>input_sequence_75430
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATGAGCAGC---GCGGAGGCGTCGGCGGCGAG
GGGCGGCGAGGAGGAGCGGTGCCGGTACAAGGGCGTGCGGCGGCGGCGGTGGGGGAAGTGGGTGTCGGAGATCCGGGTGC
CCGGCACGCGGGAGCGCCTGTGGCTCGGCTCCTACGCCACGCCCGAGGCCGCCGCCGTCGCGCACGACACGGCCGTCTAC
TTCCTCCGCGGCGGCGCCCTCTCCGGCAACGGCGCCGCTGGGCTCAACTTCCCGGAGCGCGCGGCCGCCGCGTACGGCGC
CGGCTCCGTGGCGCCCCTCTCGCCACGGTCCGTGCAGAGCGTGGCGTCCGACGCCGGCATGGCCGCCGACGCGCAGCTCG
TGGCGGCGCGGGACGGCGCGCCCGGGCAGCACTACGCGGAGGCGCGCGCCGGCGCAGGCGCCGCGCAGGGCGGCGCGAAC
GCGCGGCACGCGGAGTTCCAGCACGACGGCGCGTATGCGTACACGTATACCGGGGACGGCGGGGACACCACTGGCGGCGG
TGGTGG---CAGTAGGGAGCAGCTTGTCACCGGCGAGCTCAGCGTCGACGACATGGAGATATTGATGTAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr3A_1_TraesCS3A01G404400
TTTGTTCCATAATTTTTGTTGTGGTTTAATTCAATGAACTAACTTTTGTTCATTGAATTAAACTACAACAAGAAAATCAC
AACAAGAATTATGAACATAATTATGTTGTACTGGTTATATTACTACCTCCGTTCTGGTTTATTAGTCCTCATTGTATTTT
GTGTCAAATTTTGACCATGGATTTAATTAACAAAAATGATTGTGCATATGTCGCCAAAAATTATATCATTGAAAACTATG
TTTAAATACGAATCCAACAATAAA-CGATATATTTTTTGTTGACATGCATTAACATTTTGTTAGTTAAATATTTGATCAA
AATTTGACACAAATTACAAAGAGGGCCAATAAGTCAGGACGAAGGTACCGTCCGTTTCAGTTTACAAGTCCTGCGCGTAT
ACCTAGGTTGGCAATTTTATCACCCTAATATAAACTATACTCCTATAACACAAAAATTATACTGCTTGAAAATAGAACAT
CTGAAGTTTATATTGATATATTTGTTGTAATATATGACTTGCATTAGGTTGGTCAAATTGACGACCTAAGGATACGCGCA
TGCCCTGTAGCAACTTTTTAGCTAAAAGTCAATCCCATTAATTCTCCAAACTAATATTGTGGAACTTGAGACGGCAGCCT
GTAACTGCGATGGAGAAGAGGGTTCCCCACAGAATCTGATGGCGACTTGGGGAGCCTACCACCACATGCGTGTTCATACG
ATCGATACTACGACCATAAAAAATGGTTTGACCCTTTGAAGATTTTGACCCCGTTGCTCCCATGCCGACCACAAATATCA
CCACACGGCTGTATTAGCACC---GCTCACAGCTCACAAGGTCAAACTCAAACCCGATTCGATCCTTCCGCATGCAGCGT
CAACTCGTTTTGTGGGTTGACCTCTCACTGGTATATAAGCGCGTGGTACGTCGTACGTTCATTTGGAAGCTCAACGCATG
CGTTGAGAAAGAGGCGAGGTCAGAGGCTCGGAAGGTGGT----CAGCCATGAGCAGC---GCGGAGGCGTCGGCGGCGAG
GGGCGGCGAGGAGGAGCGGTGCCGGTACAAGGGCGTGCGGCGGCGGCGGTGGGGGAAGTGGGTGTCGGAGATCCGGGTGC
CCGGCACGCGGGAGCGCCTGTGGCTCGGCTCCTACGCCACGCCCGAGGCCGCCGCCGTCGCGCACGACACGGCCGTCTAC
TTCCTCCGCGGCGGCGCCCTCTCCGGCAACGGCGCCGCTGGGCTCAACTTCCCGGAGCGCGCGGCCGCCGCGTACGGCGC
CGGCTCCGTGGCGCCCCTCTCGCCACGGTCCGTGCAGAGCGTGGCGTCCGACGCCGGCATGGCCGCCGACGCGCAGCTCG
TGGCGGCGCGGGACGGCGCGCCCGGGCAGCACTACGCGGAGGCGCGCGCCGGCGCAGGCGCCGCGCAGGGCGGCGCGAAC
GCGCGGCACGCGGAGTTCCAGCACGACGGCGCGTATGCGTACACGTATACCGGGGACGGCGGGGACACCACTGGCGGCGG
TGGTGG---CAGTAGGGAGCAGCTTGTCACCGGCGAGCTCAGCGTCGACGACATGGAGATATTGATGTAAAATTGAGTAT
ACATCACACCGG------------TACGTAGAATTAGCTGATGGAATAAAGATCGAACACCGGTCGCAGTTGGCAAGGTT
GAGCCATTTGAAATTCGAAAAATACTTCCGTTGAGTGGCG------------------------ACCTGTTGACATTTGA
AATTGGCGGGACACGT----AGCCACCGCATATGCTGCGGTGAGTGGCGACAGTGCTCGATCGTATGCATGGCCACCGGC
ACGTAGGCGAGGCCCCGCTTGGGTGATCTGATGAATGGCGCTGCGGCCTGCGGGCAGGCCTAGGTTGACCA---------
---------------------------------------------------------------GC-AGCCCTTTTCGCCT
GCCTGCCACTGCCGAGGGAGGATGGGTCAGAGCACAGAGCATGCTTAGTTTGATGTCAAAATTTCCCTTTGCTAATGTTT
GGTCAAAGCTAAAAAGTTAGCTATTACTCCCTCCATAAAGAAATATAAGAGATCTAAACGTTCTTATATTTCTTTAGGGA
GGGAGTACTTCATGTCAATGTTTTTCTTTTTTGTTTGGAAGTTTGGCAATTGCCAAATGTTATCTTGTTAGTGCTGGAAT
TTTGTCTATTTTGAGCCTAGCCCAATAGCAGTTTCAAAAATTCCTAATAAATTTTAGAAGCCCACGCAGCCCATTCGTGC
AAGGCAAGAGGTGGAACAAAAGTTTAGTCCCACATTGCTAGTTTAGAGGGAGTTGGACCTCTTTATAAGGGAGGTTCTTT
CTCCACATGTATGAGCATGAGAACAAGATGGACATCCACGCGCGCTCCTCCTTCGCCACCCGCCACGCCTCGTCACGACG
CAAACCTATAGGATGTAAATGAGTATTCAAGAAGAAGCTTAGGCCTGATGGTACTATTGAAAAGTACAAGGCTCGGCTCG
TGGCTAAGGGTTATACACAAAAGAAGGTGAAGACTTCTTGATACTTACTCACCTGTGGCTCGACTGACCACTATTCGAGT
TCTACTTTCACTAGCTGCCTCGCATGGTCTTCTCGTTTATCAAATAGATGTTAAGATTGCTTT
>chr3D_107
--------------------------------------------------------------------------------
--------------------------TGTACTGGTTGTACTACTACCTCCATTCTGGTTTATTGGTCCCCAATGTATTTT
GTGTCAAATTTTGACCATGGATTTAATTAACAAAACGTTCGTGC---ATGTCACCAAAAATTATATC-------ACTATG
TTTAAATACGAATCCAACAATAAAACGATATAATTTATGTTGATATGTATTGACATTTTATTAGTTAAATATTTGATCAA
AATTTGGCACAAATTACAAAGAGGACCAATAAATCAGGAC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TAGCAACTTTTTAGCTAAAAGTCAATCCCATTAATTCTCCAAACTAATATCGTGGAACTTGAGACGGCAGCCT
GTAACTGCGATGGAGAAAAGGGTTCCCCACAGAATCTGATGGCGACTTGGGGAGCCTACCACCACATGCGTGTTCATACG
ATCGATACTACGACCATAAAAAATGGTTTGACCCTTTGAAGATTTTGACCCCGTTGCTCCCATGCCGACCACAAATATCA
CCACACGGCTGTATTAGTACTGCTGCTCACAGCTCACAAGGTCAAACTCAAAGCCGATTCGATCCTTCCGCATGCAGGGT
CAACTCGTTTTGTGGGTTGACCTCTCACTCGTATATAAGCGCGTGGTACGTGGTACGTTCACTTGGAAGCTCGGCCG-TG
CGTTGAGAAAGAGGCGAGGTCAGAGGCTCGGAAGGTGGTCAGCCAGCCATGAGCAGC---GCGGAGGCGTCGGTGGCGAG
GGGCGGCGAGGAGGAGCGGTGCCGGTACAAGGGCGTGCGGCGGCGGCGGTGGGGGAAGTGGGTGTCGGAGATCCGGGTGC
CCGGCACGCGGGAGCGCCTGTGGCTGGGCTCCTACGCCACGCCCGAGGCCGCCGCCGTCGCGCACGACACGGCCGTCTAC
TTCCTCCGCGGCGGCTCCCTCTCCGGCAACGGCGCCGCTGGGCTCAACTTCCCGGAGCGTGCGGCCGCCGCGTACGGTGC
CGGCTCCGTGGCGCCCCTCTCGCCGCGGTCCGTGCAGAGCGTGGCGTCCGACGCGGGCATGGCCGCCGACGCGCAGCTCG
TGGCGGCGCGGGACGGCGTGCCCAGGCAGCACTACGCGGAGGCGCGCGCCGGCGCTGGCACCGCGCAGGGCGGCGCGA--
-------ACGCGGAGCTCCAGCACGACGGCGCGTATGCGTACACGTATACGGGGGACGGCGGGGACACCACTGGCGGTGG
CGGTGGTACCAGTAGGGAGCAGCTTGTCTCCGGGGAGCTCAGCGTCGACGACATGGAGATATTGATGTAAAATTGAGCAT
ACACGAACACCGGTA-----GTACTACGTAGAATTAGCTGATGCAATAAAGATCGAACACAGGTCGCAGTTGGCAAGGTT
GAACCGTTTGAAATTCGGAAACAG---TTCCGCGCACACGTCCGATATGAAATGATTA----CTACCTGTTGACATTTGA
AATTGGCGAGGCATGT----AGCCACTGCGTATGCAGCAGTGAGTGGCGACAGTGCTC----GTGTGCATGGCCACCGGC
ACGTAGGCGAAGCCCCGCTTGGGTGAT-TGATGAATGGCGCTGCGGCCG-------GGCCCAGGTTGACCAGGCCAGCTG
GCATTGAATGCTGAGGCTCTTCTTTCTCTGAGCTGCGGACCGATCGAGACCGGTCAATGACTAGC-AACCCTTTTCGCCT
CCCTGCCAGTGCCAAGGGAGGATGGGTCAGAGCATTGAGCATGCTTAATTTAATGTCAAAATTTTCCTTTGCTAATGTTT
GGTCAAAGCTAAAAAGTTAGCTATCACT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr3B_636
GCCTGTAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ACTGCGATGGAGAAGAGGGTTCCCCACAGAATCTGACGGCGACTTGGGGAGCCTACCACTACGTGCGTGTTCATACG
A--------------------------TTGACCCTTTGAAGATTTTGACCCCGTTGCTCCCATGCCGACCACAAATATCA
CCACACGGCTGTATTAGTACTGCT---CACAGCTCACAAGGTCAAACGCAAAGCCGATTCGATCCTTCCGCATGCAGGGT
CAACTCGTTTTTTGGGTTGACCTCTCACTGGTATATAAGCGTGTGGTACGTAGTACGTTCACTTGGAAGCTCGGCCG-TG
CGTTGAGAAAGAGGCGAGGTCAGAGGCTCGGAAGGTGGTCAGAG----ATGAGCAGCGCGGCGGAGGCATCGGCGGCGAG
GGGCGGCGAGGAGGAGAGGTGCCGGTACAAGGGCGTGCGGCGGCGGCGGTGGGGGAAGTGGGTGTCGGAGATCCGGGTGC
CCGGCACGAGGGAGCGGCTGTGGCTGGGCTCCTACGCCACGCCCGAGGCCGCCGCCGTCGCGCACGACACGGCCGTCTAC
TTCCTCCGCGGCGGC---------GGCAACGGCGCCGCTGGGCTCAACTTCCCGGAGCGCGCGGCCGCCGCGTACGGCGC
CGGCTGCGTGGCGCCCCTCTCGCCGCGGTCCGTGCAGAGCGTGGCGTCCGACGCCGGCATGGCCGCCGACGCGCAGCTCG
TGGCGGCGCGGGACGGCGCGCCCAGGCAGTGCTACGCGGAGGCGCGCGCCGGCGCAGGCGCTGCGCAGGGTGGCGCGAAC
GCGCGGCACGCGGAGTTCCAGCACGACGGCGCGTACGCGTACACATATACGGGGGACGGCGGGGACACCACTGGCGGC--
-GGTGG---CAGCAGGGGGCAGCTTGTCTCCGGCGAGCTCAGCGTCGACGACATGGAGATATTGATGTAAAATTGAGCAT
ACACCATCACCGGTAGTCCGGTACTACGTAGAATTAGCTGATGCAATAAAGATCGAACACCGGTCGCAGTTGGCAAGGTT
GAGCCATTTGAAATTCGAAAATATTACTTCCGCGCGCACGTTCGATATGGAATGATTACTACCTACCTGTTGACATTTGA
AATTGGCGAGACATGTAGCCAGCCACTGCGTATGCAGCAGTGAGTGGCGACAGTGCTC----GTATGCATGGCCACCGGC
ACGTAGGCGAGGCCCCGCTCGGGTGATCTGATGAATGGCGCTGCGGCCTGCGGGCAGGCCTAGGTTGACCAGGCTAGCTG
GCATGGATCGCTGAGGCTCTCCTTTCTCCAAGGTACGGACGGATGGCGACCGGTCAATGACCAGCAAACCCTTTTCGCCT
GCCTGCCAGTGCCAAGGGAGGATGGGTCAGAGCATAGAGCAAGTTTAGTTTGATGTCAAAATT-CCCTTTGCTAATGTTT
GGTCAAAGCTAAAAAGTTAGCTATC-------------------------------------------------------
------ACTTGATGTCAAC----------TTTGTTTGGAAGTTTGGCAATTGCCAAATGTTGTCTTGT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS----------S--S----------S------------S----S--S--------
-----------------------------------SSSSSSSSSSSS-----S--------------SSSSSSS------
--------------------------------S---S------S---S---S-------S--------------------
------S-----------------S-------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--S-------------------------------S------------------------S--
---------------------------------------------------S---------S----------SS-SSS--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
---------------S----------------------------------------------------------------
------------------------S-------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------S-----------------------------
S---------------------------S------------------------------------------------S--
---S--SSS-S--------------------------------S------------------------------------
---------------------SSSSSSSSSSSSSSSSS------------------------------------------
--------S----S------------S--S-----S--S-------------------SSSS------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
--------S----S--------------------S---------------------------------------------
------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----S-------SSSSSSSSSSS--------------------------------S------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_378
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------ACGAAGGTACCGTCCGTTTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_1714
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AGTGGCGACCTGTTGACATT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
