>input_sequence_75426
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-----------------------------------------------ATGGCAGCCAGGCTCCTCTTCTCCCTCCTCCTC
ATCCTTCTCGTTGGCTCCCACGGAGCGTTTGCCTCCGTGCAGGAGACGTGCGCGAAGGCGATGAAGGGATCGGAGCACAA
GAACCTTGAGTCCTTTTGCGTGACGACGCTCCAGGCGGCGCCGGGGAGCGCCTCCGCGGACGCGAAAGGGCTGGCCGTGA
TCGCCACGAACCTGACGCTGGCCAACTACACGGCGGCGGTGGCCACAATCAAAGAGCTGCAACGGCGCGGGGGCTGGTCG
GACAAGCAGCAGGCCGCGCTGGCCACGTGCCGCCGGCGGTACATCGAGGCGCTGAACGTGGTGCACAGCGCCGTCCACGC
GCTGGCCACGGGGCGGAAGCAGGCGTACGTGGCCGAGATGGGCGCCGTCAGGAGGTCCGCCATCGACTGCGACGACGCGT
TCGGCGGACGCGGTGGCGACGACGCGTTCGGCGGACGCGGTGGCGACGCCGCGGCGAAGCCGGGGGAGGCGCCTCTGCGC
AAGGTGAATGACGACGCGGAAAACCTGACCACCATGGCCATGCTGATCGTGATCACGCTGTAG-----------------
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>chr2D_1_TraesCS2D01G311600
CTCGCACAATGACCATTGGCTGACACCAAGACTGAAATGTGTAAGGCCTTGTTCAATGCTAGGTGCTTAGGGAGGTGCTT
ACAAAAATAAACTAGGTTATTCTGAAGCACCAGTATCTATTTCTACAGGAGAGACGTCTAATTAAACTTTTATCATAAAC
AAATAAGTATCGGTGCTTAAGAAAAGCCTGGTTTATTTCTCCAAGCACCTCTCCTAAACATCTTGCATTGTACAAGGCCC
AAGAAAACCACGATAACGCCCGACTAGCACCACTCTCCTCTCAGAATAGATATCGTCTCTAGCAGCACCCAACATGATAT
ACGAATAAAAACACCACTAGAACATAATTAAAACTCAAGCCAATATAGCTAAAATCAAAAAGAAATAACCGACCACTGCT
AGATAAAAAAGACAATTCCACAAGTGAAAAATGGCACAACGAAGCGTCTGTTGGCCTCTAATTGTCTCTAATTCTAATCC
AAAGGGAAACAACATATAAGAAAAGTCG------GCTGTGTCTTATCTTCTTCTTTGCTCGGTGCCTGTCCGCGCTTAAA
AAGGCGCAGAAGTTCCGGTCTCAAGTGTCATTGTGCATTCTGTGAGTATTAAACGACAGTTTTTATGTATCATCCCACCC
AAATTTGGAAAACAATGAACACCTTCAAGCATTATGTAGTACATTTATGACTAGTTACGAGAAATGTGAAAAAAAATG-G
CCCATTCACTAAGAGGATCCATTTATAAGCAAAATACACAGAAGATTTGGTCTCGTATTTATTCCCTTTACCTACAAGAT
GTACTCTCACCATCCGAAATTATTTGTAGCAGAAATGAATGTATCCAGACATATTTTAATTCTAAATACATCCATTTTTA
TTCATTTTTGGACAAGTAATTTTGGACGAAAGGAGTACTACATAAAGCCATAAAATTCCTCAAGGTTTGGCAGTGCACGA
GCCGAAGCCAGCAAAAACAGAATCCTAACCAAGCAAGAGCGCACACCATGGCAGCCAGGCTCCTCTTCTCCCTCCTCCTC
ATCCTTCTCGTTGGCTCCCACGGAGCGTTTGCCTCCGTGCAGGAGACGTGCGCGAAGGCGATGAAGGGATCGGAGCACAA
GAACCTTGAGTCCTTTTGCGTGACGACGCTCCAGGCGGCGCCGGGGAGCGCCTCCGCGGACGCGAAAGGGCTGGCCGTGA
TCGCCACGAACCTGACGCTGGCCAACTACACGGCGGCGGTGGCCACAATCAAAGAGCTGCAACGGCGCGGGGGCTGGTCG
GACAAGCAGCAGGCCGCGCTGGCCACGTGCCGCCGGCGGTACATCGAGGCGCTGAACGTGGTGCACAGCGCCGTCCACGC
GCTGGCCACGGGGCGGAAGCAGGCGTACGTGGCCGAGATGGGCGCCGTCAGGAGGTCCGCCATCGACTGCGACGACGCGT
TCGGCGGACGCGGTGGCGACGACGCGTTCGGCGGACGCGGTGGCGACGCCGCGGCGAAGCCGGGGGAGGCGCCTCTGCGC
AAGGTGAATGACGACGCGGAAAACCTGACCACCATGGCCATGCTGATCGTGATCACGCTGTAGCGGGCACATTATACG--
-TAGTAGATCTTGCCGTACGTGATCAGCGTCAGGCAGACCGGTCGATGGAGAAGAAAATAACCGAGTGTGTGATTTGACT
TGTTTGTGCCGTTAAATTCCTGTTGGCTTGC--TATGATGCTATCTTGGGATTTGCTTAGCCCATAA-------------
-----------------------------------------------------------ATTTGTATCCCTCTCGTCCAT
GCTGCCTGCCCGTGAGTGAGATGTTGTGGACGGCATTCTGCAGAATAGTAGGAGAGGGCCCGGTCGCTGGCTTCTGAAAC
TGGCAAGCTCCAACGGACGCAACGCAAGCATATGAGTTGATCGAGGCAGAAGAGCGGTCCACAGCCACGCACATCTCGTG
AAGCTAAATTCCAACGCCGAATTGGTAGTACTATAAAATTTGTCATCTTCTGCTTGGCATTCTGTCCTCACTCAGAGATT
ACTTTTTTTCTTTGAGCGGAGAGAGC--------CAGTAGGATCTCTAGCACACCCCCAAAAGTTATACGT---------
---ACGTATATGAGACAGGATTTTTTGCCTCGAAAATTAACACTCGTCTAGCTCATCCTAATCTTCTTTATTTCCCCAAA
CATAGCTTTTAATCCCCCAAAACCTTTTCCCTTAGACCATTTTTTGTAGAAAACACATACACGCACACACACCATCTATG
TTTGGCCGAATTTGGGGCACCTACCATGATAATTGATGAGCGCGGGGTGAGCTAGGGTTGTTTGTTTTTGTTGTTTGTTG
GTGGTGTTGGTGGTGCGGTGAGCGCGCGCGTGTGTGTGCGTGTGTGTGTGGGGTGTGTGTGTGTGTTATAGCCGGAGCCG
AGACAATTGGTGAGCTTACCGATGACCACACATTAATGCGGAAGGGGAGTGAAAACACACACACACGCACACACACACGC
GCGCTCACCGCACTACCAACACCACCAACAAACAACAAAAACAAACAACCCTAGCTCACCCCGCGCTCATCAATTATCAT
GGTAGGTGCCCCAAATTCGGCCCCCACCGCCCCCGATTCA
>chr2A_245
AAACAT--------------------------------------------------------------------------
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-----------GACAACGCCCGACTAGCACCACTCTCCTCTCAAAACAGATATCGTCTCTAGCAGCACCCAACATGATAT
ACGAATAAAAACACCACTAGAATATAATTAAAACTCAAGCCAATATAGATAAAATCAAAAAGAAATAACCAACCACTGCT
AGATAAAAAAGACAATTCCACGAGTGAAAAATGGCACAACGAAGCGTCTGTTGGCCTCTAATTGTCTCTAA------TCC
AAAGGGAAACAACATATAGGGAAAACTAGGGTCAGTTGTCTCTTA---TCTTCTTTGCCTGGTGCTTGTCCGCGCGTAAA
AAGTAGCAGAAGTTCCGGTCTCAAGTGTCATTGCACATTCTGTGAGTATTAAACGACAGTTTTTACGTATCATCCCACCC
AAATTTGCAAAACAATGAACACCTTCAAGCATTATGTAGTACATTTATGACTAGTTATGAGAAATGTGAAAAAAGA--TG
CCCATTCATTAAGAGGATCCATTTATAAGCAAAATACAAAGCGGATTTGGTCTCGTATTTATTTCCTG--------AGAT
GTACTCCCTCCGTCCGAAATTACTTGTCACAG-AATGAATGTATTTAGACATATTTTAGTTTTATATACATCCATTTTCA
TTCATTTCTGGACAAGTAATTTTGGATGGAAGGAGTACTACATAAAGGCATGAAATTCCTCAAGGTTTGCCAGTGCACGA
GCCGAAGCCAGCAAAAACTCAATCCTAACCAAGCAAGAGCGCACACCATGGCAGCCAGGCTCCTCTTCTCCTCCCTCCTC
ATCCTTCTCGTTGGCTCCCACGGGGCGTTTGCCTCCGTGGAGGAGACGTGCGCGAAGGCGATGAAGGGATCGGAGCACAA
GAACCTTGAGTCCTTCTGCGTGACGACGCTCCAGGCGGCGCCGGGGAGCGCCTCCGCGGACGCGAAAGGGCTGGCCGTGA
TCGCCACGAACCTGACGCTGGCCAACTACACGGCGGCGGTGGCCACAATCAAAGATCTGCAACGGCGCGGGGGCTGGTCG
GACAAGCAGCAGGCCGCGCTGGCCACGTGCCGCCGGCGGTACATCGAGGCGCTGAACGTGGTGCACAGCGCCGTCCACGC
GCTGGCCACCGGGCGGAAGCAGGCGTACGTGGCCGAGATGGGCGCCGTCAGGAGGTCCGCCACCGACTGCGACGACGCGT
TCGGCGGACG---------------------------CGGTGGCGACGCCGCGGCGAAGCGGGAGGAGGCGCCTCTGCGC
AAGGTGAACGACGACGCGGAAAACCTGACCACCATGGCCATGCTGATCGTGATCACGCTGTAGCGGGCACATGATACATA
CTAGTAGATCTTTGC---CGTGATCAGCGTCAGGCAGACCGGTCGATGGAGAATAAAATAACTGAATGTGTGATTTGACT
TGTTTGTGCCGTTAAATTCATGTTGGCTTGCTATATGATGCTATCTTAGGATTTGCTTAGCCCATGGTACTTCCTCCATA
GGGATAAAAATAGAGTTTATCTATTTTAATGACAAATATTTTCGGACGGAGGGAAGTACATTTTTATCCCTCTCCTCCAT
GCTGCCTGCCCGTGAGTGAGATGTTGTGGACGGCACTCTGCAGAATAGTAGGAGAGGGCCCGGTCGCTAGCTTCTGAAAC
TGGCAAGCTCCAACGGACGCAACGCAAGCATATGAGTTGATCGAGGCAGAAGAGCGGTCTACAGTCACGCACATCTCGTG
AAGCTAAATTCCAAAGCCGAATTGG---TACTGTAGAATTTGTCATCTTCTGCTTGTCCTCAATACAGAGATT-------
--TTTTTTTCTTTCAGCGGAGAGAGATTACTTTGCAATAGGATCTCTAGCACATCCCCCAAAGTTATACGTGTAAAAAGT
TATACGTATATGAGACAGATTTTTTTGTCTCGAAAATTAACACTCATCTA------------------------------
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>chr2B_245
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----AAGCCACGACAACGCCCGACTAACACCACTCTCCTCTCAGAACAGATATCGTCTCCTACAGCACCCAACATGATAT
ACGAATAAAAACACCACTAGAACATAATTAAAACTCAAGCCAATATAGATAAAATCAAAAAGAAATAACCGACAACTGCT
AGATAAAAAAGACAATTCG-CGAGTGAAAAATGGCGCAACGAAACGTCGGTCGGCCTCTAATTGTCTCTAG------TCC
AAAGGGAAACAACATATAGGGAAAACTAGGGTCAGCTGTCTCTTATCTTCTTCTTTGCTCGGTGCCTGTCCGCGCGTAAA
AAGGCGCAGAAGTTCCGGTCTCAAGTGTCATTGCGCATTCTGTGAGTATTAAACGACAATTTTTATGTATCATCCCACCC
AAATTTGGAAAACAATGAACACCTTCAAGCATTATGTAG---------GACTAGTTATGAGAAATGTGAAAAAAAAATTG
CTCATTCATTAAGTGGATCCATTTATAAGCAAAATACATAGAAGATTTGATCTCGTATTTATTCCCTTTGCCTAC-----
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-----------------------------AAGATGTACTACATAAAGCCATAAGATTCCTCAAGGTTTGCCAGTGCACGA
GCCGAAGCCAGCAGAAACTCAATCCCAACCAAGCAAGAGCGCACACCATGGCAGCCAGGCTCCTCTTCCCTTTCTTCCTC
ATCCTTCTCGTTGGCTCCCACGGGGCGTTTGCCTCCGTGCAGGAGACGTGCGCGAAGGCGATGGAGGGATCGGAGCACAA
GAACCTTGAGTCCTTCTGCGTGACGACGCTCCAGGCGGCGCCCGCGAGCGCCTCCGCGGACGCGAAAGGGCTGGCCGTGA
TCGCCACGAACCTGACGCTGGCCAACTACACGGCGGCGGTGGCCACAATCAAAGAGCTGCAACGGCGCGGGGGCTGGTCG
GACAAGCAGCAGGCCGCGCTGGCCACGTGCCGCCGGCGGTACATCGAGGCGCTGAACGTGGTGCACAGCGCCGTCCACGC
GCTGGCCACCGGGCGGAAGCAGGCGTACGTGGCCGAGATGGGCGCCGTCAGGAGGTCGGCCACCGACTGCGACGGCGCGT
TCGGT---------------------------------GGTGGCGCCGCCGCGGCGAAGCGGGGGGAGGCGCCTCTGCGC
AAGGTGAACGACGACGCGGAAAACCTGACCACCATGGCCATGCTGATCGTGATCACGCTGTAGCGGGCACGTGATACA--
----TAGATCTTGCCGTACGTGATTAGCGTCAGGCAGACCGGTCGATGCAGAAGAAAATAACCGAATGTGTGATTTGACT
TGTTTGTGCCGTTAAATCCTGTTTGCT-----------TGCTATATTGGGATTTGCTTAGCTCATACTCCTATGTTC---
---------------------------------------------------------------TTGTCCCTCTCCTCCAT
GCTGCCTGCCCGCGAATGAGA----------------------------AGGAGGGGCCCCGGTCGCTAGCTTCTGAAAC
TGGCAAGCTCCAAAGGACGCAATACAAGCGTATCAGTTGATCGAGG------AGCGGTCTACAGTCACGCACATCTCGTG
AAGCTAAATTCCAAAGCCGAATTGG---TACTGTAGAATTTGTCATCTTCTGCTTG------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS--S------S--------------------------------S---------------------------------
------------------------------------------------S-------------------------------
---------------------S-------------------------------------------------SSSSSS---
------------------S-S---SSSS-----------S-----------------------------------S----
---------------------------------S----------------------------------------------
---------------------------------------------------------S------------------SS--
--------S-----------------------------S------------------------------S-----S----
------S-S--S----------S----SS---S-----------SS------------S--S--S-------------S-
-------S------------------S-S----------------------------------------S----------
------------------SS---------------------------------------------------S--------
-----------------------S--------------------------------------------------------
---------------S----------------------------------------------------------------
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---------S----------------------------------------------------S-----------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S-------------------
--------S---------------------------------------------------------------S----S--
-----------------------------------------------------------------S--------------
-------------------S----------------------------------------------S-------------
---------------------------------------------------------------S----------S-----
-----------------------------------S--------------------------------S-----------
-----------------------------------------------------------S----S---------------
--------------S----------SSS----S--S--------------------S-S-SSSSS-SSSSS-SSSSSSSS
SS-----------S-----------S----------S----------------S----S---------------------
------------------SS-------S-----------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_76
--------------------------------------------------------TGCTAGGTGCTTAGGGAGGT----
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>reverse_1909
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--------------------------------------------------------------------GGCTTCTGAAAC
TGGCAAGC------------------------------------------------------------------------
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