCAAGCGTTTTTGGCATGAACTAACCGCGGGC------------CCGCG-CGTCAGCGACA--GTTGCCTCG
TCGTCCTCAAACCGCCTCGGT---TTCCTACGGGGGAATCAATGCCAAGGCTG-CCGCCGGTCAGCCTTCCATTGATTCC
TCACGGACGGCGCTTCCTCAC-GGGTGGCGCGGCGATG-CCCCCCTCCCGCCACGCGTACACACGGTGCC---CGGT---
---------TATAAAAGC-GACGCCTAGCTCTCGCCT---------------------CTGGCCACA-CCC--T----GT
CGTGCTCTGCCTCCCTCTCCCCGTGCGCACCT---GCCGCC-GACGAT--------------CCTCCCCTCTCTTCCC-A
AGCCGAGCATCGACAATGGGCGAGCGTTTCCCCGGCGACACGGCGACGGCCAACGGCTTTGGCCGCCGCTCGCTGAACGC
GTGGGAGGCGTACCTCCTCTTCGAGGCGATCATCCCGGCGTCGCCCGATATGCGTGCAGGGCCGAGAGGGTGGAGGCTCA
GCGCCGGTGGCGTCCCCATTC
>chr6D_1969
TTTTCA--------------------------------------------------------------------------
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------------------------------GCGCCGGCACCCAAAAATCAGCCCAGTCGCGCCC-CCAGGAGGCCGTTTT
TCGCCGGTTTGGGCCGAAACTGGCGCCGGCGGACCCAGGCTGAACCCGGCGCGCTGGGG-G----------GCGCCG---
------GGGCGAGCGATTGTGGCGTGAAAGAGCTGCAGGC------------CCGCTGAGTCAGCGACA--CTCGCCTCG
TCGTCTTCAGAACACCTCGGT---TTCCTGC-GGGGAATCAATGGTAAGGCTG-CCGCCTGTCAGCCTTCCATTGATTCC
TCACGGGCGGCGCTTC---AC-GGGCAGCGCGGCGACG-CCCCCCTCCCGCCACGCGTACACACGATGCC---CGAC---
---------TATAAAAGC-AACGCCTCCCCCTCGCCT---------------------CTGGCCACA-CCCGCC----GT
CGAGCTCTGC--CTCTCTCCCCGTGCGCAGCC---GCCGCC-GACGTT--------------CCTCCCCTCTCTCCCC-A
AGCCCATCCGCGACGATGGCCGAGCGGTTCCCCGGCGATGGGGCGACGGCCAACGGCTTCGGCCGCCGCTCGCTGCACGA
GTGGGAGGCGTATCTGTTCTTCGAGGCGAACATCCCGGCGCCGCCGGACATGCGCGCAGGGCCGACGGGGTGGAGGCTCA
GCGCCGGTGGCGTCCCCATTC
>chr2D_1969
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-------------------------TTTTAGCGTCGGCGGGCGAAAT-CGACCCAGTCGCGCCTTC-ATGAACCCGTTTT
TCGCCTGGTTGGGCCGAAATTGGGGCCGACGGACCCAGGCCGAATCCGGCGCACTGGGGGG-CGCCTGGGAGCGCCG---
------GGGCGAGCGATTTTGGCGCGAACTCACCGCGGGC------------CCGCCACGTCAGCGACA--CTCGCCTCG
TCGTCCTCACAACGCTTCGGTTTCTTCCCGC-AGGGAATCAATGCCAAGGCTG-CCGCCGGTCAGCCTTCCATTGATTCC
TCATGGGCGGCGCTTCCTCAC-CGTCGGCGCGGCGACGCCCCACCTCCCGCCATGCGTACACACGGTGCC---CGGC---
---------TATAAAAGC-GACGCCTCGCCCTCGCCT---------------------CTGGCCACA-CCC--C----GC
T---------CTCTCTCTCCCAGTGCCCAGCC---GCCGCC-GACGAT--------------CCTCCCCTCTCTCCCC-A
AGCCTAGCATCGACGATGGCCGAGCGATTCC--------GCGGCGGCGGCCAACGGCTTCGGCCGTCGCTCGCTGCACGT
GTGGGAGGCGTATCTGCTCTTCGAGGCCAACATCTCGGCGCCGCCTGACATGCGCGCAGGGCCGGGCGGGTGGAGGCTCA
GGGACGGTGGTGTCCCCATTC
>chr2D_1969
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-------------------------TTTTAGCGCTGGCAGGCGAAAATCGGCCTAGTCGCGCCC-CCAGGAGCCCGTTTT
TCGCCGGGTTGGGCCGAAATTGGGGCCGGCGGACCCAGGCCGAACCCGGCGCGCTGGGG-G-CGCCTGGGAGCGCCG---
------GGGCGAGCGATTTTGGCGCGAACTAACTGCGGGCCCAACTGCAGGCCCGCCGAGCCAGCGGCA--CTCGCCTCG
TCATCCTCACAATGCGTCGGT---TTCCCAC-GGGGAATCAATGCCAAGGCTG-CTGCCGGTCAGTCTTCCATTAATTCC
TCACGGGCAGCGCTTCCTCAC-GGGCGGCGCGGCAACACCCTCCCTCCCTCCACGCGTACACACAACGCC---GGGC---
---------TATAAA-TC-AACGCCTCCCCCTCACAT---------------------CTGGCCACA-ACC--C----GC
CGTGCTCTGCCTCTCTCTCCCCGTGCGCAGCC---ACCTTC-GACGAT--------------CCTCCCCTCTCTCTCC-A
AGCCCAGCCGCGACGATGGGCGAGCGATTCCCCGGCGATGCGGAGGCGGCCAACGGCATCGGCCACCGCTCGCTGCATGG
GTGGGAGGCGTATCTTCTCTTCGAGGCCAACATCCCGGCGCCACCTGACATGCGCGCAGGGCCGGGCAGATGGAGGCTCA
GCGCCGCTGGCGTCCCCATTC
>chr2A_1980
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------------------------------------GCGGGCGAAAATTGGCCCAGTCGCGCCC-CCAGGAGCCTGTTTT
TCGCCAGGTTGGGCCAAACTTGGGGCCGGCGGACCCAGGCCGAACCCGGCACGCTGGGG-G-CGCCTGGGAGCACCG---
------AGGCGAGCGATTTTGGCGTGAACAAACCGCGGGCCCGT-----------CG-CATCAGCGACA--GGTGCCTCG
TCGACCTCACACCTCCTTGGT---TTCCCAC-GGGGAATCAATGCCAAGGCTG-CCGCCGGTCAGCCTTCCATTGATTCC
TCACGGGCGGCGTTTCCTCAT-GGGCTGCGCGGCGATGCCCCCCCTCCCGCCACACGTACACACGACGCC---CGGC---
---------TATAAAAGCCGATGCCTAGCCCTCG-CT---------------------CTGGCCACT-CCC--T----GC
CGTGCTCTGC--CTCCCTCTCCCATCTCTCCCCAAGCCGCC-GACGGG--------------CCTCCCCTCTCTCCCC-A
AGCCAAGCATC-ACGATGCATGAGCGCTTCCCTGGCAATGCGGCGGCGGCCAATGGTGGCGTCCGCCACTCGCTGCATGC
GTGGGAGCCGTACCTCCTCTTCGAGGCGAACATCCCGGCGCCGCCCGACATGCGCGCAGGGCCGGGCGGGTGGAGACTCA
GCGCCGGTGGCGTCCCCAT--
>chr3A_1996
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----------------------------------------------------CCAGTCGCGCCC-CCAGAAGCCTGTTTT
TCGCCGGTTTGGGCCAAAATTGGTGCCGACAGACCCAGGCCGAATCCGGCCCACTGGGG-G-CGCCCGGG-GCGCCG---
------GGGCAAGCGATTTTAGCGCGAACTAACTGCGGGC------------CCGCCGAGTCAGCGACA--ATCGCCTCG
TCGTCCTCACAACGTCTCGGT---TTCCCGT-GGGGAATCAATGCCAAAGCTG-CCGCATGTCAGCCTTCCATTGATTCC
TCACAGGCGGCGCTTCCTCACGGGGCGGCGCGGTGACACCCTCCCTCCCGCCACGCGTACACATGGTGCC---CGGCCGC
---------TATAAAAGC-AAGGCATCCCCCTCGCCT---------------------CTGGCCACA-CCC--C----GC
CGTGCTCTGC--CTCTCTTCCCGTGCGGAGCC---ACCGCC-GACGAT--------------CCACCCCTCTCTCCCC-A
AGCCCAGCCGCGACGATGGGCGAGCGATTCCCCGGCGATTGGGCGACGGCCAACGGCTTCAGCCGCTGCTCGCTGCACGA
GTGGGAGGCGTACTTGCTCTTCGAGGCCAACATCCTGGCGCCTCCCGGCATGCGCGCAGGGCCGGGCGGGTGGAGGCTCA
ACGCCGGTGGTGTCCCTATTC
>chr5D_2009
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-------------------------------------------------------------------AGGAGTCCGTTTT
TCACTGGTATGGGGCCAAATTGGCGGCGGCGGATCCAGGCCGAACCCGGCGTGCTGGGG-A----------GCATCCGGG
GGTGCCGGGCGAGCGATTTTGGCGCGAAAGAGCTGCGGGC------------CCGCCGAGTCAGCGACA--CTCGCCTCG
TCGTCCTCAGAACGCCTCGGT---TTCCCGC-GGGGAATCAATGGCAAGGCTG-CGGCCGGTCAGCCTTCCATTGATTCC
TCATGGGCAGCGCTTCCTCAC-GGGCGGCGCGGCAACG-TCCCCCTCCCGCCACGCGTACACACGGCGCC---CGGC---
---------TATAAAAGC-AACACCTCCCCCTCGCCT---------------------CTGGCCACG-CCCGCCCACAGC
CGCTGCCCGC--CTCTCTCCCCGTGCGCAGCC---GCCGCCCGATGTT--------------CCTCCTATCTCTCCCC-A
AGCACATCCGCGACGATGGCCGAGCGGTTCCTCGGCGATGGGGCGGCGGCCAACGGCTTCGGCCGCCGCTCGCTGCACGC
GTGGGAGGCGTATCTGTTTTTCGAGGTGGACATCCCGGCGCCACCGGACATGTGCGCAGGGCCGACAGGGTGGAGGCTCA
GTGCCGGTGGCGTCCCCATTC
>chr3D_2027
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-----GGGTTGGGCCGAAATTGGGGCCGGCGAGCCCAGGCCGAACCCGGCGCGCTTGGG-G-GGCCTGGGAGCGTTG---
------GGGCGAGCGATTTTGGCACGAACTAACTGCGGGCCCGC-----------CG-AGTTAGCGACACTATCGCCTCG
TCATCCTCACAACGCCTCAGT---TTCCCGC-GGGTAATCAATGCCAAGGCTG-CCGCCGGTCAGCCTTTCATTGATTCC
TCATGGGCGGCACGTCCTCAC-GGGCGGCGCGGCGACGCCCTCCCTCCCTCCACGCGTACACGTGGCGCCGAGCGGC---
---------TATATAATC-AACGTCTGCCACTCACCT---------------------CTGGCCAAACCCC--C----GT
CGTGCTCTGCCTCTCTCTCCCCGTGCGCCA---------CC-TACGAT--------------CCT--CCCCTCTCCCC-A
AGCCCAGCCGCGACGATGGGCGAGCGATTCCCCGGCGATGCGGCGGCGGCCAACGGCTTCGGCCGCCGCTCGCTGCACGG
GTGGGAGGCTTATTTGCTCTTCGAGGCCAACATCCCGGCGTCACTCGACATGCGCGCAGGGCCGGGCGAGTGGAGGCTTA
GCGCTGGTGGCGTCCCCATTC
>SNPs
--------------------------------------------------------------------------------
-S------------------------------------------------------------------S-----------
---------------S----------------------------------------------------------------
----------------------S---------------------------------------------------------
-----------------SSSSS----------------------------------------------------------
------------------S-------------S------------------SSSS-------------------------
------------------------------------------S-------------------------------------
--------------------------------S-----------------------------------------------
S---------------------------S---------------------------------------------------
S---S------------------------------------------------------S--------------------
-------------S-----------------------------------------------------------S-----S
SSS------------------------S------------------------S--------------------------S
--SSSS--------------------------------------------------------------------------
-------------------------------------------SSSS---S--------------S--------------
-----------------------------------------------------S----------S---------------
------------------------------------------S-----------SS------------------------
------------------------------------------------------------S-------------------
-----------------------------------------------------------------S--------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S----------S-------------------------------------S----------
-----------------S--------------------------------------------------------S-S---
-----------------------------------------------------------S--------------------
-------------------------------------------------S-------------------------S----
-SS-----------------------------------S--SSSS--S--------------------------------
-----------------------S--------S---------S---------------S---------------------
--S------S--------------S----------------------S---S----------------------------
-S------------------S-S---S-------------------------------S---------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-----S----------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------S-----------------------------------------------------------
----------------------------------S---------------------------------------------
----------------------S---------------------------------------------------------
---------------------
>forward_452
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GCCACACGTCAGCTAGCTAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_1916
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATGGA
CTTGTCGACGCACAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
